Rh1AG267700

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000733
Physical Location & Seq
Forward (+)
49485151 .. 49488114
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG267700.1

Sequence Viewer

Length: 1416 bp
ATGGCAAAAGAGCTTCATGTTGTGATTCTTCCATGGTCTGCCTTTGGCCATATCATCCCTTTGATTCAACTCTCCATAGCCTTAGCAAAAGCCAAGATTCATGTCTCCTTCATATCTACCCCCAAAAACATCCAAAGGCTCCCTAAAATCCCACCTGAGTTGCAATCTCTCATAACAATAGTGCCTTTTCCTTTGCCAACTTTGGATGCTGCAGATCGGCTGTTGCCTGAAGGCGCCGAGGCCACGGTGGACATACCTTTCGAGAAAATGGACGACTTGAAGTTTGCATTTGATCTTCTACGACAACCCTTTAAGCAGTTCATTGCTGATCAAGTGCCGGATTGGATCATCACCGATTTTGCCGCTCACTGGGCGGTTGACGTTGCCAGAGAGTATGGTGTTCCTGTTGCCTACTTCTCTCCTTTCTCTGCTGCTACGCATGTGTTCTGTGGTTCACTGGAATATCGCTCTCATGTTCCACCATCACCGGAAGTATTCACCTCCCCACCGGAGTGGGTTCCTTTTCCGTCTTTGTTAGCACTCAAGGAGTTTGAGGCAGTTCATTTTCTTGCTGGCTTTTTTAATGTGAATCGTTCAGGGATAAGTGATGCTGAAAGGGTTGCCAAGATTGTATCAGCGAGTCAAGTACTAGCCTTTCGTAGTTGCAATGAAATTGAAGGAGAGTACTTGGATTTGTACGCGAAACTCACCGGAAAACCTGTGATTCCCACCGGTTTGCTACCTCCAAAGGAATCAAAACGGGAGTCGGGGAACGATGTGATTTTTGAGTGGCTTGATAAGCAGAAACCCAGGTCAGTTGTGTTTGTAGGGTTTGGGAGTGAGTGTAAGGTGAGCAAAGAACAAGTGTATGAGATAGCTCATGGTCTGGAGCTTTCAGAGTTGCCATTTCTCTGGGCACTCAGAAAACCCAGTTGGGCTAGTACTGATGCTGAGGCTCTACCTCTAGGTTTTGTGGACAGAACATCAAAGAAAGGCCTTGTTTGCATGGGATGGGTGCCACAAATCGAAATTCTGGGGCACCCATCAGTCGGGGGTTCTCTGTTTCACTCTGGATGGGGTTCTGTGATTGAAACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTAATTGTTGATCAGCCTCTGAATGCAAGGCTTCTGGTGGAGAAAGGTCTGGCTGCCGAAGTGAAACGCAACGAAGATGGGTCGTTTACTGCAGACGACATAGCCAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACCTGAGAATCAATGCAAGGAAAGCTGCTTCTGTTTTTGGAGATGAGAAGCTGCACCAAGACCACTATCTTGGTGCATTTGTTGATTATCTCAAGAATAATGGTAGAAAAGGTCTTCTAGACAAGAATGATGACCCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

471

Amino Acids

52.26

Weight (kDa)

