FvH4_3g16720

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
10542964 .. 10551214
8251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16720.t1

Sequence Viewer

Length: 3747 bp
ATGGCTGAAGCTGTTGAAGTAGCATTCCTGCTAGTTGAGCAGGTGATAAAACTCCTCGATGAACTAGGCAAACCTCAACATAGTGTCGTGGATGATGTTAGAAAGGCAAAGACTTGGCTGGGGAGGATGGAGGCCTATCTAAAGCAGTCAGAAGCTGAGATGGATGAAAGCAACGAAGGGCTTCAAGCTCGTCTAAAACAGATCCAAGATGTAGCTTTTTCCATTGAAGATGCTCTTGACGAGTACTTGCTTCATGTCCCAAATCATTCCCACACCTATAAGATCTCTCGGTTGGCACACCGCGTTGGTCATGCAGTCCCAGATTGGAGAGCAAGCTCCAAATTGGCCTCCAGAATCGCTGGCGTTGAAAAGCAGATTGATTTTGTTCGGAAACTAGATGGAATTCATCGTCCAGAGGAAGGTAGCTCAAGCACAACATCGCAGGGAAATGGTGAATTGGCTCCCAGCCACCCTGAAGAAGATGAAACAGTTGGCTTTGAAGAGGCCGAAGAGCAACTGTCCAAACAGTTTATGGAGAGAAATTCAAGACGTTTGGCGATATCAATTGTAGGTCCTGGCGGCTCAGGCAAAACCACTCTCGTAAAGAATGTTTACAAGAGCAAGCAAGTTCGTGGGTTCTTTCACTGTCATGCTTGGATCGATGTCTCACGTCCATTTGTAGCCATCAAGCTCTTGCTAAACATCTTGAGAAAAATGGACCCAGAAAGCAACATGCAAGAACCAATTCTACAGGAAGATACAAATGATCTGAAGGAGAGACTGAGACTAGCTTTGAGTAATAAGCGGTTTGTGATCGTCTTAGATAACATTGGCAGCAAACAGAATTTGGAGAGCATTGCAAGTGCCTTACCAAATGGTTTATCTGGGAGTAAGATAATCACAACCAGTCGTAACTCAGATGTAGTTTCTAGTTTTGTTTCCTCCGAGTATACCCATGATTTGAGTCTGGGGATACCATGGAAAAATGCTTGGTATCTATTCTGCAAGAAGGCTTTTCAAAATAGGGAAGGATATTGTCCAGAGGCGCTTGAGGAGTGGGCTCAAAAAATCCTGAAGAGGTGTGAAGGTCTACCCCTTGCAATATCAGCTGTTGGGACTGCGCTAGCAAATAAGCCTCAAACTATACTAGAGTGGAAGAACTTTCATGACAGCCTCGGATCGGATGTTCCAAAAATTATAAGCCGTAGTTGGGAGCTAAGTTACAAGGATCTTTCAAGCAATCTTAAAAGTTGCTTCTTGTACTTTGGCATGTTTCCAGAAGACCGCTCCATCAGCAGGGAGAGACTAATTCGCTTGTGGGTCGCTGAAGGATTTGTGAAGCCACACAGAACAAAAAGGATAGAGCTGTTAGCAGCAAAGATCCGAAAGGACTTTGTCTCTTTGTTTTTCCGCTGCAAATTCTTCGTCCGACATTTGTCAGACGCCTCAATATTACGGCTCAACCCAGCTACCGCCGCATCTTCTTTTCCAAAAGTAGTTGCTGTTGCTGTGCCCAGCTGCCGCCGTCGTCGTCTCTGCCCCGCCGTCGTCGTCTCTGCCCAGAAGTTGTCATCGTGCCCAGAGGACGCCGCCGTGCCACAACCCGCGCCAAAACCCAGGTCTCGACGCCGCCGTGCCAAAGCCCAGGTCCCGACGCCACCGGTCTCGACGCTGCCGCGCCCTTGTGCCGTGCCGATCCACTCTACAGTTGAAGTATCTGTCAAGAATTCTGAAAGTGGTTCATTTGGGGGTGCCAAACTCAATGGAACCAATTTTCGGAAATGGAAGAAAATCATGACGGCTCATCTTCGAGGGATGCACAAGATGGGGCATGTAACTGGGACAATTAAGGCCCCTAGTGAAAGTGATGTTGATGCTTACACTAAGTGGGAAGATGATGATGGTCTTGTGATGTCAGTCTTGTACAAGGCAATGAATGAGGACATAGTCGACCTGGTGGAACAATGTGATACAGCTCAGGCGATCTGGAAGACACTGGAGGATTTATATACTAATGAGTCTGATTTCATACAGGTTCATGAGTTGATGTGCACTGCTTCCTCAATGCAACAGCATGGGCAGCCAGAAAAGGAGCTTGAGCGAGTTCATCACTTTCTGAGGGGTCTTGATGCAAAACACAACAGTGCCAAAGGAGAGCTACTCAGAATGACCGAACCTCCTAACCTGATTACAGCTTTCACATATATCCGTAAGGATGAGTCTCAGCAGGAAAGTCTTACTCAAGCACAACTTGAAGTCTCTAGTCTCACTATTCAAGCGAGAACACCAGCACCACTCCTTCAGCAATCAAGTTCAGTTCCACTTCACAAGCAAGGACCACCACCAGGCTTTGGGAACCAACCTCGTCCCCCTTGCTCTTATTGCAAGGGTGACCATGCTCAGCTTGTTGCAGAAGGTTATCTGAATGAACTCGTTGAAAGAAATTTGGTTGTGGTCACTGCCAGGGAAATCGATGGACGAGTCAAGCTTTGTCGTGTTCTAAACCTTGTTCGTGAGTACATCATTCCAAAAGCGAAGCATTTCATCACTGTCCTCGAAGCCAACAGTGCTGACAGCATTCTTCATGATACCCAAGTGTTTGGGGACTTTGAGGGGAAGACTACTGTTACTAGTTCTGAAATTCAAAAGGTTCTTAAAGCCTGTAAACTTTTAAGGGTTTTAGATTTGCAAGGTGCATCTCTTTTGGAGAACTTTCCTCAATATGTAAAGAGTCTCACCCTCTTAAGGTACTTAAATCTGAGTGAAACCCAAATTAAAACAATTCCAAAATCCATAAAGAACCTTGGATTTTTGGAAACCTTAGATCTTAAACAAACCAAGGTGACCTATTTGCCCCAAGAGATGGATGAACTCCACAGTTTGCGCCATCTTCTAGTCTATCGCCATGATATCAAGAATTACGTGAGTTTTGGAGCTGTACAAGGAGTGAATCTTTCTGCATGTAATATTGGAGCTTTAACTCGCATACAAAAGTTAACGCTGATTAAGGTGAACAGTAAAATCATAGAAGGCTTGGGAGAGTTAAAGAGTCTTAAGAGGTTGGGGATGATAGATCTCAAAAGAGTGCATGGACGCCAATTGTGTTTAGCAGTTGAGAAAATGGAGCATCTTTCCACATTTGATGTTCAATCAACAAGCGAGGACGAAATTCTTGATTTGGATCATATGAATTCCCCTCCACCCCATCTCCAACATCTATACATGAAGGGGAGACTAGAAGGCATACCAAAGTGGGTTCCTCAACTTCATAGCTTAGTAAAGGTTGGTTTGAAGTGGTCAAAACTGAAAGCTGCAGCCAATCCACTTGAGGCCCTTCAAGAATTACCTCATCTGTTGAAGCTCGAGCTGGCGAACTACTACGAAGGGAAAGAGTTAATATTCAAAGCTGCCACATTCAAGAAACTAATGATACTAAGTCTAGACAAATTTGATGGACTGAATTTCATGGAAGTTGAGTCAAGGGCAATGCCTATGCTTCAGAAGTTAACCATGTCTAGATGCCAGAATTTGAAGCTTCTTCCAGTATTTGCCCCTGATGATCTTAAATCCCTGAAAGAAGTGCTGCTATATGATATGTGCACTGAATTCATCGCTAACTTTGAAAGAGATGGAGAAGGCCGTGAGGTGTTTCAGCATGTCGGAAGCATCGAGTCTTTTATTCTTGGAAGCAACCATGCCCATTTCACTGGATATAAAAATCTTTCTCCATCGCAATGGCATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1249

Amino Acids

140.58

Weight (kDa)

8.73

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 91 1.1e-11 Rx N-terminal domain
NB-ARC PF00931 168 - 342 8.2e-33 NB-ARC domain
WHD_DRP PF23559 424 - 470 2.2e-09 Disease resistance protein Winged helix domain
Retrotran_gag_2 PF14223 599 - 675 1.3e-08 gag-polypeptide of LTR copia-type
LRR_14 PF23598 877 - 1197 3.6e-40 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1199
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 1751
AccB7I CCANNNNNTGG 2 cut(s) 2351, 2863
AccBSI CCGCTC 1 cut(s) 1287
AccI GTMKAC 3 cut(s) 950, 1090, 1950
AccII CGCG 3 cut(s) 303, 1607, 1678
AclWI GGATC 7 cut(s) 196, 665, 1186, 1236, 1375, 1690, 3189
AcuI CTGAAG 7 cut(s) 27, 495, 791, 1094, 1347, 2285, 3482
AcyI GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
