pycom01g09790

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000733
Physical Location & Seq
Forward (+)
10600998 .. 10602310
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09790.2

Sequence Viewer

Length: 1263 bp
ATGATCGATCTTAGCGTTGTGATGCTGCCATGGTCTGCCTTTGGCCACATGATGCCTTTTTTACAACTTTCAATAGCTTTAGCAAAAGCGAAAGTTCATGTCTCCTTCATATCCACACCAAAAAACATCCAAAGACTCCCCAAAATCTCACCAGATTTACAACCCTTTGTACAATTAGTCCCCATTCCATTTCCACCGTTGGATCCCGACTTATTGCCGGAAGGAGCTGAGGCCACGGTGGACCTCCCCTTTGAAAATACTGACAACTTGAAGATTGCGTACGACCTCCTGCAAACACCCATCAAGCAGTTCATTGGGGATCGATTGCCTGATTGGATCATAACCGACTTTGTTGCTCATTGGGTTGCAGATATTGGCAAAGAGTACGGCGTTCCACTTGTCTATTTTTCTGTTTTCTCTGCTGCTTCAAGGATCGTTTATAGTCCAGCTGAAAATCTCTACAGTTGTAATACAACTGATGTTCTGCCATCACCGGAAAGCCTTACTTCGCCGCCGGATTTGGTTACTTCTCAGTCAACAGTCGCGTTCCGAGAGCACGAGGCGGTCCATATACACGCAGGCTTTTATGGAGTGAATGAGTCCGGGATAAGTGATGCCGAAAGAAAAGCCAAGATTCTATCAGCTTGTCAAGTTCACGCCATTCGGAGCTGCGATGAGTTTGAAGGAGAGTACTTGAAGGCGTACAAGAACAACTCTAGGAAGCTTGTGATTCCCACAGGTTTGCTTCCTCCTGAGATACCTGCTAAAGGGGTAGAAAGGGAGATTTCCAGTGACGATGGGATCCTTGAATGGCTCGATAAGCAAAAAACCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGTTGAGTAAAGAGCAAGTCTTTGAGATAGCTCGTGGGCTGGAGCTATCAGAACTCCCTTTTCTTTGGGCACTCAGAAAACCCAATTGGGCAACCAATGAAGCTGATGCTTTGCCTCTAGGGTTTGTTGACCGTATATCAGATAAGGGGCTTGTTTGCTTCGGATGGGTGCCCCAAATGGAAATCTTGGCACACCCATCAGTTGGGGGTTCTTTGTTTCACTCTGGATGGGGATCAATAATTGAGACTCTGCAATTTGGGCATGTTCTTGTTGTGCTACCATTCATTATTGATCAGCCTCTCAATGCAAGGCTTTTGGAGGAGAAGAGTATGGCTGTCGAAGTGAAACGACTCGAAGATGGGTCGTTTAGTAGAGATGACATAATCCAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

421

Amino Acids

46.65

Weight (kDa)

