Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006599.1

Orthogroup ID

OG0000865

Physical Location & Seq

Genomic Coordinates Reverse (-)

9360 .. 10351

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006599.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggctgaagttacctttcctgtagcactggccttaattgacaaggtgataagcatcgtccagcaaaactttcaacgtcaaactagagtcaaggatgatgttgaaaaagcccagaattacttgaggaggatggaagcgtatctagccgactcatcagaagttcagaacatgtcgatgagggcactcgagtgtttcagactcgagaacgcaggcaaggagtcgtcgactgagattaatggtattatcgacaaaaaatttggttggattacagcactagatgctctgcataaccaagctccaactccagttgagtggaagaatttccataacagccttggatcagaaattagaccagactcaaatctttcggttattagccgtattttacagccaagttacgaggatcttccaacccatctgaaaccttgtttcttgtacttcagcatttttcctgaagactactctatcgggcgtcaaaggctaattcgtttgtggatagctgaaggatttgtgaagaccaaaagaggaacgacaatggaaaaggtggcagaaggttatctgaatgagctcgttggaagaaatttggtgcataccagcgccagggaaatcgatggacgagtaaggagttctcgtgttttgaaccttgttcgtgacttcatcatttcaaaagccgagagtttcattagtgttttggatcaaacagactatggtactagtggtatttcaggtgagaaaatacgccgcctttctattcataatgccgatgtcaaattgctagagtcgggatatgacttgagtcataatcgtaccctattactattccagcaacaaagttctcattctgtgcttgaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

285

Amino Acids

32.49

Weight (kDa)