AdeI CACNNNGTG 1 cut(s) 1887
AfaI GTAC 6 cut(s) 245, 1262, 1925, 2519, 2750, 2940
AfiI CCNNNNNNNGG 9 cut(s) 419, 1180, 1210, 1296, 1776, 2345, 2351, 2745, 2863
AflII CTTAAG 2 cut(s) 2743, 3053
AgeI ACCGGT 1 cut(s) 1660
AhlI ACTAGT 1 cut(s) 2630
AjiI CACGTC 1 cut(s) 671
AjnI CCWGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
AleI CACNNNNGTG 1 cut(s) 2142
AloI GAACNNNNNNTCC 2 cut(s) 1170, 1202
Alw21I GWGCWC 2 cut(s) 2054, 3602
Alw44I GTGCAC 2 cut(s) 2050, 3598
AlwI GGATC 7 cut(s) 196, 665, 1186, 1236, 1375, 1690, 3189
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 3362
AoxI GGCC 6 cut(s) 132, 345, 504, 1851, 3330, 3637
ApaLI GTGCAC 2 cut(s) 2050, 3598
ArsI GACNNNNNNTTYG 6 cut(s) 1410, 1442, 1604, 1632, 1636, 1664
AsiGI ACCGGT 1 cut(s) 1660
Asp700I GAANNNNTTC 3 cut(s) 180, 744, 2540
AspLEI GCGC 5 cut(s) 1048, 1123, 1609, 1680, 2886
AspS9I GGNCC 6 cut(s) 572, 718, 1648, 1852, 2336, 3331
AsuHPI GGTGA 6 cut(s) 55, 464, 2402, 2728, 2854, 3022
AsuNHI GCTAGC 1 cut(s) 1123
AvaI CYCGRG 1 cut(s) 3362
AvaII GGWCC 4 cut(s) 572, 718, 1648, 2336
BaeGI GKGCMC 4 cut(s) 1515, 1580, 2054, 3602
BaeI ACNNNNGTAYC 2 cut(s) 2580, 2613
BanI GGYRCC 1 cut(s) 1751
BanII GRGCYC 1 cut(s) 1063
BbsI GAAGAC 3 cut(s) 1287, 1997, 2624
Bbv12I GWGCWC 2 cut(s) 2054, 3602
BceAI ACGGC 9 cut(s) 1188, 1472, 1509, 1529, 1577, 1617, 1673, 1815, 3624
BcgI CGANNNNNNTGC 2 cut(s) 1405, 1439
BciT130I CCWGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
BciVI GTATCC 1 cut(s) 966
BcuI ACTAGT 1 cut(s) 2630
BfmI CTRYAG 3 cut(s) 749, 1704, 3312
BfoI RGCGCY 1 cut(s) 1049
BfrI CTTAAG 2 cut(s) 2743, 3053
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 966
BglII AGATCT 3 cut(s) 282, 2824, 3073
BlpI GCTNAGC 1 cut(s) 2400
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
Bme18I GGWCC 4 cut(s) 572, 718, 1648, 2336
BmeT110I CYCGRG 1 cut(s) 3362
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 6 cut(s) 572, 718, 1648, 1852, 2336, 3331
BmiI GGNNCC 8 cut(s) 462, 720, 1650, 1753, 1768, 1854, 2357, 3258
BmrFI CCNGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
BmrI ACTGGG 1 cut(s) 1848
BmsI GCATC 9 cut(s) 220, 1487, 1806, 1864, 2119, 2705, 3136, 3509, 3675
BmtI GCTAGC 1 cut(s) 1127
BmuI ACTGGG 1 cut(s) 1848
BoxI GACNNNNGTC 1 cut(s) 1435
BpiI GAAGAC 3 cut(s) 1287, 1997, 2624
BplI GAGNNNNNCTC 2 cut(s) 2145, 2177
BpmI CTGGAG 2 cut(s) 334, 2018
Bpu10I CCTNAGC 2 cut(s) 583, 1977
