RchiOBHm_Chr2g0127031

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
41770839 .. 41771228
390 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49893

Sequence Viewer

Length: 390 bp
ATGGAGCTCACTTTGGTTCAGTTTTACACAGGGAAGAAGTTGGTATTCAAAGCTCAAACGTTCAAGAAACTAATGATATTAAGAATAGAAGAATTCGATGAGCTAAATTTGATGAAAGTTGAGAGTCAGGCAATGCCTATGCTTAAGAAGCTAATCATATCTAGATGTCAGGGTTTGGACTCACTTCCATGGGGCATTACTGGTCTTATCCAGCTTGAAGAATTGATTGAATCTGATATGCCTGATAAATTCATCGCTAATCTTCAAAAGCATAGTGCAGCCCTTGAGATGATGCAGATTCGAGTCATCCATTCTTCCAAAACAGGGAGCAACCAATCTTCGACTAGATTTCAAGATTTCTCTCCCTCCAATTGGCATTTGGAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.88

Weight (kDa)

6.83

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 59
AcsI RAATTY 3 cut(s) 92, 106, 248
AfiI CCNNNNNNNGG 2 cut(s) 324, 372
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 6 cut(s) 49, 64, 218, 230, 266, 353
AluBI AGCT 5 cut(s) 7, 53, 103, 151, 214
AluI AGCT 5 cut(s) 7, 53, 103, 151, 214
Alw21I GWGCWC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 3 cut(s) 92, 106, 248
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 290
BfaI CTAG 2 cut(s) 162, 345
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmsI GCATC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 372
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 324, 372
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 324, 372
Bsp1286I GDGCHC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 306
CviAII CATG 1 cut(s) 189
CviJI RGCY 6 cut(s) 7, 53, 103, 151, 214, 281
CviKI_1 RGCY 6 cut(s) 7, 53, 103, 151, 214, 281
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 140, 158, 190, 239, 273
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 293
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 162, 345
GluI GCNGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 192
HinfI GANTC 6 cut(s) 124, 179, 230, 298, 303, 383
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 64, 162, 353
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 278, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 1 cut(s) 192
LmnI GCTCC 2 cut(s) 4, 327
LpnPI CCDG 7 cut(s) 15, 113, 155, 186, 224, 255, 309
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 162, 345
MaeII ACGT 1 cut(s) 59
MboII GAAGA 6 cut(s) 46, 101, 230, 254, 306, 330
MfeI CAATTG 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 5 cut(s) 92, 106, 221, 248, 370
MlyI GAGTC 3 cut(s) 133, 173, 312
MnlI CCTC 1 cut(s) 376
MseI TTAA 2 cut(s) 80, 144
MslI CAYNNNNRTG 1 cut(s) 187
MspCI CTTAAG 1 cut(s) 143
MunI CAATTG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 148
NcoI CCATGG 1 cut(s) 188
NlaIII CATG 1 cut(s) 192
PfeI GAWTC 3 cut(s) 230, 298, 383
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 132, 173, 311
PpsI GAGTC 3 cut(s) 132, 173, 311
Psp124BI GAGCTC 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 80, 144
SatI GCNGC 1 cut(s) 279
SchI GAGTC 3 cut(s) 133, 173, 312
SduI GDGCHC 1 cut(s) 9
SetI ASST 6 cut(s) 9, 55, 62, 105, 153, 216
SfaNI GCATC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 143, 284
SmoI CTYRAG 2 cut(s) 143, 284
Sse9I AATT 5 cut(s) 92, 106, 221, 248, 370
SspMI CTAG 2 cut(s) 162, 345
SstI GAGCTC 1 cut(s) 9
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 96, 301, 341
TasI AATT 5 cut(s) 92, 106, 221, 248, 370
TfiI GAWTC 3 cut(s) 230, 298, 383
Tru1I TTAA 2 cut(s) 80, 144
Tru9I TTAA 2 cut(s) 80, 144
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 128, 241
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 3 cut(s) 92, 106, 248
XbaI TCTAGA 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 162, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.