FvH4_3g16712

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000865
Physical Location & Seq
Forward (+)
10536610 .. 10537283
674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16712.t1

Sequence Viewer

Length: 603 bp
ATGCGTCATCTTTTACTTTATAGCTGTGATGTTACTTCTGGTGTGCACAAGGAGTTGAGAAAAGTAGTCCTTAAAGCCTTGGGAGAGTTAATTTCTCTCCGGAAGTTGGGGTTGGTAGACCTTGAGAAAGAACATGGAAGTGAATTATGTTGTTCCATACAAAAAATGGCAGAGCTTTCAACACTTGATATACGATCAACAGGTGAGGACGAGTATCTTGATTTGGATCATATGAACTCCCCAGCTGGGCCTCCTCGCTATCTCCAACATCTCTCTTTGACAGGACACCTGGAGAAACTGCCGCAATGGATTTCCCAGCTTCATAGTCTAGCTAGGATTACTCTAAATGGATCCAAATTGGATGCTGACTCCAGCTCACTTGAGATCCTCCAAGATTTGCCTAATCTTGTGGAGCTTGAGTTGGTTGACTTTTATACTGGGCATTTGTTGAAGTTCAGAGCTAAAAAGTTCAAGAAACTAAAGGCATTACGTATTGAGAAATTTGATGAGCTAGATTTGATGATAATCGAGGATGGAGCCATGCCTGAGCTTAAGAGACTAACGTTGTCGAAATGTAAAGTTGTTCTTATTTGGCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

201

Amino Acids

22.79

Weight (kDa)

6.5

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 20 - 190 7.9e-20 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 1 cut(s) 302
AclI AACGTT 1 cut(s) 563
AclWI GGATC 4 cut(s) 234, 345, 358, 379
AcsI RAATTY 1 cut(s) 500
AfiI CCNNNNNNNGG 2 cut(s) 106, 246
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 3 cut(s) 180, 451, 472
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 550
Alw44I GTGCAC 1 cut(s) 44
AlwI GGATC 4 cut(s) 234, 345, 358, 379
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 48
BamHI GGATCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 3 cut(s) 329, 333, 512
BfrI CTTAAG 1 cut(s) 551
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 352, 538
BmrFI CCNGG 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 447
BpmI CTGGAG 2 cut(s) 311, 355
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 3 cut(s) 143, 401, 437
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 2 cut(s) 225, 524
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 246
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 2 cut(s) 225, 524
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 367, 538
BseJI GATNNNNATC 2 cut(s) 225, 524
BseLI CCNNNNNNNGG 2 cut(s) 106, 246
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 48
BseYI CCCAGC 3 cut(s) 241, 245, 315
BshFI GGCC 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 106, 246
BsmAI GTCTC 1 cut(s) 550
BsnI GGCC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 4 cut(s) 194, 226, 350, 384
BspACI CCGC 1 cut(s) 302
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 538
BspEI TCCGGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 352, 538
BspPI GGATC 4 cut(s) 234, 345, 358, 379
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 4 cut(s) 194, 226, 350, 384
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 290
BstAFI CTTAAG 1 cut(s) 551
BstBAI YACGTR 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 367, 538
BstKTI GATC 4 cut(s) 197, 229, 353, 387
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 4 cut(s) 194, 226, 350, 384
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 48
BstSNI TACGTA 1 cut(s) 491
BstX2I RGATCY 2 cut(s) 350, 384
BstYI RGATCY 2 cut(s) 350, 384
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 367, 538
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 2 cut(s) 134, 541
DdeI CTNAG 1 cut(s) 546
DpnI GATC 4 cut(s) 196, 228, 352, 386
DpnII GATC 4 cut(s) 194, 226, 350, 384
Eco105I TACGTA 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 137, 544
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 570, 602
FatI CATG 2 cut(s) 133, 540
FauNDI CATATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 374, 545
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 3 cut(s) 329, 333, 512
GluI GCNGC 1 cut(s) 302
GsaI CCCAGC 3 cut(s) 245, 249, 319
GsuI CTGGAG 2 cut(s) 311, 355
HaeIII GGCC 1 cut(s) 250
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 137, 544
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 46, 118, 427
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 3 cut(s) 100, 218, 472
Hpy8I GTNNAC 3 cut(s) 46, 118, 427
HpyCH4IV ACGT 2 cut(s) 490, 563
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 2 cut(s) 490, 563
Hsp92II CATG 2 cut(s) 137, 544
Kpn2I TCCGGA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 194, 226, 350, 384
LmnI GCTCC 2 cut(s) 412, 536
LweI GCATC 1 cut(s) 352
MaeI CTAG 3 cut(s) 329, 333, 512
MaeII ACGT 2 cut(s) 490, 563
MaeIII GTNAC 1 cut(s) 31
MalI GATC 4 cut(s) 196, 228, 352, 386
MboI GATC 4 cut(s) 194, 226, 350, 384
MflI RGATCY 2 cut(s) 350, 384
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 4 cut(s) 90, 143, 356, 500
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 5 cut(s) 199, 261, 264, 398, 523
MroI TCCGGA 1 cut(s) 99
MseI TTAA 3 cut(s) 72, 89, 552
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 245
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 231
NdeII GATC 4 cut(s) 194, 226, 350, 384
NlaIII CATG 2 cut(s) 137, 544
NlaIV GGNNCC 2 cut(s) 352, 538
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 3 cut(s) 241, 245, 315
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 352, 538
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 350, 384
PvuII CAGCTG 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 3 cut(s) 72, 89, 552
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 4 cut(s) 194, 226, 350, 384
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 4 cut(s) 122, 380, 416, 551
SmoI CTYRAG 4 cut(s) 122, 380, 416, 551
SnaBI TACGTA 1 cut(s) 491
Sse9I AATT 4 cut(s) 90, 143, 356, 500
SsiI CCGC 1 cut(s) 302
SspMI CTAG 3 cut(s) 329, 333, 512
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 78
TaiI ACGT 2 cut(s) 493, 566
TaqI TCGA 2 cut(s) 528, 569
TasI AATT 4 cut(s) 90, 143, 356, 500
TauI GCSGC 1 cut(s) 304
Tru1I TTAA 3 cut(s) 72, 89, 552
Tru9I TTAA 3 cut(s) 72, 89, 552
TspDTI ATGAA 2 cut(s) 248, 311
Vha464I CTTAAG 1 cut(s) 551
VneI GTGCAC 1 cut(s) 44
XapI RAATTY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 3 cut(s) 329, 333, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.