FvH4_3g16711

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000865
Physical Location & Seq
Forward (+)
10533258 .. 10534936
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16711.t1

Sequence Viewer

Length: 1230 bp
ATGGCGGAACTAGCAATTCCGTTATCATTGATGATGGCCGAGAAGGCGATGAGCTTGTTTGAAAGATACGAGTTCAACGACGGAAGCAGCCTAATGCTTCAAAATCGTGTTGAAGAGGTCCAAACTCTGGCTTATGAAATTGAAGACGCTCTTGACAAGTTCATGGCAGTGATGGCACAGATTCAACATCACTTCCACAGCAACATGTTCTCTCAGAAGCTACACGAAGTTGCACATTATCGCACAGAAAGGAATGCAAAACTTGAGTTCTCCGCCACCAAGATTAAAAATGTTGAAATGAAAATTAGTTCCTTCTCAGGACTAGATTCACTTCTTGAGCCACCAAGTTACAGTACAAGACATAGAGATAGTTTGATCCTCCACCAAGTTCTTGCAGAAGAAGAAATCGTAGGCTTCAAGGAGCCTAGAGAAAGACTTACCAAACAGTTAATGGAAGCAGATCTGAGGCTGTTGATGATTTTGATTGTTGGTCCTGGAGGCTCCGGCAAAACCACTGTCGCGAAGAATGTTTATGAGAGCAATAAGTGGGCTAAAAAATTCTTGAAGAAGTGTGAAGGTCTGCCCCTTGTAGTTTCAGCTATTGCTATTTTGCTGGCAAACAAGCCACAAACTCCAGTTGAGTGGAAGAAGTTACATGAAAGCCTTGGGTCTGAAATCAGACCTCATTTTAGTCTTTCGATTATTAGCCGTGTCTTGCAGCCAAGTTACATACATCTTCCGAGCCATCTAAAGATATGTTTGTCGTACTTTGGCATTTTTCCAGAAGACCATTCAATCAGCCGTGATAGGCTGATTCGGTTGTGGTCAGCTGAGGGATTTATAACACCAGGAAAGGGACAAACAATGGAGGAAGCTGGGGAAAGTTATCTCAGTGAATTCATTGGAAGGAATTTGGTTCGTGTCACCACAAGAGAGATGGATGGTCGTGCAAGGAGCCGTCGTGTTTTGAACCTTGTTCGAGAGTTCATTATTTCAAAAGCGGGGAACTTCATCACTGTATTGGAACCAAACTACAGTATTCATTCAGGGGAGAAAATTTGGCGCCTTTCAGTTCAAAATGTAAATATCAATTTGTTAAAGGCTAAGGATTTGAGTCATATTCGTACCTTACTAGTGTTTGGGCTGGCAAGTTCCCCTTCTGAGGTTGAAGAGGTACTCAAGGTCTCTACAGTTAGATTTGCAAGGTGTACCTTTGAAGAACTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

410

Amino Acids

46.58

Weight (kDa)