Bpu1102I GCTNAGC 1 cut(s) 2400
BpuEI CTTGAG 6 cut(s) 412, 727, 1070, 2117, 2226, 3347
Bsa29I ATCGAT 2 cut(s) 660, 2472
BsaAI YACGTR 1 cut(s) 2923
BsaBI GATNNNNATC 1 cut(s) 3180
BsaHI GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
BsaI GGTCTC 2 cut(s) 1626, 1669
BsaJI CCNNGG 7 cut(s) 977, 1174, 1616, 1644, 2463, 2803, 2838
BsaWI WCCGGW 1 cut(s) 1660
BsaXI ACNNNNNCTCC 4 cut(s) 2161, 2191, 3192, 3222
Bsc4I CCNNNNNNNGG 9 cut(s) 419, 1180, 1210, 1296, 1776, 2345, 2351, 2745, 2863
Bse118I RCCGGY 1 cut(s) 1660
Bse1I ACTGG 5 cut(s) 906, 1843, 2001, 3542, 3712
Bse3DI GCAATG 4 cut(s) 855, 1938, 3492, 3740
Bse8I GATNNNNATC 1 cut(s) 3180
BseBI CCWGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
BseCI ATCGAT 2 cut(s) 660, 2472
BseDI CCNNGG 7 cut(s) 977, 1174, 1616, 1644, 2463, 2803, 2838
BseGI GGATG 8 cut(s) 97, 132, 169, 1189, 1821, 2221, 2872, 3072
BseJI GATNNNNATC 1 cut(s) 3180
BseLI CCNNNNNNNGG 9 cut(s) 419, 1180, 1210, 1296, 1776, 2345, 2351, 2745, 2863
BseMI GCAATG 4 cut(s) 855, 1938, 3492, 3740
BseNI ACTGG 5 cut(s) 906, 1843, 2001, 3542, 3712
BseRI GAGGAG 2 cut(s) 44, 1067
BseSI GKGCMC 4 cut(s) 1515, 1580, 2054, 3602
BseYI CCCAGC 4 cut(s) 118, 464, 1465, 1514
Bsh1236I CGCG 3 cut(s) 303, 1607, 1678
BshFI GGCC 6 cut(s) 134, 347, 506, 1853, 3332, 3639
BshNI GGYRCC 1 cut(s) 1751
BshTI ACCGGT 1 cut(s) 1660
BshVI ATCGAT 2 cut(s) 660, 2472
BsiHKAI GWGCWC 2 cut(s) 2054, 3602
BsiHKCI CYCGRG 1 cut(s) 3362
BsiSI CCGG 1 cut(s) 1661
BslFI GGGAC 7 cut(s) 242, 302, 1129, 1634, 1855, 2352, 2618
BslI CCNNNNNNNGG 9 cut(s) 419, 1180, 1210, 1296, 1776, 2345, 2351, 2745, 2863
BsmBI CGTCTC 2 cut(s) 1538, 1558
BsmFI GGGAC 7 cut(s) 242, 302, 1129, 1634, 1855, 2352, 2618
BsmI GAATGC 2 cut(s) 23, 2577
BsnI GGCC 6 cut(s) 134, 347, 506, 1853, 3332, 3639
Bso31I GGTCTC 2 cut(s) 1626, 1669
BsoBI CYCGRG 1 cut(s) 3362
Bsp1286I GDGCHC 5 cut(s) 1063, 1515, 1580, 2054, 3602
Bsp1407I TGTACA 2 cut(s) 1923, 2938
Bsp1720I GCTNAGC 1 cut(s) 2400
Bsp19I CCATGG 1 cut(s) 977
BspANI GGCC 6 cut(s) 134, 347, 506, 1853, 3332, 3639
BspDI ATCGAT 2 cut(s) 660, 2472
BspFNI CGCG 3 cut(s) 303, 1607, 1678
BspHI TCATGA 4 cut(s) 1165, 1794, 2038, 2584
BspLI GGNNCC 8 cut(s) 462, 720, 1650, 1753, 1768, 1854, 2357, 3258
BspMAI CTGCAG 1 cut(s) 3316
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 1127
BspPI GGATC 7 cut(s) 196, 665, 1186, 1236, 1375, 1690, 3189
