Rorug05G0101800

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
8969863 .. 8970207
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0101800.1

Sequence Viewer

Length: 345 bp
ATGGGTTGGGAGTGCTGGTTGCAACTAAGCCTCAAGAGGCTAAAGGAAGTCGAGTCCGAAACTTTCGAGTTCGCATTGGTCGTGTTCTCATATTATATACTCACCGATCCAGAGCAACGAGAAAGTTTCAACGATTGGAGAAGACTAGCAACGTCGTTAGAAAGACTGAAGATCATCAACAGAGAAAAAGAGAAGATGGAGGAGTACGAGTTAATGTCTCCTGATGATTTGTTACGGGTTTGGAAATTATATCCGTGGAATGTGGATGGTTGGTGGGCTGCTAGTAATTCTGCCGGTTTGGATTCCGGCAAGGCTTTGTTGGCTGATAGGAAGATCAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.64

Weight (kDa)

5.09

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 190, 260
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 146, 282
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 3 cut(s) 32, 194, 224
Bse118I RCCGGY 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 294, 306
BsmAI GTCTC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 106, 171, 333
BspPI GGATC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 106, 171, 333
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 109, 174, 336
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 106, 171, 333
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 293
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 6 cut(s) 30, 40, 278, 314, 323, 340
CviKI_1 RGCY 6 cut(s) 30, 40, 278, 314, 323, 340
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 26
DpnI GATC 3 cut(s) 108, 173, 335
DpnII GATC 3 cut(s) 106, 171, 333
Eco57I CTGAAG 1 cut(s) 188
FaiI YATR 4 cut(s) 91, 96, 98, 250
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 146, 282
GluI GCNGC 1 cut(s) 279
HapII CCGG 2 cut(s) 294, 306
HinfI GANTC 2 cut(s) 53, 302
HpaII CCGG 2 cut(s) 294, 306
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 3 cut(s) 34, 110, 221
Hpy99I CGWCG 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 152
Kzo9I GATC 3 cut(s) 106, 171, 333
LpnPI CCDG 4 cut(s) 123, 234, 307, 319
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 2 cut(s) 146, 282
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 231
MalI GATC 3 cut(s) 108, 173, 335
MboI GATC 3 cut(s) 106, 171, 333
MboII GAAGA 4 cut(s) 153, 181, 205, 343
MluCI AATT 2 cut(s) 245, 286
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 30, 41, 193
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 294, 306
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 3 cut(s) 106, 171, 333
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 106, 171, 333
SchI GAGTC 1 cut(s) 62
SetI ASST 2 cut(s) 155, 342
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 245, 286
SspMI CTAG 2 cut(s) 146, 282
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 51, 66
TasI AATT 2 cut(s) 245, 286
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseI GCWGC 1 cut(s) 278
TspGWI ACGGA 1 cut(s) 243
XspI CTAG 2 cut(s) 146, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.