8.57

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 259 - 330 6.1e-18 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 1062
AccB7I CCANNNNNTGG 1 cut(s) 127
AccII CGCG 1 cut(s) 521
AciI CCGC 3 cut(s) 5, 273, 1001
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 4 cut(s) 557, 896, 910, 1056
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 5 cut(s) 355, 767, 1126, 1176, 1210
AfiI CCNNNNNNNGG 3 cut(s) 127, 854, 1162
AflIII ACRYGT 1 cut(s) 204
AhlI ACTAGT 1 cut(s) 1132
AjnI CCWGG 2 cut(s) 493, 847
AluBI AGCT 5 cut(s) 54, 220, 599, 830, 875
AluI AGCT 5 cut(s) 54, 220, 599, 830, 875
Alw26I GTCTC 1 cut(s) 1189
AlwI GGATC 1 cut(s) 370
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 87, 718
ApoI RAATTY 4 cut(s) 557, 896, 910, 1056
ArsI GACNNNNNNTTYG 2 cut(s) 501, 533
Asp700I GAANNNNTTC 1 cut(s) 1221
AspLEI GCGC 1 cut(s) 1065
AspS9I GGNCC 2 cut(s) 118, 491
AsuHPI GGTGA 1 cut(s) 916
AvaII GGWCC 2 cut(s) 118, 491
BanI GGYRCC 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 150, 792
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 99, 730
BccI CCATC 5 cut(s) 28, 166, 753, 931, 935
BceAI ACGGC 3 cut(s) 693, 786, 942
BciT130I CCWGG 2 cut(s) 495, 849
BcoDI GTCTC 1 cut(s) 1189
BcuI ACTAGT 1 cut(s) 1132
BfaI CTAG 4 cut(s) 11, 323, 426, 1133
BfmI CTRYAG 2 cut(s) 1033, 1188
BfoI RGCGCY 1 cut(s) 1066
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 460
BisI GCNGC 2 cut(s) 88, 719
BlsI GCNGC 2 cut(s) 89, 720
Bme1390I CCNGG 2 cut(s) 495, 849
Bme18I GGWCC 2 cut(s) 118, 491
BmgT120I GGNCC 2 cut(s) 118, 491
BmiI GGNNCC 5 cut(s) 423, 502, 956, 1026, 1064
BmrFI CCNGG 2 cut(s) 495, 849
BpiI GAAGAC 2 cut(s) 150, 792
BpmI CTGGAG 2 cut(s) 516, 618
Bpu10I CCTNAGC 2 cut(s) 831, 1104
BpuEI CTTGAG 3 cut(s) 284, 356, 1163
BsaHI GRCGYC 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 1189
BsaJI CCNNGG 1 cut(s) 664
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 854, 1162
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 2 cut(s) 495, 849
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 1 cut(s) 946
BseLI CCNNNNNNNGG 3 cut(s) 127, 854, 1162
BseMII CTCAG 6 cut(s) 227, 330, 455, 822, 904, 1152
BseNI ACTGG 1 cut(s) 635
BseXI GCAGC 2 cut(s) 99, 730
BseYI CCCAGC 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 3 cut(s) 127, 854, 1162
BsmAI GTCTC 1 cut(s) 1189
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 1189
Bsp143I GATC 2 cut(s) 375, 460
Bsp68I TCGCGA 1 cut(s) 521
BspACI CCGC 3 cut(s) 5, 273, 1001
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 6 cut(s) 226, 329, 456, 823, 903, 1153
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 5 cut(s) 423, 502, 956, 1026, 1064
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 1062
BspTNI GGTCTC 1 cut(s) 1189
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 2 cut(s) 375, 460
BssNI GRCGYC 1 cut(s) 1063
BssT1I CCWWGG 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 495, 849
Bst4CI ACNGT 6 cut(s) 353, 447, 517, 1018, 1037, 1192
Bst6I CTCTTC 2 cut(s) 108, 1164
BstACI GRCGYC 1 cut(s) 1063
BstC8I GCNNGC 2 cut(s) 615, 1146
BstDEI CTNAG 7 cut(s) 213, 316, 464, 831, 890, 1104, 1161
BstF5I GGATG 1 cut(s) 946
BstFNI CGCG 1 cut(s) 521
BstH2I RGCGCY 1 cut(s) 1066
BstHHI GCGC 1 cut(s) 1065
BstKTI GATC 2 cut(s) 378, 463
BstMAI GTCTC 1 cut(s) 1189
BstMBI GATC 2 cut(s) 375, 460
BstMWI GCNNNNNNNGC 3 cut(s) 11, 44, 173
BstNI CCWGG 2 cut(s) 495, 849
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 493, 847
BstSFI CTRYAG 2 cut(s) 1033, 1188
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 99, 730
BstV2I GAAGAC 2 cut(s) 150, 792
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 946
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 4 cut(s) 174, 513, 898, 1014
BtuMI TCGCGA 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 615, 1146
CfoI GCGC 1 cut(s) 1065
Cfr13I GGNCC 2 cut(s) 118, 491
CseI GACGC 1 cut(s) 155
Csp6I GTAC 5 cut(s) 354, 766, 1125, 1175, 1209
CviAII CATG 3 cut(s) 163, 205, 656
CviQI GTAC 5 cut(s) 354, 766, 1125, 1175, 1209
DdeI CTNAG 7 cut(s) 213, 316, 464, 831, 890, 1104, 1161
DinI GGCGCC 1 cut(s) 1064
DpnI GATC 2 cut(s) 377, 462
DpnII GATC 2 cut(s) 375, 460
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 108, 1164
EarI CTCTTC 2 cut(s) 108, 1164
EciI GGCGGA 2 cut(s) 20, 262
Eco130I CCWWGG 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 1189
Eco47I GGWCC 2 cut(s) 118, 491
EcoRI GAATTC 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 493, 847
EcoT14I CCWWGG 1 cut(s) 664
EgeI GGCGCC 1 cut(s) 1064