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 1751
BspTI CTTAAG 2 cut(s) 2743, 3053
BspTNI GGTCTC 2 cut(s) 1626, 1669
BsrBI CCGCTC 1 cut(s) 1287
BsrDI GCAATG 4 cut(s) 855, 1938, 3492, 3740
BsrFI RCCGGY 1 cut(s) 1660
BsrGI TGTACA 2 cut(s) 1923, 2938
BsrI ACTGG 5 cut(s) 906, 1843, 2001, 3542, 3712
BssAI RCCGGY 1 cut(s) 1660
BssECI CCNNGG 7 cut(s) 977, 1174, 1616, 1644, 2463, 2803, 2838
BssNAI GTATAC 1 cut(s) 951
BssNI GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
BssT1I CCWWGG 3 cut(s) 977, 2803, 2838
Bst1107I GTATAC 1 cut(s) 951
Bst2UI CCWGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
Bst6I CTCTTC 3 cut(s) 495, 504, 1070
BstACI GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
BstAFI CTTAAG 2 cut(s) 2743, 3053
BstAUI TGTACA 2 cut(s) 1923, 2938
BstBAI YACGTR 1 cut(s) 2923
BstC8I GCNNGC 5 cut(s) 334, 361, 623, 1125, 3369
BstDSI CCRYGG 1 cut(s) 977
BstEII GGTNACC 2 cut(s) 2390, 2842
BstF5I GGATG 8 cut(s) 97, 132, 169, 1189, 1821, 2221, 2872, 3072
BstFNI CGCG 3 cut(s) 303, 1607, 1678
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 5 cut(s) 1048, 1123, 1609, 1680, 2886
BstMWI GCNNNNNNNGC 8 cut(s) 37, 585, 1106, 1293, 1475, 2080, 2382, 2567
BstNI CCWGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
BstNSI RCATGY 6 cut(s) 736, 1273, 1835, 2964, 3659, 3743
BstPAI GACNNNNGTC 1 cut(s) 1435
BstPI GGTNACC 2 cut(s) 2390, 2842
BstSCI CCNGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
BstSFI CTRYAG 3 cut(s) 749, 1704, 3312
BstSLI GKGCMC 4 cut(s) 1515, 1580, 2054, 3602
BstUI CGCG 3 cut(s) 303, 1607, 1678
BstV2I GAAGAC 3 cut(s) 1287, 1997, 2624
BstX2I RGATCY 6 cut(s) 201, 282, 1228, 1380, 2824, 3073
BstXI CCANNNNNNTGG 3 cut(s) 2600, 3707, 3735
BstYI RGATCY 6 cut(s) 201, 282, 1228, 1380, 2824, 3073
BstZ17I GTATAC 1 cut(s) 951
Bsu15I ATCGAT 2 cut(s) 660, 2472
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 6 cut(s) 134, 347, 506, 1853, 3332, 3639
BsuTUI ATCGAT 2 cut(s) 660, 2472
BtgI CCRYGG 1 cut(s) 977
BtgZI GCGATG 3 cut(s) 423, 3595, 3714
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 8 cut(s) 97, 132, 169, 1189, 1821, 2221, 2872, 3072
BtsI GCAGTG 2 cut(s) 2052, 2457
BtsIMutI CAGTG 9 cut(s) 643, 1994, 2052, 2149, 2457, 2547, 2572, 3600, 3705
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 5 cut(s) 334, 361, 623, 1125, 3369
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 4 cut(s) 1165, 1794, 2038, 2584
