Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8364439.1

Orthogroup ID

OG0000865

Physical Location & Seq

Genomic Coordinates Forward (+)

139 .. 935

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8364439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgctttctgcagcgaatattggagctttatcatctatacaaaatttgtcactaatgaaggtgaaaaacaacaaaaaactcattaaagccttgggaaggctaactgatcttagaaagctggggctgacagacggaagagatctgtgtttagccattcaaaagatggagcatctttcaacacttgatgcaagatcaacaagtgtggacgagtatcttgagttggatcatatgcaatctggatcccctccaccactctatctagggagattatatttgaaagggcgtctagagaaaggttaccacggtggattcctaagcttaatactcgacttggttgactatgaccgagggaaagtgctagaattcagtaccaatacgttcaagaaactaaagatattacatattgaacaatttgaagggctaaatatgatggtagtcgagagtggagcaatgcctatgcttgagaagctaaccatgtgtaaatgtcggaatttgaagtcacttccagcatttggccctgatgatctgaaatcagtggaggaactgcttctgtatgacatgcaaaaggaattcattgctaagcttcagaattattctaaagaccgtctggggcatcagcatgttagagtcatacattctttcagtctcggcagcaatcattctttcactgatttcaagaatctttctccatcacagtggcttgtggaacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

237

Amino Acids

26.87

Weight (kDa)