EheI GGCGCC 1 cut(s) 1064
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 3 cut(s) 166, 208, 659
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 1141, 1173
FaqI GGGAC 1 cut(s) 870
FatI CATG 3 cut(s) 162, 204, 655
FauI CCCGC 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 88, 719
FokI GGATG 1 cut(s) 953
Fsp4HI GCNGC 2 cut(s) 88, 719
FspBI CTAG 4 cut(s) 11, 323, 426, 1133
GlaI GCGC 1 cut(s) 1064
GluI GCNGC 2 cut(s) 88, 719
GsaI CCCAGC 1 cut(s) 879
GsuI CTGGAG 2 cut(s) 516, 618
HaeII RGCGCY 1 cut(s) 1066
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 1065
Hin1I GRCGYC 1 cut(s) 1063
Hin1II CATG 3 cut(s) 166, 208, 659
Hin6I GCGC 1 cut(s) 1063
HinP1I GCGC 1 cut(s) 1063
HinfI GANTC 4 cut(s) 181, 326, 814, 1114
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 916
Hpy166II GTNNAC 1 cut(s) 1209
Hpy188I TCNGA 6 cut(s) 216, 465, 673, 680, 741, 1162
Hpy188III TCNNGA 7 cut(s) 152, 318, 335, 520, 562, 782, 980
Hpy8I GTNNAC 1 cut(s) 1209
Hpy99I CGWCG 2 cut(s) 83, 963
HpyAV CCTTC 5 cut(s) 37, 322, 569, 900, 1167
HpyCH4III ACNGT 6 cut(s) 353, 447, 517, 1018, 1037, 1192
HpyCH4V TGCA 6 cut(s) 233, 257, 395, 718, 950, 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 44, 173
HpyF3I CTNAG 7 cut(s) 213, 316, 464, 831, 890, 1104, 1161
Hsp92I GRCGYC 1 cut(s) 1063
Hsp92II CATG 3 cut(s) 166, 208, 659
HspAI GCGC 1 cut(s) 1063
KasI GGCGCC 1 cut(s) 1062
Kzo9I GATC 2 cut(s) 375, 460
LmnI GCTCC 3 cut(s) 421, 506, 954
Lsp1109I GCAGC 2 cut(s) 99, 730
MaeI CTAG 4 cut(s) 11, 323, 426, 1133
MaeIII GTNAC 4 cut(s) 347, 651, 725, 922
MalI GATC 2 cut(s) 377, 462
MboI GATC 2 cut(s) 375, 460
MflI RGATCY 1 cut(s) 460
MluCI AATT 8 cut(s) 15, 138, 303, 557, 896, 910, 1056, 1090
Mly113I GGCGCC 1 cut(s) 1063
MlyI GAGTC 1 cut(s) 1123
MnlI CCTC 9 cut(s) 109, 389, 459, 491, 693, 826, 862, 1156, 1165
MroXI GAANNNNTTC 1 cut(s) 1221
MseI TTAA 3 cut(s) 285, 449, 1097
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 2 cut(s) 495, 849
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 2 cut(s) 495, 849
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 3 cut(s) 11, 44, 173
NarI GGCGCC 1 cut(s) 1063
NdeII GATC 2 cut(s) 375, 460
NlaIII CATG 3 cut(s) 166, 208, 659
NlaIV GGNNCC 5 cut(s) 423, 502, 956, 1026, 1064
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 922
NruI TCGCGA 1 cut(s) 521
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 3 cut(s) 181, 326, 814
PflMI CCANNNNNTGG 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 2 cut(s) 89, 720
PleI GAGTC 1 cut(s) 1122
PluTI GGCGCC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1122
PscI ACATGT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 493, 847
PspFI CCCAGC 1 cut(s) 875
PspGI CCWGG 2 cut(s) 493, 847
PspN4I GGNNCC 5 cut(s) 423, 502, 956, 1026, 1064
PspPI GGNCC 2 cut(s) 118, 491
PsuI RGATCY 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 830
RruI TCGCGA 1 cut(s) 521
RsaI GTAC 5 cut(s) 355, 767, 1126, 1176, 1210
RsaNI GTAC 5 cut(s) 354, 766, 1125, 1175, 1209
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 3 cut(s) 285, 449, 1097
SatI GCNGC 2 cut(s) 88, 719
Sau3AI GATC 2 cut(s) 375, 460
Sau96I GGNCC 2 cut(s) 118, 491
SchI GAGTC 1 cut(s) 1123
ScrFI CCNGG 2 cut(s) 495, 849
SfcI CTRYAG 2 cut(s) 1033, 1188
SfoI GGCGCC 1 cut(s) 1064
SinI GGWCC 2 cut(s) 118, 491
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 263, 335, 1178
SmoI CTYRAG 3 cut(s) 263, 335, 1178
SpeI ACTAGT 1 cut(s) 1132
Sse9I AATT 8 cut(s) 15, 138, 303, 557, 896, 910, 1056, 1090
SsiI CCGC 3 cut(s) 5, 273, 1001
SspDI GGCGCC 1 cut(s) 1062
SspMI CTAG 4 cut(s) 11, 323, 426, 1133
StyD4I CCNGG 2 cut(s) 493, 847
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 6 cut(s) 353, 447, 517, 1018, 1037, 1192
TaqI TCGA 2 cut(s) 698, 979
TasI AATT 8 cut(s) 15, 138, 303, 557, 896, 910, 1056, 1090
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 3 cut(s) 181, 326, 814
Tru1I TTAA 3 cut(s) 285, 449, 1097
Tru9I TTAA 3 cut(s) 285, 449, 1097
TscAI CASTG 4 cut(s) 174, 520, 898, 1021
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 2 cut(s) 87, 718
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 8 cut(s) 150, 151, 314, 672, 889, 976, 1000, 1031
TspGWI ACGGA 2 cut(s) 9, 96
TspRI CASTG 4 cut(s) 174, 520, 898, 1021
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 118, 491
XapI RAATTY 4 cut(s) 557, 896, 910, 1056
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 2 cut(s) 448, 934
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 4 cut(s) 11, 323, 426, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.