5.59

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 271 - 416 5e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 233, 1015, 1038
AccBSI CCGCTC 1 cut(s) 365
AccII CGCG 1 cut(s) 701
AciI CCGC 2 cut(s) 363, 374
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 1029
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 4 cut(s) 648, 686, 698, 943
AfiI CCNNNNNNNGG 2 cut(s) 369, 1049
AgeI ACCGGT 1 cut(s) 731
AgsI TTSAA 4 cut(s) 68, 280, 677, 1091
AjnI CCWGG 1 cut(s) 809
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 5 cut(s) 13, 878, 892, 1298, 1324
AluI AGCT 5 cut(s) 13, 878, 892, 1298, 1324
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 1147
AoxI GGCC 3 cut(s) 46, 240, 994
ApeKI GCWGC 5 cut(s) 209, 431, 1181, 1298, 1324
ApoI RAATTY 1 cut(s) 1029
ArsI GACNNNNNNTTYG 6 cut(s) 242, 266, 274, 298, 749, 781
AsiGI ACCGGT 1 cut(s) 731
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 5 cut(s) 343, 477, 490, 700, 862
AsuNHI GCTAGC 1 cut(s) 1246
BaeGI GKGCMC 2 cut(s) 919, 1041
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 3 cut(s) 233, 1015, 1038
BbsI GAAGAC 1 cut(s) 1379
Bbv12I GWGCWC 1 cut(s) 1275
BbvCI CCTCAGC 1 cut(s) 951
BbvI GCAGC 5 cut(s) 196, 418, 1168, 1285, 1311
BccI CCATC 5 cut(s) 490, 1005, 1051, 1068, 1199
BciT130I CCWGG 1 cut(s) 811
BclI TGATCA 2 cut(s) 328, 1138
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 5 cut(s) 650, 939, 965, 1247, 1391
BfmI CTRYAG 2 cut(s) 210, 1218
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 6 cut(s) 210, 363, 432, 1182, 1299, 1325
BlsI GCNGC 6 cut(s) 211, 364, 433, 1183, 1300, 1326
BmcAI AGTACT 3 cut(s) 648, 686, 943
Bme1390I CCNGG 1 cut(s) 811
BmiI GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
BmrFI CCNGG 1 cut(s) 811
BmrI ACTGGG 2 cut(s) 379, 924
BmsI GCATC 3 cut(s) 196, 598, 937
BmtI GCTAGC 1 cut(s) 1250
BmuI ACTGGG 2 cut(s) 379, 924
BpiI GAAGAC 1 cut(s) 1379
BpmI CTGGAG 1 cut(s) 908
Bpu10I CCTNAGC 2 cut(s) 82, 951
BpuEI CTTGAG 2 cut(s) 527, 1349
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 32, 237, 243, 809
BsaWI WCCGGW 4 cut(s) 487, 508, 710, 731
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 1049
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 3 cut(s) 374, 462, 930
Bse3DI GCAATG 4 cut(s) 321, 673, 1108, 1257
BseBI CCWGG 1 cut(s) 811
BseDI CCNNGG 4 cut(s) 32, 237, 243, 809
BseGI GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BseLI CCNNNNNNNGG 2 cut(s) 369, 1049
BseMI GCAATG 4 cut(s) 321, 673, 1108, 1257
BseMII CTCAG 5 cut(s) 147, 934, 942, 1232, 1268
BseNI ACTGG 3 cut(s) 374, 462, 930
BseSI GKGCMC 2 cut(s) 919, 1041
BseXI GCAGC 5 cut(s) 196, 418, 1168, 1285, 1311
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 1 cut(s) 701
BshFI GGCC 3 cut(s) 48, 242, 996
BshNI GGYRCC 3 cut(s) 233, 1015, 1038
BshTI ACCGGT 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 1275
BsiSI CCGG 5 cut(s) 338, 488, 509, 711, 732
BslI CCNNNNNNNGG 2 cut(s) 369, 1049
BsmAI GTCTC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 3 cut(s) 48, 242, 996
Bsp1286I GDGCHC 3 cut(s) 919, 1041, 1275
Bsp143I GATC 5 cut(s) 214, 292, 328, 345, 1138
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 363, 374
BspANI GGCC 3 cut(s) 48, 242, 996
BspCNI CTCAG 5 cut(s) 148, 933, 943, 1233, 1269
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
BspMAI CTGCAG 2 cut(s) 214, 1222