5.0

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccII CGCG 1 cut(s) 545
AciI CCGC 2 cut(s) 512, 563
AclWI GGATC 8 cut(s) 197, 210, 327, 344, 440, 796, 809, 1108
AcoI YGGCCR 1 cut(s) 43
AfaI GTAC 5 cut(s) 171, 281, 386, 692, 704
AfiI CCNNNNNNNGG 2 cut(s) 767, 1070
AgsI TTSAA 7 cut(s) 72, 254, 271, 429, 683, 697, 809
AjnI CCWGG 1 cut(s) 830
AjuI GAANNNNNNNTTGG 2 cut(s) 937, 969
AluBI AGCT 9 cut(s) 77, 227, 449, 644, 669, 724, 899, 913, 971
AluI AGCT 9 cut(s) 77, 227, 449, 644, 669, 724, 899, 913, 971
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 2 cut(s) 106, 1106
AlwI GGATC 8 cut(s) 197, 210, 327, 344, 440, 796, 809, 1108
AoxI GGCC 2 cut(s) 43, 231
ApeKI GCWGC 3 cut(s) 25, 422, 669
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspS9I GGNCC 2 cut(s) 241, 565
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 141, 483
AvaII GGWCC 2 cut(s) 241, 565
BaeGI GKGCMC 2 cut(s) 940, 1041
BalI TGGCCA 1 cut(s) 45
BamHI GGATCC 2 cut(s) 202, 801
BanI GGYRCC 1 cut(s) 1036
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BauI CACGAG 2 cut(s) 557, 900
Bbv12I GWGCWC 1 cut(s) 558
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 12, 409, 656
BccI CCATC 7 cut(s) 308, 496, 791, 1026, 1072, 1089, 1220
BceAI ACGGC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 832
BclI TGATCA 1 cut(s) 1159
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 106, 1106
BfaI CTAG 3 cut(s) 717, 986, 1261
BfmI CTRYAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 769
BisI GCNGC 4 cut(s) 26, 423, 512, 670
BlsI GCNGC 4 cut(s) 27, 424, 513, 671
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 2 cut(s) 604, 832
Bme18I GGWCC 2 cut(s) 241, 565
BmgT120I GGNCC 2 cut(s) 241, 565
BmiI GGNNCC 3 cut(s) 204, 803, 1038
BmrFI CCNGG 2 cut(s) 604, 832
BmsI GCATC 4 cut(s) 12, 42, 604, 964
BpmI CTGGAG 1 cut(s) 929
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 604
Bsa29I ATCGAT 2 cut(s) 6, 322
BsaBI GATNNNNATC 1 cut(s) 1099
BsaJI CCNNGG 2 cut(s) 29, 234
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 850, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1070
Bse1I ACTGG 1 cut(s) 789
Bse8I GATNNNNATC 1 cut(s) 1099
BseBI CCWGG 1 cut(s) 832
BseCI ATCGAT 2 cut(s) 6, 322
BseDI CCNNGG 2 cut(s) 29, 234
BseGI GGATG 3 cut(s) 126, 1037, 1100
BseJI GATNNNNATC 1 cut(s) 1099
BseLI CCNNNNNNNGG 2 cut(s) 767, 1070
BseMII CTCAG 4 cut(s) 219, 545, 744, 955
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 1 cut(s) 1202
BseSI GKGCMC 2 cut(s) 940, 1041
BseXI GCAGC 3 cut(s) 12, 409, 656
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 2 cut(s) 45, 233
BshNI GGYRCC 1 cut(s) 1036
BshVI ATCGAT 2 cut(s) 6, 322
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 4 cut(s) 218, 494, 515, 603
BsiWI CGTACG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 767, 1070
BsmAI GTCTC 2 cut(s) 106, 1106
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 45, 233
Bsp1286I GDGCHC 3 cut(s) 558, 940, 1041
Bsp1407I TGTACA 1 cut(s) 169
Bsp143I GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 2 cut(s) 512, 563
BspANI GGCC 2 cut(s) 45, 233
BspCNI CTCAG 4 cut(s) 220, 544, 745, 954
BspDI ATCGAT 2 cut(s) 6, 322
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 3 cut(s) 204, 803, 1038
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 8 cut(s) 197, 210, 327, 344, 440, 796, 809, 1108
BspT107I GGYRCC 1 cut(s) 1036
BsrGI TGTACA 1 cut(s) 169
BsrI ACTGG 1 cut(s) 789
BssECI CCNNGG 2 cut(s) 29, 234
BssMI GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
BssSI CACGAG 2 cut(s) 557, 900
BssT1I CCWWGG 1 cut(s) 29
Bst2BI CACGAG 2 cut(s) 557, 900
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 5 cut(s) 198, 238, 464, 541, 1001
Bst6I CTCTTC 1 cut(s) 1187
BstAUI TGTACA 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 5 cut(s) 11, 228, 531, 753, 941
BstDSI CCRYGG 2 cut(s) 29, 234
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 3 cut(s) 126, 1037, 1100
BstFNI CGCG 1 cut(s) 545
BstKTI GATC 9 cut(s) 6, 10, 205, 322, 339, 435, 804, 1103, 1162
BstMAI GTCTC 2 cut(s) 106, 1106
BstMBI GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 820, 1126
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 1 cut(s) 1133
BstSCI CCNGG 2 cut(s) 602, 830
BstSFI CTRYAG 1 cut(s) 460
BstSLI GKGCMC 2 cut(s) 940, 1041
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 3 cut(s) 12, 409, 656
BstX2I RGATCY 2 cut(s) 202, 801
BstYI RGATCY 2 cut(s) 202, 801
Bsu15I ATCGAT 2 cut(s) 6, 322
BsuRI GGCC 2 cut(s) 45, 233
BsuTUI ATCGAT 2 cut(s) 6, 322
BtgI CCRYGG 2 cut(s) 29, 234
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 3 cut(s) 126, 1037, 1100
BtsIMutI CAGTG 1 cut(s) 796
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 1 cut(s) 580
