Rw1G023630

UDP-rhamnose rhamnosyltransferase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000733
Physical Location & Seq
Forward (+)
49574531 .. 49575036
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023630.1

Sequence Viewer

Length: 429 bp
ATGGAAAAAGAACTTCATGTCGTGATGATTCCATGGTCTGCCTTTGGCCATATCATGCCTTTCTTTCAACTCTCCCTGGCCTTAGCAAAAGCCAAAGTTCACGTCTCCTTCATATCCACCACAAAAAACATCCAAAGGATCCCAAAATTCTCACCTGATTTGCAATCCTTGATCCACTTTGTGGTCATTCCGAGCAGAAGTCACTATGGACGTCCCTTTGAAAAAATCGACAACTTTCACATTGCATATGATCTCCTACAACAACCCATTAAGCAGCTCATTGCAGACCAAATGCCGGATTGGATAATAGCAGATTTTACTGCTCATTGGGTGGTTGAGATTGCCAAAGAGTATGTGTTTTATTTGGCTCACGTGACAATCTCACTGGTGCAAACAGAAACTATGCTCTCCCGTCACCAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

142

Amino Acids

16.51

Weight (kDa)

8.07

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 181
AclWI GGATC 3 cut(s) 133, 146, 166
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 146
AcvI CACGTG 1 cut(s) 373
AcyI GRCGYC 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 181
AfiI CCNNNNNNNGG 2 cut(s) 181, 295
AgsI TTSAA 2 cut(s) 68, 221
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 277, 425
AluI AGCT 2 cut(s) 277, 425
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 3 cut(s) 133, 146, 166
AoxI GGCC 2 cut(s) 46, 78
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AsuHPI GGTGA 2 cut(s) 144, 407
BalI TGGCCA 1 cut(s) 48
BamHI GGATCC 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 373
BbvI GCAGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 109
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 77
BmgBI CACGTC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 373
BsaHI GRCGYC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 32, 75
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 295
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 2 cut(s) 240, 279
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 32, 75
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 181, 295
BseMI GCAATG 2 cut(s) 240, 279
BseNI ACTGG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 2 cut(s) 48, 80
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 181, 295
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 48, 80
Bsp143I GATC 3 cut(s) 138, 171, 250
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 2 cut(s) 48, 80
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 3 cut(s) 133, 146, 166
BsrDI GCAATG 2 cut(s) 240, 279
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 32, 75
BssMI GATC 3 cut(s) 138, 171, 250
BssNI GRCGYC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 211
BstBAI YACGTR 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 3 cut(s) 141, 174, 253
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 138, 171, 250
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 2 cut(s) 48, 80
BtgI CCRYGG 1 cut(s) 32
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 383
CviAII CATG 3 cut(s) 17, 33, 55
CviJI RGCY 6 cut(s) 48, 80, 92, 277, 368, 425
CviKI_1 RGCY 6 cut(s) 48, 80, 92, 277, 368, 425
DdeI CTNAG 1 cut(s) 82
DpnI GATC 3 cut(s) 140, 173, 252
DpnII GATC 3 cut(s) 138, 171, 250
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 3 cut(s) 20, 36, 58
FaqI GGGAC 1 cut(s) 198
FatI CATG 3 cut(s) 16, 32, 54
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 48, 80
HapII CCGG 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 211
Hin1II CATG 3 cut(s) 20, 36, 58
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 296
HphI GGTGA 2 cut(s) 144, 407
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 3 cut(s) 102, 211, 372
HpyCH4V TGCA 4 cut(s) 163, 245, 284, 391
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 3 cut(s) 102, 211, 372
Hsp92I GRCGYC 1 cut(s) 211
Hsp92II CATG 3 cut(s) 20, 36, 58
Kzo9I GATC 3 cut(s) 138, 171, 250
LpnPI CCDG 5 cut(s) 62, 89, 168, 309, 371
Lsp1109I GCAGC 1 cut(s) 286
MaeII ACGT 3 cut(s) 102, 211, 372
MaeIII GTNAC 3 cut(s) 200, 373, 413
MalI GATC 3 cut(s) 140, 173, 252
MboI GATC 3 cut(s) 138, 171, 250
MflI RGATCY 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 247
NdeII GATC 3 cut(s) 138, 171, 250
NlaIII CATG 3 cut(s) 20, 36, 58
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 3 cut(s) 200, 373, 413
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 1 cut(s) 276
PmaCI CACGTG 1 cut(s) 373
PmlI CACGTG 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 75
PspCI CACGTG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 3 cut(s) 138, 171, 250
ScrFI CCNGG 1 cut(s) 77
SetI ASST 6 cut(s) 105, 157, 214, 279, 375, 427
Sse9I AATT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 32
TaiI ACGT 3 cut(s) 105, 214, 375
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 146
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 3 cut(s) 200, 373, 413
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 3 cut(s) 200, 373, 413
TspDTI ATGAA 2 cut(s) 5, 100
TspRI CASTG 1 cut(s) 390
Van91I CCANNNNNTGG 1 cut(s) 181
XapI RAATTY 1 cut(s) 146
ZraI GACGTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.