CfoI GCGC 5 cut(s) 1048, 1123, 1609, 1680, 2886
Cfr10I RCCGGY 1 cut(s) 1660
Cfr13I GGNCC 6 cut(s) 572, 718, 1648, 1852, 2336, 3331
ClaI ATCGAT 2 cut(s) 660, 2472
CseI GACGC 6 cut(s) 1451, 1595, 1635, 1663, 1678, 3102
CsiI ACCWGGT 1 cut(s) 1953
Csp6I GTAC 6 cut(s) 244, 1261, 1924, 2518, 2749, 2939
CspAI ACCGGT 1 cut(s) 1660
CviQI GTAC 6 cut(s) 244, 1261, 1924, 2518, 2749, 2939
DraIII CACNNNGTG 1 cut(s) 1887
Eam1104I CTCTTC 3 cut(s) 495, 504, 1070
EarI CTCTTC 3 cut(s) 495, 504, 1070
Eco130I CCWWGG 3 cut(s) 977, 2803, 2838
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 1063
Eco31I GGTCTC 2 cut(s) 1626, 1669
Eco32I GATATC 2 cut(s) 561, 2911
Eco47I GGWCC 4 cut(s) 572, 718, 1648, 2336
Eco57I CTGAAG 7 cut(s) 27, 495, 791, 1094, 1347, 2285, 3482
Eco88I CYCGRG 1 cut(s) 3362
Eco91I GGTNACC 2 cut(s) 2390, 2842
EcoO109I RGGNCCY 4 cut(s) 572, 1648, 1852, 3331
EcoO65I GGTNACC 2 cut(s) 2390, 2842
EcoRI GAATTC 4 cut(s) 402, 1726, 3190, 3605
EcoRII CCWGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
EcoRV GATATC 2 cut(s) 561, 2911
EcoT14I CCWWGG 3 cut(s) 977, 2803, 2838
EcoT38I GRGCYC 1 cut(s) 1063
ErhI CCWWGG 3 cut(s) 977, 2803, 2838
Esp3I CGTCTC 2 cut(s) 1538, 1558
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 2235, 2267
FaqI GGGAC 7 cut(s) 242, 302, 1129, 1634, 1855, 2352, 2618
FauI CCCGC 2 cut(s) 1549, 1612
FauNDI CATATG 1 cut(s) 3186
FblI GTMKAC 3 cut(s) 950, 1090, 1950
FokI GGATG 8 cut(s) 104, 139, 176, 1196, 1828, 2228, 2879, 3079
FriOI GRGCYC 1 cut(s) 1063
GlaI GCGC 5 cut(s) 1047, 1122, 1608, 1679, 2885
GsaI CCCAGC 4 cut(s) 122, 468, 1469, 1518
GsuI CTGGAG 2 cut(s) 334, 2018
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 6 cut(s) 134, 347, 506, 1853, 3332, 3639
HapII CCGG 1 cut(s) 1661
HgaI GACGC 6 cut(s) 1451, 1595, 1635, 1663, 1678, 3102
HhaI GCGC 5 cut(s) 1048, 1123, 1609, 1680, 2886
Hin1I GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
Hin6I GCGC 5 cut(s) 1046, 1121, 1607, 1678, 2884
HinP1I GCGC 5 cut(s) 1046, 1121, 1607, 1678, 2884
HincII GTYRAC 3 cut(s) 1951, 2997, 3507
HindII GTYRAC 3 cut(s) 1951, 2997, 3507
HindIII AAGCTT 2 cut(s) 2486, 3533
HpaI GTTAAC 2 cut(s) 2997, 3507
HpaII CCGG 1 cut(s) 1661
HphI GGTGA 6 cut(s) 55, 464, 2402, 2728, 2854, 3022
Hpy99I CGWCG 7 cut(s) 1530, 1533, 1550, 1553, 1629, 1657, 1672
HpyCH4IV ACGT 3 cut(s) 550, 670, 2922
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 585, 1106, 1293, 1475, 2080, 2382, 2567