Cfr13I GGNCC 2 cut(s) 241, 565
ClaI ATCGAT 2 cut(s) 6, 322
CsiI ACCWGGT 1 cut(s) 830
Csp6I GTAC 5 cut(s) 170, 280, 385, 691, 703
CviAII CATG 4 cut(s) 30, 49, 98, 1130
CviQI GTAC 5 cut(s) 170, 280, 385, 691, 703
DdeI CTNAG 5 cut(s) 11, 228, 531, 753, 941
DpnI GATC 9 cut(s) 5, 9, 204, 321, 338, 434, 803, 1102, 1161
DpnII GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 1187
EarI CTCTTC 1 cut(s) 1187
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 241, 565
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 4 cut(s) 33, 52, 101, 1133
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 164
FatI CATG 4 cut(s) 29, 48, 97, 1129
FbaI TGATCA 1 cut(s) 1159
Fnu4HI GCNGC 4 cut(s) 26, 423, 512, 670
FokI GGATG 3 cut(s) 113, 1044, 1107
Fsp4HI GCNGC 4 cut(s) 26, 423, 512, 670
FspBI CTAG 3 cut(s) 717, 986, 1261
GluI GCNGC 4 cut(s) 26, 423, 512, 670
GsuI CTGGAG 1 cut(s) 929
HaeIII GGCC 2 cut(s) 45, 233
HapII CCGG 4 cut(s) 218, 494, 515, 603
Hin1II CATG 4 cut(s) 33, 52, 101, 1133
HincII GTYRAC 2 cut(s) 537, 997
HindII GTYRAC 2 cut(s) 537, 997
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 6 cut(s) 135, 599, 634, 730, 1114, 1218
HpaII CCGG 4 cut(s) 218, 494, 515, 603
HphI GGTGA 2 cut(s) 141, 483
Hpy166II GTNNAC 4 cut(s) 241, 537, 655, 997
Hpy188I TCNGA 6 cut(s) 551, 666, 919, 944, 1009, 1031
Hpy188III TCNNGA 3 cut(s) 206, 752, 1092
Hpy8I GTNNAC 4 cut(s) 241, 537, 655, 997
HpyAV CCTTC 4 cut(s) 115, 215, 677, 691
HpyCH4III ACNGT 5 cut(s) 198, 238, 464, 541, 1001
HpyCH4V TGCA 4 cut(s) 292, 368, 1120, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 820, 1126
HpyF3I CTNAG 5 cut(s) 11, 228, 531, 753, 941
Hsp92II CATG 4 cut(s) 33, 52, 101, 1133
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
LmnI GCTCC 3 cut(s) 224, 666, 910
Lsp1109I GCAGC 3 cut(s) 12, 409, 656
LweI GCATC 4 cut(s) 12, 42, 604, 964
MabI ACCWGGT 1 cut(s) 830
MaeI CTAG 3 cut(s) 717, 986, 1261
MaeIII GTNAC 2 cut(s) 523, 791
MalI GATC 9 cut(s) 5, 9, 204, 321, 338, 434, 803, 1102, 1161
MboI GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
MboII GAAGA 3 cut(s) 283, 1204, 1235
MfeI CAATTG 1 cut(s) 952
MflI RGATCY 2 cut(s) 202, 801
MhlI GDGCHC 3 cut(s) 558, 940, 1041
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 4 cut(s) 173, 952, 1107, 1121
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 4 cut(s) 129, 608, 1108, 1212
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 8 cut(s) 223, 254, 296, 553, 759, 993, 1176, 1180
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 4 cut(s) 218, 494, 515, 603
MspR9I CCNGG 2 cut(s) 604, 832
MunI CAATTG 1 cut(s) 952
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 2 cut(s) 820, 1126
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 29
NdeII GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
NlaIII CATG 4 cut(s) 33, 52, 101, 1133
NlaIV GGNNCC 3 cut(s) 204, 803, 1038
NmuCI GTSAC 1 cut(s) 791
NspI RCATGY 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 2 cut(s) 634, 730
Pfl23II CGTACG 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 1070
PfoI TCCNGGA 1 cut(s) 602
PkrI GCNGC 4 cut(s) 27, 424, 513, 671
PleI GAGTC 4 cut(s) 129, 607, 1108, 1212
PpsI GAGTC 4 cut(s) 129, 607, 1108, 1212
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspLI CGTACG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 204, 803, 1038
PspPI GGNCC 2 cut(s) 241, 565
PsuI RGATCY 2 cut(s) 202, 801
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 5 cut(s) 171, 281, 386, 692, 704
RsaNI GTAC 5 cut(s) 170, 280, 385, 691, 703
SatI GCNGC 4 cut(s) 26, 423, 512, 670
Sau3AI GATC 9 cut(s) 3, 7, 202, 319, 336, 432, 801, 1100, 1159
Sau96I GGNCC 2 cut(s) 241, 565
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 4 cut(s) 129, 608, 1108, 1212
ScrFI CCNGG 2 cut(s) 604, 832
SduI GDGCHC 3 cut(s) 558, 940, 1041
SexAI ACCWGGT 1 cut(s) 830
SfaNI GCATC 4 cut(s) 12, 42, 604, 964
SfcI CTRYAG 1 cut(s) 460
SinI GGWCC 2 cut(s) 241, 565
Sse9I AATT 4 cut(s) 173, 952, 1107, 1121
SsiI CCGC 2 cut(s) 512, 563
SspMI CTAG 3 cut(s) 717, 986, 1261
StyD4I CCNGG 2 cut(s) 602, 830
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 5 cut(s) 198, 238, 464, 541, 1001
TaqI TCGA 5 cut(s) 6, 322, 816, 1206, 1221
TasI AATT 4 cut(s) 173, 952, 1107, 1121
TatI WGTACW 2 cut(s) 169, 690
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 2 cut(s) 634, 730
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 3 cut(s) 25, 422, 669
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 5 cut(s) 86, 97, 301, 981, 1141
TspRI CASTG 1 cut(s) 796
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 241, 565
XagI CCTNNNNNAGG 1 cut(s) 765
XceI RCATGY 1 cut(s) 1133
XspI CTAG 3 cut(s) 717, 986, 1261
ZrmI AGTACT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.