RLG00000033049

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000865
Physical Location & Seq
Forward (+)
22613994 .. 22615096
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033049

Sequence Viewer

Length: 825 bp
ATGGAGCATCTTTCAACACTTGATGTAAGATCAACAAGTGTGGACGAGTATCTTGAGTTGGATCATATGCAACCTGAATCCCCTCCACCACTCTATTTAGAGAGATTATATTTGAAAGGGAGTCTAGAAAGGTTACCACGGTGGATTCCTAAGCTTAATAGTCTAGCAAAGATTGGTTTGAAGTGGTCAAAGCTGGATGCTAAGATTGCTAACCCACTTGACGCCCTTCAAGGTTTGCCTAATCTAATGCAGCTCGAGTTGGTTGACTATTACCGAGGGAAAGTGCTAGAATTCAGTACCAATACGTTCAAGAAACTAAAGATATTACATATTGAACAATTTGATGGGCTAAATATGATGGTAGTCGAGAGTGGAGCAATGCCTATGCTTGAGAAGCTAACCATGTGTAAATGTCGGAATTTGAAGTTACTTCCAGCATTTGGCCCTGATGATCTGAAATCACTGGAGGAACTGCTTCTGTATGACATGCACAAGGAATTCATTGCTAAGCTTCAGAATGATTCCGTAGACCGTCGGGGTGGCTTGTGGAACACTAAATTGTTGTGGACTCTAGAAAGAAGCACAAGGCAGCTTGGCAGCTTTGGACTTCGGAGGGAGTACTTCAATGAAGTTAAAGACCCGAGCAGGATCCCACCCTTGTTTTCTTTTCGTGTGGTGCCACTTTTGTTAGTTGCTGTTGCTGTGGCTGTTGTTGTTGTTGTTGTTATTGCTTCTCGTTGCTTCCCTCTGAGCAGAAGCCATTCTTTCTTCATCAATAAAATGAACTCTTTCAGGCTTTATTCAGGGGAGTGTCAGGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

275

Amino Acids

31.58

Weight (kDa)

8.78

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 158 1.5e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 676
AccB7I CCANNNNNTGG 1 cut(s) 440
AccI GTMKAC 1 cut(s) 528
AclWI GGATC 3 cut(s) 69, 643, 656
AcsI RAATTY 3 cut(s) 290, 418, 497
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 298, 620
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 8 cut(s) 15, 115, 181, 230, 310, 335, 424, 625
AluBI AGCT 7 cut(s) 154, 193, 253, 397, 511, 592, 600
AluI AGCT 7 cut(s) 154, 193, 253, 397, 511, 592, 600
AlwI GGATC 3 cut(s) 69, 643, 656
Ama87I CYCGRG 2 cut(s) 254, 640
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 250, 589, 597
ApoI RAATTY 3 cut(s) 290, 418, 497
Asp700I GAANNNNTTC 3 cut(s) 474, 760, 788
AspS9I GGNCC 1 cut(s) 443
AvaI CYCGRG 2 cut(s) 254, 640
BamHI GGATCC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 676
BbvI GCAGC 3 cut(s) 262, 601, 609
BccI CCATC 2 cut(s) 338, 352
BfaI CTAG 4 cut(s) 125, 164, 287, 572
BisI GCNGC 3 cut(s) 251, 590, 598
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 252, 591, 599
BmcAI AGTACT 1 cut(s) 620
BmeT110I CYCGRG 2 cut(s) 254, 640
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 2 cut(s) 650, 678
BmsI GCATC 2 cut(s) 16, 187
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 74, 410
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 137, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 468
Bse3DI GCAATG 2 cut(s) 384, 501
BseDI CCNNGG 2 cut(s) 137, 274
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 2 cut(s) 384, 501
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 262, 601, 609
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 676
BsiHKCI CYCGRG 2 cut(s) 254, 640
BslI CCNNNNNNNGG 1 cut(s) 440
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 2 cut(s) 254, 640
Bsp143I GATC 4 cut(s) 29, 61, 451, 648
Bsp1720I GCTNAGC 1 cut(s) 507
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 650, 678
BspPI GGATC 3 cut(s) 69, 643, 656
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 2 cut(s) 384, 501
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 2 cut(s) 137, 274
BssMI GATC 4 cut(s) 29, 61, 451, 648
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 141, 533
BstACI GRCGYC 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 150, 201, 507, 749
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 4 cut(s) 32, 64, 454, 651
BstMBI GATC 4 cut(s) 29, 61, 451, 648
BstMWI GCNNNNNNNGC 2 cut(s) 206, 394
BstNSI RCATGY 1 cut(s) 490
BstPI GGTNACC 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 262, 601, 609
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 297, 619
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 2 cut(s) 403, 487
CviQI GTAC 2 cut(s) 297, 619
DdeI CTNAG 4 cut(s) 150, 201, 507, 749
DpnI GATC 4 cut(s) 31, 63, 453, 650
DpnII GATC 4 cut(s) 29, 61, 451, 648
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 2 cut(s) 254, 640
Eco91I GGTNACC 1 cut(s) 132
EcoO65I GGTNACC 1 cut(s) 132
EcoRI GAATTC 2 cut(s) 290, 497
FaeI CATG 2 cut(s) 406, 490
FaiI YATR 9 cut(s) 66, 68, 109, 330, 356, 386, 404, 483, 488
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FatI CATG 2 cut(s) 402, 486
FauNDI CATATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 251, 590, 598
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 251, 590, 598
FspBI CTAG 4 cut(s) 125, 164, 287, 572
GluI GCNGC 3 cut(s) 251, 590, 598
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 1 cut(s) 444
HgaI GACGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 406, 490
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 152, 509
HinfI GANTC 5 cut(s) 77, 121, 145, 521, 568
Hpy166II GTNNAC 4 cut(s) 43, 265, 529, 567
Hpy188I TCNGA 5 cut(s) 417, 456, 516, 612, 750
Hpy188III TCNNGA 6 cut(s) 53, 125, 310, 367, 572, 815
Hpy8I GTNNAC 4 cut(s) 43, 265, 529, 567
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 141, 533
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 70, 250, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 394
HpyF3I CTNAG 4 cut(s) 150, 201, 507, 749
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 406, 490
Kzo9I GATC 4 cut(s) 29, 61, 451, 648
LmnI GCTCC 2 cut(s) 4, 374
LpnPI CCDG 9 cut(s) 87, 179, 447, 449, 459, 631, 778, 789, 800
Lsp1109I GCAGC 3 cut(s) 262, 601, 609
LweI GCATC 2 cut(s) 16, 187
MaeI CTAG 4 cut(s) 125, 164, 287, 572
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 132, 426
MalI GATC 4 cut(s) 31, 63, 453, 650
MboI GATC 4 cut(s) 29, 61, 451, 648
MboII GAAGA 1 cut(s) 760
MflI RGATCY 1 cut(s) 648
MluCI AATT 5 cut(s) 290, 338, 418, 497, 557
MlyI GAGTC 2 cut(s) 130, 562
MmeI TCCRAC 2 cut(s) 39, 395
MnlI CCTC 5 cut(s) 93, 269, 460, 606, 756
MroXI GAANNNNTTC 3 cut(s) 474, 760, 788
MseI TTAA 2 cut(s) 156, 633
MwoI GCNNNNNNNGC 2 cut(s) 206, 394
NdeI CATATG 1 cut(s) 66
NdeII GATC 4 cut(s) 29, 61, 451, 648
NlaIII CATG 2 cut(s) 406, 490
NlaIV GGNNCC 2 cut(s) 650, 678
NspI RCATGY 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 254
PdmI GAANNNNTTC 3 cut(s) 474, 760, 788
PfeI GAWTC 3 cut(s) 77, 145, 521
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 3 cut(s) 252, 591, 599
PleI GAGTC 2 cut(s) 129, 562
PpsI GAGTC 2 cut(s) 129, 562
PspEI GGTNACC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 650, 678
PspPI GGNCC 1 cut(s) 443
PspXI VCTCGAGB 1 cut(s) 254
PsuI RGATCY 1 cut(s) 648
RsaI GTAC 2 cut(s) 298, 620
RsaNI GTAC 2 cut(s) 297, 619
SaqAI TTAA 2 cut(s) 156, 633
SatI GCNGC 3 cut(s) 251, 590, 598
Sau3AI GATC 4 cut(s) 29, 61, 451, 648
Sau96I GGNCC 1 cut(s) 443
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 2 cut(s) 130, 562
SfaNI GCATC 2 cut(s) 16, 187
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 3 cut(s) 53, 254, 389
SmoI CTYRAG 3 cut(s) 53, 254, 389
Sse9I AATT 5 cut(s) 290, 338, 418, 497, 557
SspMI CTAG 4 cut(s) 125, 164, 287, 572
TaaI ACNGT 2 cut(s) 141, 533
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 255, 366
TasI AATT 5 cut(s) 290, 338, 418, 497, 557
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 3 cut(s) 77, 145, 521
Tru1I TTAA 2 cut(s) 156, 633
Tru9I TTAA 2 cut(s) 156, 633
TscAI CASTG 1 cut(s) 468
TseI GCWGC 3 cut(s) 250, 589, 597
TspDTI ATGAA 4 cut(s) 490, 642, 760, 797
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 1 cut(s) 468
Van91I CCANNNNNTGG 1 cut(s) 440
XapI RAATTY 3 cut(s) 290, 418, 497
XbaI TCTAGA 2 cut(s) 124, 571
XceI RCATGY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 3 cut(s) 474, 760, 788
XspI CTAG 4 cut(s) 125, 164, 287, 572
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.