Rorug05G0102100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
8979210 .. 8979567
358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0102100.1

Sequence Viewer

Length: 264 bp
ATGGAGGGTTGCAGAATGGCTATGGTTTTCACCATCTACATCATTGCCCTTGTGAGCTTTGCTTCTTTCAAAGCCACAGTTGCTGCTGAAGATTTTGCACCTGCACCAGCTCCAATGGAAAGCAAAGCAGCTGCTCTGGGTGTTCCAGCTGCTCTAGGGGCCATCGCTTCTTTGCTGGCTTGTATTGCATCATACATATCTCCACTTTTTGCCAAGTATTTCATGATTGAAGCTAATTCTTACATTACTAAGTCTTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.1

Weight (kDa)

7.74

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 70, 230, 258
AluBI AGCT 5 cut(s) 57, 110, 131, 149, 233
AluI AGCT 5 cut(s) 57, 110, 131, 149, 233
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 4 cut(s) 83, 128, 131, 149
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 70, 118, 136, 140
BccI CCATC 2 cut(s) 41, 170
BfaI CTAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 84, 129, 132, 150
BlsI GCNGC 4 cut(s) 85, 130, 133, 151
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 4 cut(s) 70, 118, 136, 140
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 161
BsnI GGCC 1 cut(s) 161
BspANI GGCC 1 cut(s) 161
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 80, 158, 185
BstV1I GCAGC 4 cut(s) 70, 118, 136, 140
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 148
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 159
CviAII CATG 1 cut(s) 223
CviJI RGCY 9 cut(s) 20, 57, 74, 110, 131, 149, 161, 179, 233
CviKI_1 RGCY 9 cut(s) 20, 57, 74, 110, 131, 149, 161, 179, 233
DdeI CTNAG 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 108
FaeI CATG 1 cut(s) 226
FaiI YATR 4 cut(s) 23, 193, 197, 224
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 84, 129, 132, 150
Fsp4HI GCNGC 4 cut(s) 84, 129, 132, 150
FspBI CTAG 1 cut(s) 155
GluI GCNGC 4 cut(s) 84, 129, 132, 150
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 1 cut(s) 226
HphI GGTGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 12, 98, 104, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 158, 185
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 114, 120, 122, 159, 161
Lsp1109I GCAGC 4 cut(s) 70, 118, 136, 140
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 155
MboII GAAGA 2 cut(s) 101, 246
MluCI AATT 1 cut(s) 235
MspA1I CMGCKG 2 cut(s) 131, 149
MwoI GCNNNNNNNGC 3 cut(s) 80, 158, 185
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 160
PagI TCATGA 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 85, 130, 133, 151
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 2 cut(s) 131, 149
SatI GCNGC 4 cut(s) 84, 129, 132, 150
Sau96I GGNCC 1 cut(s) 159
SetI ASST 6 cut(s) 59, 103, 112, 133, 151, 235
SfaNI GCATC 1 cut(s) 197
Sse9I AATT 1 cut(s) 235
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 79
TasI AATT 1 cut(s) 235
TseI GCWGC 4 cut(s) 83, 128, 131, 149
TspDTI ATGAA 1 cut(s) 211
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.