7.07

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16711 FvH4_3g16712 FvH4_3g16720
malus_domestica	MD05G1207400.v1.1 MD05G1207700.v1.1 MD05G1207800.v1.1
prunus_persica	Prupe.4G149700_v2.0.a1 Prupe.4G149800_v2.0.a1 Prupe.4G149900_v2.0.a1
pyrus_communis	pycom05g19370
rosa_chinensis	RchiOBHm_Chr0c21g0500341 RchiOBHm_Chr0c21g0500371 RchiOBHm_Chr2g0091131 RchiOBHm_Chr2g0127031 RchiOBHm_Chr2g0127041 RchiOBHm_Chr2g0127051 RchiOBHm_Chr2g0127891 RchiOBHm_Chr2g0167971 RchiOBHm_Chr2g0168051 RchiOBHm_Chr2g0168061 RchiOBHm_Chr2g0168221 RchiOBHm_Chr4g0399061 RchiOBHm_Chr5g0027671 RchiOBHm_Chr5g0027831
rosa_laevigata	RLG00000016184 RLG00000033046 RLG00000033047 RLG00000033049
rosa_multiflora	Rmu_co8364439.1_g000001 Rmu_sc0000920.1_g000014 Rmu_sc0001647.1_g000020 Rmu_sc0003033.1_g000048 Rmu_sc0004851.1_g000010 Rmu_sc0006599.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051770 Rroxscaffold_1G00051790 Rroxscaffold_1G00051800
rosa_rugosa	Rorug02G0013500 Rorug02G0013700 Rorug05G0101600 Rorug05G0101800 Rorug05G0101900 Rorug05G0101900 Rorug05G0102100
rosa_samantha	Rh2BG058100 Rh2BG331500 Rh2BG613000 Rh2BG613300 Rh2BG614100 Rh2CG059900 Rh4AG091700 Rh4CG100000 Rh5AG195900 Rh5AG196300 Rh5AG196400 Rh5BG194100 Rh5CG205000 Rh5CG213200 Rh5CG214300 Rh5DG195100 Rh5DG195800 Rh5DG196100 Rh7AG354400
rosa_wichuraiana	Rw5G017760 Rw5G017850 Rw5G017880 Rw7G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	3 cut(s)	346, 411, 702
AcsI	RAATTY	3 cut(s)	254, 319, 580
AcuI	CTGAAG	4 cut(s)	27, 424, 474, 522
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	3 cut(s)	437, 712, 808
AfiI	CCNNNNNNNGG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	74, 104, 640, 666, 851
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	1 cut(s)	599
AleI	CACNNNNGTG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	296, 500, 568
AluI	AGCT	3 cut(s)	296, 500, 568
Alw21I	GWGCWC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	346, 411, 702
Ama87I	CYCGRG	2 cut(s)	185, 200
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	254, 319, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	58, 740
AvaI	CYCGRG	2 cut(s)	185, 200
BaeGI	GKGCMC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	570
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	2 cut(s)	462, 521
Bbv12I	GWGCWC	1 cut(s)	570
BccI	CCATC	3 cut(s)	124, 423, 605
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	601
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	84, 143, 275, 714, 776
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	600
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	1 cut(s)	601
BmeT110I	CYCGRG	2 cut(s)	185, 200
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	63, 268
BoxI	GACNNNNGTC	1 cut(s)	795
BpiI	GAAGAC	2 cut(s)	462, 521
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	142, 814
Bsa29I	ATCGAT	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	334, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse1I	ACTGG	2 cut(s)	33, 305
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	601
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	334, 600
BseGI	GGATG	2 cut(s)	100, 135
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	33, 305
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	2 cut(s)	185, 200
BslI	CCNNNNNNNGG	1 cut(s)	600
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	2 cut(s)	185, 200
Bsp1286I	GDGCHC	2 cut(s)	184, 570
Bsp143I	GATC	3 cut(s)	338, 403, 694
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	609
BspPI	GGATC	3 cut(s)	346, 411, 702
BsrI	ACTGG	2 cut(s)	33, 305
BssECI	CCNNGG	2 cut(s)	334, 600
BssMI	GATC	3 cut(s)	338, 403, 694
BssNI	GRCGYC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	601
BstACI	GRCGYC	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	100, 135
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	3 cut(s)	341, 406, 697
BstMBI	GATC	3 cut(s)	338, 403, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 278, 478
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	462, 521
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	403
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	100, 135
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	599
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	436, 711, 807
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	3 cut(s)	436, 711, 807
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	340, 405, 696
DpnII	GATC	3 cut(s)	338, 403, 694
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	570
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	4 cut(s)	27, 424, 474, 522
Eco88I	CYCGRG	2 cut(s)	185, 200
EcoICRI	GAGCTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	172
FaiI	YATR	8 cut(s)	170, 288, 327, 591, 708, 756, 789, 801
FatI	CATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	2 cut(s)	107, 142
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	5 cut(s)	84, 143, 275, 714, 776
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	742
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	32
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	7 cut(s)	87, 149, 198, 218, 356, 779, 796
HphI	GGTGA	2 cut(s)	58, 740
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	6 cut(s)	157, 165, 197, 343, 420, 561
Hpy188III	TCNNGA	4 cut(s)	202, 452, 650, 783
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	497, 545
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	286, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 278, 478
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	338, 403, 694
LmnI	GCTCC	1 cut(s)	301
LweI	GCATC	2 cut(s)	63, 268
MaeI	CTAG	5 cut(s)	84, 143, 275, 714, 776
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	3 cut(s)	10, 395, 650
MalI	GATC	3 cut(s)	340, 405, 696
MboI	GATC	3 cut(s)	338, 403, 694
MboII	GAAGA	5 cut(s)	328, 398, 467, 526, 588
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	184, 570
MluCI	AATT	8 cut(s)	36, 115, 254, 319, 345, 483, 580, 770
MlyI	GAGTC	7 cut(s)	96, 143, 192, 227, 350, 788, 805
MmeI	TCCRAC	4 cut(s)	242, 323, 434, 553
MnlI	CCTC	5 cut(s)	117, 120, 171, 394, 518
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	35, 234
MslI	CAYNNNNRTG	2 cut(s)	173, 187
MspR9I	CCNGG	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	601
MwoI	GCNNNNNNNGC	3 cut(s)	143, 278, 478
NdeII	GATC	3 cut(s)	338, 403, 694
NlaIII	CATG	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	187
PaeR7I	CTCGAG	2 cut(s)	185, 200
PciI	ACATGT	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	7 cut(s)	95, 143, 192, 226, 350, 787, 804
PpsI	GAGTC	7 cut(s)	95, 143, 192, 226, 350, 787, 804
PscI	ACATGT	1 cut(s)	168
PshAI	GACNNNNGTC	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	599
PspXI	VCTCGAGB	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	3 cut(s)	437, 712, 808
RsaNI	GTAC	3 cut(s)	436, 711, 807
RseI	CAYNNNNRTG	2 cut(s)	173, 187
SacI	GAGCTC	1 cut(s)	570
SalI	GTCGAC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	35, 234
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	3 cut(s)	338, 403, 694
SchI	GAGTC	7 cut(s)	96, 143, 192, 227, 350, 788, 805
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	184, 570
SfaNI	GCATC	2 cut(s)	63, 268
SfcI	CTRYAG	1 cut(s)	21
Sfr274I	CTCGAG	2 cut(s)	185, 200
SlaI	CTCGAG	2 cut(s)	185, 200
SmiMI	CAYNNNNRTG	2 cut(s)	173, 187
SmlI	CTYRAG	4 cut(s)	121, 185, 200, 793
SmoI	CTYRAG	4 cut(s)	121, 185, 200, 793
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	8 cut(s)	36, 115, 254, 319, 345, 483, 580, 770
SsiI	CCGC	1 cut(s)	742
SspMI	CTAG	5 cut(s)	84, 143, 275, 714, 776
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	6 cut(s)	173, 186, 201, 224, 246, 609
TasI	AATT	8 cut(s)	36, 115, 254, 319, 345, 483, 580, 770
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	744
Tru1I	TTAA	2 cut(s)	35, 234
Tru9I	TTAA	2 cut(s)	35, 234
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	646, 670, 743
TspRI	CASTG	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	3 cut(s)	254, 319, 580
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XhoI	CTCGAG	2 cut(s)	185, 200
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	5 cut(s)	84, 143, 275, 714, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.