BspOI GCTAGC 1 cut(s) 1250
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 3 cut(s) 233, 1015, 1038
BsrBI CCGCTC 1 cut(s) 365
BsrDI GCAATG 4 cut(s) 321, 673, 1108, 1257
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 3 cut(s) 374, 462, 930
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 4 cut(s) 32, 237, 243, 809
BssMI GATC 5 cut(s) 214, 292, 328, 345, 1138
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 811
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 574, 1248
BstDEI CTNAG 6 cut(s) 82, 156, 920, 951, 1241, 1277
BstDSI CCRYGG 2 cut(s) 32, 243
BstF5I GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BstFNI CGCG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 5 cut(s) 217, 295, 331, 348, 1141
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 5 cut(s) 214, 292, 328, 345, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
BstNI CCWGG 1 cut(s) 811
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 809
BstSFI CTRYAG 2 cut(s) 210, 1218
BstSLI GKGCMC 2 cut(s) 919, 1041
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 5 cut(s) 196, 418, 1168, 1285, 1311
BstV2I GAAGAC 1 cut(s) 1379
BstXI CCANNNNNNTGG 3 cut(s) 513, 912, 1343
BsuRI GGCC 3 cut(s) 48, 242, 996
BtgI CCRYGG 2 cut(s) 32, 243
BtsCI GGATG 5 cut(s) 54, 129, 211, 1016, 1079
BtsIMutI CAGTG 3 cut(s) 367, 455, 1238
Cac8I GCNNGC 2 cut(s) 574, 1248
CaiI CAGNNNCTG 1 cut(s) 1147
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 731
Csp6I GTAC 4 cut(s) 647, 685, 697, 942
CspAI ACCGGT 1 cut(s) 731
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 17, 33, 101, 440, 473, 881, 1006
CviQI GTAC 4 cut(s) 647, 685, 697, 942
DdeI CTNAG 6 cut(s) 82, 156, 920, 951, 1241, 1277
DinI GGCGCC 1 cut(s) 235
DpnI GATC 5 cut(s) 216, 294, 330, 347, 1140
DpnII GATC 5 cut(s) 214, 292, 328, 345, 1138
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 1254
EarI CTCTTC 1 cut(s) 1254
Eco130I CCWWGG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 996
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 7 cut(s) 20, 36, 104, 443, 476, 884, 1009
FatI CATG 7 cut(s) 16, 32, 100, 439, 472, 880, 1005
FbaI TGATCA 2 cut(s) 328, 1138
Fnu4HI GCNGC 6 cut(s) 210, 363, 432, 1182, 1299, 1325
FokI GGATG 5 cut(s) 41, 116, 218, 1023, 1086
Fsp4HI GCNGC 6 cut(s) 210, 363, 432, 1182, 1299, 1325
FspBI CTAG 5 cut(s) 650, 939, 965, 1247, 1391
GlaI GCGC 1 cut(s) 235
GluI GCNGC 6 cut(s) 210, 363, 432, 1182, 1299, 1325
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 3 cut(s) 48, 242, 996
HapII CCGG 5 cut(s) 338, 488, 509, 711, 732
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 7 cut(s) 20, 36, 104, 443, 476, 884, 1009
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 9 cut(s) 25, 64, 97, 589, 640, 724, 752, 764, 1281
HpaII CCGG 5 cut(s) 338, 488, 509, 711, 732
HphI GGTGA 5 cut(s) 343, 477, 490, 700, 862
Hpy166II GTNNAC 5 cut(s) 250, 379, 455, 976, 1215
Hpy188I TCNGA 3 cut(s) 898, 923, 1149
Hpy188III TCNNGA 5 cut(s) 262, 887, 1071, 1366, 1391
Hpy8I GTNNAC 5 cut(s) 250, 379, 455, 976, 1215
HpyAV CCTTC 4 cut(s) 118, 224, 671, 1259
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
HpyF3I CTNAG 6 cut(s) 82, 156, 920, 951, 1241, 1277
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 7 cut(s) 20, 36, 104, 443, 476, 884, 1009
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 2 cut(s) 328, 1138
Kzo9I GATC 5 cut(s) 214, 292, 328, 345, 1138
