Rh5DG196100

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000865
Physical Location & Seq
Forward (+)
21755265 .. 21756273
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG196100.1

Sequence Viewer

Length: 396 bp
ATGCAGCTCGAGTTGGTTGACTATGACCGAGGGAAAGTGCTAGAATTCAGTACCAATACGTTCAAGAAACTAAAGATATTACATATTGAACAATTTGAAGGGCTAAATATGATGGTAGTCGAGAGTGGAGCAATGCCTATACTTGAGAAGCTAACCATGTGTAAATGTCGGAATTTGAAGTCACTTCCAGCATTTGGCCCTGATGATCTGAAATCAGTGGAGGAACTGCTTCTGTATGACATGCACAAGGAATTCATTGCTAGGCTTCAGAATTATTCTAAAGACCGTCTGGGGCATCAGCATGTTAGAGTCATACATTCTTTCAGTCTCGGCAGCAATCATTCGTTCACTGATTTCAAGAATCTTTCTCCATCACAGTGGCTTGTGGAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

131

Amino Acids

15.25

Weight (kDa)

6.65

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AcsI RAATTY 3 cut(s) 44, 172, 251
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 5 cut(s) 64, 89, 98, 178, 358
AluBI AGCT 2 cut(s) 7, 151
AluI AGCT 2 cut(s) 7, 151
Alw26I GTCTC 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 4, 333
ApoI RAATTY 3 cut(s) 44, 172, 251
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 8
BbvI GCAGC 2 cut(s) 16, 345
BccI CCATC 2 cut(s) 106, 379
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 41, 261
BisI GCNGC 2 cut(s) 5, 334
BlsI GCNGC 2 cut(s) 6, 335
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 138, 255
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 2 cut(s) 138, 255
BseXI GCAGC 2 cut(s) 16, 345
BshFI GGCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 1 cut(s) 205
BspANI GGCC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 138, 255
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 287, 378
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 205
BstNSI RCATGY 2 cut(s) 244, 305
BstV1I GCAGC 2 cut(s) 16, 345
BstXI CCANNNNNNTGG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 222, 348, 383
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 51
CviAII CATG 3 cut(s) 157, 241, 302
CviJI RGCY 6 cut(s) 7, 103, 151, 198, 265, 382
CviKI_1 RGCY 6 cut(s) 7, 103, 151, 198, 265, 382
CviQI GTAC 1 cut(s) 51
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 8
EcoRI GAATTC 2 cut(s) 44, 251
FaeI CATG 3 cut(s) 160, 244, 305
FaiI YATR 9 cut(s) 24, 84, 110, 140, 158, 237, 242, 303, 314
FatI CATG 3 cut(s) 156, 240, 301
Fnu4HI GCNGC 2 cut(s) 5, 334
Fsp4HI GCNGC 2 cut(s) 5, 334
FspBI CTAG 2 cut(s) 41, 261
GluI GCNGC 2 cut(s) 5, 334
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 3 cut(s) 160, 244, 305
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 309, 361
Hpy166II GTNNAC 2 cut(s) 19, 348
Hpy188I TCNGA 3 cut(s) 171, 210, 270
Hpy188III TCNNGA 3 cut(s) 64, 121, 358
Hpy8I GTNNAC 2 cut(s) 19, 348
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 287, 378
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 4, 244
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 3 cut(s) 160, 244, 305
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 3 cut(s) 201, 213, 275
Lsp1109I GCAGC 2 cut(s) 16, 345
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 41, 261
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MluCI AATT 5 cut(s) 44, 92, 172, 251, 271
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 23, 214
MroXI GAANNNNTTC 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 300, 376
NdeII GATC 1 cut(s) 205
NlaIII CATG 3 cut(s) 160, 244, 305
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 180
NspI RCATGY 2 cut(s) 244, 305
PaeR7I CTCGAG 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 2 cut(s) 6, 335
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 8
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 2 cut(s) 300, 376
SatI GCNGC 2 cut(s) 5, 334
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 318
SetI ASST 3 cut(s) 9, 62, 153
SfaNI GCATC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 300, 376
SmlI CTYRAG 2 cut(s) 8, 143
SmoI CTYRAG 2 cut(s) 8, 143
Sse9I AATT 5 cut(s) 44, 92, 172, 251, 271
SspMI CTAG 2 cut(s) 41, 261
TaaI ACNGT 2 cut(s) 287, 378
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 9, 120
TaqII GACCGA 1 cut(s) 42
TasI AATT 5 cut(s) 44, 92, 172, 251, 271
TfiI GAWTC 1 cut(s) 361
TscAI CASTG 3 cut(s) 222, 355, 383
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 2 cut(s) 4, 333
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 3 cut(s) 222, 355, 383
Van91I CCANNNNNTGG 1 cut(s) 194
XapI RAATTY 3 cut(s) 44, 172, 251
XceI RCATGY 2 cut(s) 244, 305
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 41, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.