8.84

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16711 FvH4_3g16712 FvH4_3g16720
malus_domestica	MD05G1207400.v1.1 MD05G1207700.v1.1 MD05G1207800.v1.1
prunus_persica	Prupe.4G149700_v2.0.a1 Prupe.4G149800_v2.0.a1 Prupe.4G149900_v2.0.a1
pyrus_communis	pycom05g19370
rosa_chinensis	RchiOBHm_Chr0c21g0500341 RchiOBHm_Chr0c21g0500371 RchiOBHm_Chr2g0091131 RchiOBHm_Chr2g0127031 RchiOBHm_Chr2g0127041 RchiOBHm_Chr2g0127051 RchiOBHm_Chr2g0127891 RchiOBHm_Chr2g0167971 RchiOBHm_Chr2g0168051 RchiOBHm_Chr2g0168061 RchiOBHm_Chr2g0168221 RchiOBHm_Chr4g0399061 RchiOBHm_Chr5g0027671 RchiOBHm_Chr5g0027831
rosa_laevigata	RLG00000016184 RLG00000033046 RLG00000033047 RLG00000033049
rosa_multiflora	Rmu_co8364439.1_g000001 Rmu_sc0000920.1_g000014 Rmu_sc0001647.1_g000020 Rmu_sc0003033.1_g000048 Rmu_sc0004851.1_g000010 Rmu_sc0006599.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051770 Rroxscaffold_1G00051790 Rroxscaffold_1G00051800
rosa_rugosa	Rorug02G0013500 Rorug02G0013700 Rorug05G0101600 Rorug05G0101800 Rorug05G0101900 Rorug05G0101900 Rorug05G0102100
rosa_samantha	Rh2BG058100 Rh2BG331500 Rh2BG613000 Rh2BG613300 Rh2BG614100 Rh2CG059900 Rh4AG091700 Rh4CG100000 Rh5AG195900 Rh5AG196300 Rh5AG196400 Rh5BG194100 Rh5CG205000 Rh5CG213200 Rh5CG214300 Rh5DG195100 Rh5DG195800 Rh5DG196100 Rh7AG354400
rosa_wichuraiana	Rw5G017760 Rw5G017850 Rw5G017880 Rw7G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AclWI	GGATC	3 cut(s)	231, 234, 247
AcsI	RAATTY	4 cut(s)	43, 362, 490, 569
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	96, 512
AgsI	TTSAA	8 cut(s)	158, 177, 277, 382, 407, 416, 496, 676
AluBI	AGCT	5 cut(s)	26, 118, 318, 469, 583
AluI	AGCT	5 cut(s)	26, 118, 318, 469, 583
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	3 cut(s)	231, 234, 247
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	2 cut(s)	11, 651
ApoI	RAATTY	4 cut(s)	43, 362, 490, 569
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	23, 663
BccI	CCATC	3 cut(s)	157, 424, 697
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	260, 287, 359
BfmI	CTRYAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	2 cut(s)	12, 652
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	2 cut(s)	13, 653
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	3 cut(s)	175, 178, 622
Bpu10I	CCTNAGC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	236, 482
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	90, 301, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 512
Bse3DI	GCAATG	2 cut(s)	456, 573
BseDI	CCNNGG	3 cut(s)	90, 301, 346
BseLI	CCNNNNNNNGG	2 cut(s)	96, 512
BseMI	GCAATG	2 cut(s)	456, 573
BseXI	GCAGC	2 cut(s)	23, 663
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	96, 512
BsmAI	GTCTC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	516
Bsp143I	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
Bsp1720I	GCTNAGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	3 cut(s)	231, 234, 247
BsrDI	GCAATG	2 cut(s)	456, 573
BssECI	CCNNGG	3 cut(s)	90, 301, 346
BssMI	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	305, 605, 696
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	283
BstDEI	CTNAG	3 cut(s)	110, 314, 579
BstDSI	CCRYGG	1 cut(s)	301
BstEII	GGTNACC	1 cut(s)	296
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstKTI	GATC	6 cut(s)	109, 142, 194, 226, 242, 526
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	562, 623
BstPI	GGTNACC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 663
BstX2I	RGATCY	2 cut(s)	139, 239
BstXI	CCANNNNNNTGG	1 cut(s)	696
BstYI	RGATCY	2 cut(s)	139, 239
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	540, 666, 701
Cfr13I	GGNCC	1 cut(s)	515
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	3 cut(s)	475, 559, 620
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	110, 314, 579
DpnI	GATC	6 cut(s)	108, 141, 193, 225, 241, 525
DpnII	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	569
Eco91I	GGTNACC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	296
EcoRI	GAATTC	2 cut(s)	362, 569
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	478, 562, 623
FatI	CATG	3 cut(s)	474, 558, 619
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	12, 652
Fsp4HI	GCNGC	2 cut(s)	12, 652
FspBI	CTAG	3 cut(s)	260, 287, 359
GluI	GCNGC	2 cut(s)	12, 652
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	516
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	478, 562, 623
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	316, 581
HinfI	GANTC	3 cut(s)	309, 627, 679
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	205, 337
Hpy188I	TCNGA	3 cut(s)	489, 528, 588
Hpy188III	TCNNGA	6 cut(s)	215, 237, 287, 382, 439, 676
Hpy8I	GTNNAC	2 cut(s)	205, 337
HpyAV	CCTTC	3 cut(s)	52, 90, 410
HpyCH4III	ACNGT	3 cut(s)	305, 605, 696
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	4 cut(s)	11, 188, 232, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	3 cut(s)	110, 314, 579
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	478, 562, 623
Kzo9I	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
LmnI	GCTCC	3 cut(s)	23, 166, 446
LpnPI	CCDG	5 cut(s)	104, 222, 519, 531, 593
Lsp1109I	GCAGC	2 cut(s)	23, 663
LweI	GCATC	3 cut(s)	175, 178, 622
MaeI	CTAG	3 cut(s)	260, 287, 359
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	48, 296, 498
MalI	GATC	6 cut(s)	108, 141, 193, 225, 241, 525
MboI	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
MboII	GAAGA	1 cut(s)	147
MflI	RGATCY	2 cut(s)	139, 239
MluCI	AATT	6 cut(s)	43, 362, 410, 490, 569, 589
MlyI	GAGTC	1 cut(s)	636
MmeI	TCCRAC	2 cut(s)	201, 467
MnlI	CCTC	3 cut(s)	255, 341, 532
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	2 cut(s)	84, 320
MslI	CAYNNNNRTG	2 cut(s)	618, 694
MwoI	GCNNNNNNNGC	1 cut(s)	466
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
NlaIII	CATG	3 cut(s)	478, 562, 623
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	627
NmuCI	GTSAC	2 cut(s)	48, 498
NspI	RCATGY	2 cut(s)	562, 623
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	309, 679
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	13, 653
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	139, 239
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	618, 694
SaqAI	TTAA	2 cut(s)	84, 320
SatI	GCNGC	2 cut(s)	12, 652
Sau3AI	GATC	6 cut(s)	106, 139, 191, 223, 239, 523
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	636
SetI	ASST	8 cut(s)	28, 63, 120, 298, 320, 380, 471, 585
SfaNI	GCATC	3 cut(s)	175, 178, 622
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	618, 694
SmlI	CTYRAG	2 cut(s)	215, 461
SmoI	CTYRAG	2 cut(s)	215, 461
Sse9I	AATT	6 cut(s)	43, 362, 410, 490, 569, 589
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	260, 287, 359
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	305, 605, 696
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	327, 438
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	6 cut(s)	43, 362, 410, 490, 569, 589
TfiI	GAWTC	2 cut(s)	309, 679
Tru1I	TTAA	2 cut(s)	84, 320
Tru9I	TTAA	2 cut(s)	84, 320
TscAI	CASTG	3 cut(s)	540, 673, 701
TseFI	GTSAC	2 cut(s)	48, 498
TseI	GCWGC	2 cut(s)	11, 651
Tsp45I	GTSAC	2 cut(s)	48, 498
TspDTI	ATGAA	2 cut(s)	71, 562
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	540, 673, 701
Van91I	CCANNNNNTGG	1 cut(s)	512
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	4 cut(s)	43, 362, 490, 569
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	2 cut(s)	562, 623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	3 cut(s)	260, 287, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.