Rroxscaffold_1G00051790

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000865
Physical Location & Seq
Reverse (-)
72544927 .. 72545514
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051790.1

Sequence Viewer

Length: 588 bp
ATGAGAGAGCTTTCGACACTTGACATACGATCAACAAGTGAGGACGAGTATCTTGATTTGGATCATATGAACTCCCCTGATGGGCCTCCTCGCTATCTACAACGTCTCTCTTTGACAGGGCGCCTGGAGAGTCTGCCGCAGTGGATCTCCCAGCTTCATAGTCTAGCTAGGATTGCTTTAAAGAGATCAAAATTGGATGCTGATTCCAGCTCACTTGAGGCCCTTCAAGATTTGCCTAATCTTGTGGAGCTCGAGTTGGTTGACTTTTATACTGGGGATTTGTTGAAGTTCAGAGCTAAAAAGTTCAAGAAACTACAGGTATTACGCATTGAGCAATTTGATGAGCTAGATATGATGATAATCGAGGATGGAGCAATGCCTGAGCTTAAGAGGCTAACATTGTCTAAATGTCTAAATCTAAAGTTACTTCTATTTGGCATTGGTAGTCTTATGTTGCTCGAAGAATTTCTTCTGCATGAGATGCCTGATGAATTTATTGCTAAGCTTCAAATGAATAGCGAGGAGCAGTACTTAGTTGAGAATGTCCGAGTCATCCAACCATTCTGCGGTGGAAGCACTGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

195

Amino Acids

22.41

Weight (kDa)

4.84

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 1 - 155 3e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 2 cut(s) 137, 567
AclWI GGATC 2 cut(s) 69, 152
AcsI RAATTY 2 cut(s) 464, 491
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 2 cut(s) 81, 566
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 227, 286, 307, 509
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 9 cut(s) 10, 154, 167, 210, 250, 296, 346, 385, 505
AluI AGCT 9 cut(s) 10, 154, 167, 210, 250, 296, 346, 385, 505
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 69, 152
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 2 cut(s) 83, 219
ApoI RAATTY 2 cut(s) 464, 491
Asp700I GAANNNNTTC 2 cut(s) 465, 468
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 83, 220
AvaI CYCGRG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 2 cut(s) 74, 362
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 3 cut(s) 164, 168, 347
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 137
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 83, 220
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 187, 471, 572
BmuI ACTGGG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 2 cut(s) 60, 359
BsaHI GRCGYC 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 566
Bse1I ACTGG 2 cut(s) 277, 583
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 2 cut(s) 60, 359
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 4 cut(s) 202, 373, 552, 587
BseJI GATNNNNATC 2 cut(s) 60, 359
BseLI CCNNNNNNNGG 2 cut(s) 81, 566
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 277, 583
BseRI GAGGAG 2 cut(s) 78, 536
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 2 cut(s) 85, 221
BshNI GGYRCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 81, 566
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 85, 221
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 4 cut(s) 29, 61, 144, 185
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 2 cut(s) 137, 567
BspANI GGCC 2 cut(s) 85, 221
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 2 cut(s) 69, 152
BspT107I GGYRCC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 2 cut(s) 277, 583
BssMI GATC 4 cut(s) 29, 61, 144, 185
BssNI GRCGYC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 386
BstAPI GCANNNNNTGC 2 cut(s) 481, 582
BstDEI CTNAG 3 cut(s) 381, 501, 532
BstF5I GGATG 4 cut(s) 202, 373, 552, 587
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 4 cut(s) 32, 64, 147, 188
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 4 cut(s) 29, 61, 144, 185
BstMWI GCNNNNNNNGC 5 cut(s) 173, 391, 481, 573, 582
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 2 cut(s) 85, 221
BtsCI GGATG 4 cut(s) 202, 373, 552, 587
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 146, 576
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 83, 220
Csp6I GTAC 1 cut(s) 529
CviAII CATG 1 cut(s) 476
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 3 cut(s) 381, 501, 532
DinI GGCGCC 1 cut(s) 122
DpnI GATC 4 cut(s) 31, 63, 146, 187
DpnII GATC 4 cut(s) 29, 61, 144, 185
DraI TTTAAA 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 479
FaiI YATR 8 cut(s) 26, 66, 68, 159, 270, 353, 452, 477
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 1 cut(s) 475
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 3 cut(s) 209, 380, 539
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 3 cut(s) 164, 168, 347
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 2 cut(s) 85, 221
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 130, 203, 549
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 293, 548
Hpy188III TCNNGA 3 cut(s) 53, 227, 307
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 391, 481, 573, 582
HpyF3I CTNAG 3 cut(s) 381, 501, 532
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
Kzo9I GATC 4 cut(s) 29, 61, 144, 185
LmnI GCTCC 3 cut(s) 247, 371, 523
LweI GCATC 3 cut(s) 187, 471, 572
MaeI CTAG 3 cut(s) 164, 168, 347
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 423
MalI GATC 4 cut(s) 31, 63, 146, 187
MboI GATC 4 cut(s) 29, 61, 144, 185
MboII GAAGA 2 cut(s) 461, 473
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 4 cut(s) 191, 335, 464, 491
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 2 cut(s) 139, 558
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 7 cut(s) 34, 96, 99, 211, 358, 384, 514
MroXI GAANNNNTTC 2 cut(s) 465, 468
MseI TTAA 2 cut(s) 179, 387
MspCI CTTAAG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 5 cut(s) 173, 391, 481, 573, 582
NarI GGCGCC 1 cut(s) 121
NdeI CATATG 1 cut(s) 66
NdeII GATC 4 cut(s) 29, 61, 144, 185
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 465, 468
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 2 cut(s) 138, 557
PluTI GGCGCC 1 cut(s) 124
PpsI GAGTC 2 cut(s) 138, 557
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 83, 220
PspXI VCTCGAGB 1 cut(s) 251
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 179, 387
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 4 cut(s) 29, 61, 144, 185
Sau96I GGNCC 2 cut(s) 83, 220
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 139, 558
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 252
SfaNI GCATC 3 cut(s) 187, 471, 572
SfcI CTRYAG 1 cut(s) 314
SfoI GGCGCC 1 cut(s) 122
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 3 cut(s) 215, 251, 386
SmoI CTYRAG 3 cut(s) 215, 251, 386
Sse9I AATT 4 cut(s) 191, 335, 464, 491
SsiI CCGC 2 cut(s) 137, 567
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 3 cut(s) 164, 168, 347
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 106
TaqI TCGA 4 cut(s) 14, 252, 363, 459
TasI AATT 4 cut(s) 191, 335, 464, 491
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 179, 387
Tru9I TTAA 2 cut(s) 179, 387
TscAI CASTG 2 cut(s) 146, 583
TspDTI ATGAA 4 cut(s) 83, 146, 504, 527
TspRI CASTG 2 cut(s) 146, 583
Vha464I CTTAAG 1 cut(s) 386
XapI RAATTY 2 cut(s) 464, 491
XhoI CTCGAG 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 465, 468
XspI CTAG 3 cut(s) 164, 168, 347
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.