HpySE526I ACGT 3 cut(s) 550, 670, 2922
Hsp92I GRCGYC 5 cut(s) 1443, 1587, 1627, 1655, 3094
HspAI GCGC 5 cut(s) 1046, 1121, 1607, 1678, 2884
KspAI GTTAAC 2 cut(s) 2997, 3507
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 8 cut(s) 341, 466, 1213, 1292, 2092, 2933, 2972, 3124
LweI GCATC 9 cut(s) 220, 1487, 1806, 1864, 2119, 2705, 3136, 3509, 3675
MabI ACCWGGT 1 cut(s) 1953
MaeII ACGT 3 cut(s) 550, 670, 2922
MaeIII GTNAC 7 cut(s) 911, 1220, 1834, 2390, 2455, 2626, 2842
MbiI CCGCTC 1 cut(s) 1287
MfeI CAATTG 2 cut(s) 564, 3098
MflI RGATCY 6 cut(s) 201, 282, 1228, 1380, 2824, 3073
MhlI GDGCHC 5 cut(s) 1063, 1515, 1580, 2054, 3602
MlyI GAGTC 8 cut(s) 973, 2027, 2228, 2490, 2740, 3058, 3485, 3680
MmeI TCCRAC 3 cut(s) 1453, 3235, 3640
MroXI GAANNNNTTC 3 cut(s) 180, 744, 2540
MslI CAYNNNNRTG 3 cut(s) 648, 2142, 3733
MspA1I CMGCKG 3 cut(s) 1109, 1413, 1518
MspCI CTTAAG 2 cut(s) 2743, 3053
MspI CCGG 1 cut(s) 1661
MspR9I CCNGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
MunI CAATTG 2 cut(s) 564, 3098
Mva1269I GAATGC 2 cut(s) 23, 2577
MvaI CCWGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
MvnI CGCG 3 cut(s) 303, 1607, 1678
MwoI GCNNNNNNNGC 8 cut(s) 37, 585, 1106, 1293, 1475, 2080, 2382, 2567
NcoI CCATGG 1 cut(s) 977
NdeI CATATG 1 cut(s) 3186
NheI GCTAGC 1 cut(s) 1123
NlaIV GGNNCC 8 cut(s) 462, 720, 1650, 1753, 1768, 1854, 2357, 3258
NmuCI GTSAC 3 cut(s) 2390, 2455, 2842
NspI RCATGY 6 cut(s) 736, 1273, 1835, 2964, 3659, 3743
OliI CACNNNNGTG 1 cut(s) 2142
PaeR7I CTCGAG 1 cut(s) 3362
PagI TCATGA 4 cut(s) 1165, 1794, 2038, 2584
PaqCI CACCTGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 1630, 3666
PctI GAATGC 2 cut(s) 23, 2577
PdmI GAANNNNTTC 3 cut(s) 180, 744, 2540
PfeI GAWTC 2 cut(s) 354, 2950
PflFI GACNNNGTC 2 cut(s) 1394, 1946
PflMI CCANNNNNTGG 2 cut(s) 2351, 2863
PinAI ACCGGT 1 cut(s) 1660
PleI GAGTC 8 cut(s) 972, 2026, 2227, 2489, 2739, 3057, 3484, 3679
PpsI GAGTC 8 cut(s) 972, 2026, 2227, 2489, 2739, 3057, 3484, 3679
Ppu21I YACGTR 1 cut(s) 2923
PpuMI RGGWCCY 2 cut(s) 572, 1648
PshAI GACNNNNGTC 1 cut(s) 1435
PsiI TTATAA 1 cut(s) 1199
Psp5II RGGWCCY 2 cut(s) 572, 1648
Psp6I CCWGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
PspEI GGTNACC 2 cut(s) 2390, 2842
PspFI CCCAGC 4 cut(s) 118, 464, 1465, 1514
PspGI CCWGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
PspN4I GGNNCC 8 cut(s) 462, 720, 1650, 1753, 1768, 1854, 2357, 3258