LmnI GCTCC 2 cut(s) 144, 889
Lsp1109I GCAGC 5 cut(s) 196, 418, 1168, 1285, 1311
LweI GCATC 3 cut(s) 196, 598, 937
MaeI CTAG 5 cut(s) 650, 939, 965, 1247, 1391
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 1122
MalI GATC 5 cut(s) 216, 294, 330, 347, 1140
MbiI CCGCTC 1 cut(s) 365
MboI GATC 5 cut(s) 214, 292, 328, 345, 1138
MboII GAAGA 5 cut(s) 20, 287, 1214, 1271, 1379
MhlI GDGCHC 3 cut(s) 919, 1041, 1275
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 672, 1029, 1100, 1131
MluNI TGGCCA 1 cut(s) 48
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 649, 773
MnlI CCTC 9 cut(s) 232, 511, 547, 753, 946, 972, 1155, 1236, 1255
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 312, 582, 1130
MslI CAYNNNNRTG 1 cut(s) 511
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 5 cut(s) 338, 488, 509, 711, 732
MspR9I CCNGG 1 cut(s) 811
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 1 cut(s) 811
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 5 cut(s) 371, 799, 1002, 1105, 1295
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 32
NdeII GATC 5 cut(s) 214, 292, 328, 345, 1138
NheI GCTAGC 1 cut(s) 1246
NlaIII CATG 7 cut(s) 20, 36, 104, 443, 476, 884, 1009
NlaIV GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
NmeAIII GCCGAG 1 cut(s) 262
NspI RCATGY 1 cut(s) 443
OliI CACNNNNGTG 1 cut(s) 511
PceI AGGCCT 1 cut(s) 996
PctI GAATGC 1 cut(s) 1156
PfeI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1281
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 6 cut(s) 211, 364, 433, 1183, 1300, 1326
PleI GAGTC 2 cut(s) 648, 772
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 2 cut(s) 648, 772
Psp6I CCWGG 1 cut(s) 809
PspGI CCWGG 1 cut(s) 809
PspN4I GGNNCC 5 cut(s) 140, 235, 519, 1017, 1040
PstI CTGCAG 2 cut(s) 214, 1222
PstNI CAGNNNCTG 1 cut(s) 1147
RsaI GTAC 4 cut(s) 648, 686, 698, 943
RsaNI GTAC 4 cut(s) 647, 685, 697, 942
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 3 cut(s) 312, 582, 1130
SatI GCNGC 6 cut(s) 210, 363, 432, 1182, 1299, 1325
Sau3AI GATC 5 cut(s) 214, 292, 328, 345, 1138
ScaI AGTACT 3 cut(s) 648, 686, 943
SchI GAGTC 2 cut(s) 649, 773
ScrFI CCNGG 1 cut(s) 811
SduI GDGCHC 3 cut(s) 919, 1041, 1275
SfaNI GCATC 3 cut(s) 196, 598, 937
SfcI CTRYAG 2 cut(s) 210, 1218
SfoI GGCGCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 542, 1364
SmoI CTYRAG 2 cut(s) 542, 1364
Sse9I AATT 4 cut(s) 672, 1029, 1100, 1131
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 2 cut(s) 363, 374
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 5 cut(s) 650, 939, 965, 1247, 1391
StuI AGGCCT 1 cut(s) 996
StyD4I CCNGG 1 cut(s) 809
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 261, 1026
TasI AATT 4 cut(s) 672, 1029, 1100, 1131
TatI WGTACW 3 cut(s) 646, 684, 941
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 7 cut(s) 25, 64, 97, 589, 724, 752, 1281
Tru1I TTAA 3 cut(s) 312, 582, 1130
Tru9I TTAA 3 cut(s) 312, 582, 1130
TscAI CASTG 3 cut(s) 374, 462, 1245
TseI GCWGC 5 cut(s) 209, 431, 1181, 1298, 1324
TspDTI ATGAA 6 cut(s) 5, 89, 100, 310, 551, 684
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 3 cut(s) 374, 462, 1245
XapI RAATTY 1 cut(s) 1029
XbaI TCTAGA 1 cut(s) 1390
XceI RCATGY 1 cut(s) 443
XspI CTAG 5 cut(s) 650, 939, 965, 1247, 1391
ZrmI AGTACT 3 cut(s) 648, 686, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.