PspPI GGNCC 6 cut(s) 572, 718, 1648, 1852, 2336, 3331
PspPPI RGGWCCY 2 cut(s) 572, 1648
PspXI VCTCGAGB 1 cut(s) 3362
PsrI GAACNNNNNNTAC 2 cut(s) 732, 764
PstI CTGCAG 1 cut(s) 3316
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 6 cut(s) 201, 282, 1228, 1380, 2824, 3073
PsyI GACNNNGTC 2 cut(s) 1394, 1946
PvuII CAGCTG 2 cut(s) 1109, 1518
RsaI GTAC 6 cut(s) 245, 1262, 1925, 2519, 2750, 2940
RsaNI GTAC 6 cut(s) 244, 1261, 1924, 2518, 2749, 2939
RseI CAYNNNNRTG 3 cut(s) 648, 2142, 3733
SalI GTCGAC 1 cut(s) 1949
SapI GCTCTTC 1 cut(s) 504
Sau96I GGNCC 6 cut(s) 572, 718, 1648, 1852, 2336, 3331
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 8 cut(s) 973, 2027, 2228, 2490, 2740, 3058, 3485, 3680
ScrFI CCNGG 6 cut(s) 576, 1618, 1646, 1955, 2346, 2464
SduI GDGCHC 5 cut(s) 1063, 1515, 1580, 2054, 3602
SexAI ACCWGGT 1 cut(s) 1953
SfaNI GCATC 9 cut(s) 220, 1487, 1806, 1864, 2119, 2705, 3136, 3509, 3675
SfcI CTRYAG 3 cut(s) 749, 1704, 3312
Sfr274I CTCGAG 1 cut(s) 3362
SinI GGWCC 4 cut(s) 572, 718, 1648, 2336
SlaI CTCGAG 1 cut(s) 3362
SmiMI CAYNNNNRTG 3 cut(s) 648, 2142, 3733
SmlI CTYRAG 9 cut(s) 427, 706, 1049, 2096, 2241, 2743, 3053, 3326, 3362
SmoI CTYRAG 9 cut(s) 427, 706, 1049, 2096, 2241, 2743, 3053, 3326, 3362
SpeI ACTAGT 1 cut(s) 2630
SseBI AGGCCT 1 cut(s) 134
SspI AATATT 3 cut(s) 1452, 2968, 3399
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 6 cut(s) 574, 1616, 1644, 1953, 2344, 2462
StyI CCWWGG 3 cut(s) 977, 2803, 2838
TaiI ACGT 3 cut(s) 553, 673, 2925
TaqII GACCGA 1 cut(s) 2186
TatI WGTACW 5 cut(s) 243, 1260, 1923, 2517, 2938
TauI GCSGC 6 cut(s) 582, 1478, 1524, 1592, 1632, 1678
TfiI GAWTC 2 cut(s) 354, 2950
TscAI CASTG 9 cut(s) 650, 2001, 2059, 2149, 2464, 2554, 2572, 3607, 3712
TseFI GTSAC 3 cut(s) 2390, 2455, 2842
Tsp45I GTSAC 3 cut(s) 2390, 2455, 2842
TspGWI ACGGA 1 cut(s) 2198
TspRI CASTG 9 cut(s) 650, 2001, 2059, 2149, 2464, 2554, 2572, 3607, 3712
Tth111I GACNNNGTC 2 cut(s) 1394, 1946
Van91I CCANNNNNTGG 2 cut(s) 2351, 2863
Vha464I CTTAAG 2 cut(s) 2743, 3053
VneI GTGCAC 2 cut(s) 2050, 3598
VpaK11BI GGWCC 4 cut(s) 572, 718, 1648, 2336
XbaI TCTAGA 2 cut(s) 3439, 3515
XceI RCATGY 6 cut(s) 736, 1273, 1835, 2964, 3659, 3743
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 3362
XmiI GTMKAC 3 cut(s) 950, 1090, 1950
XmnI GAANNNNTTC 3 cut(s) 180, 744, 2540
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.