Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000865

Physical Location & Seq

Genomic Coordinates Forward (+)

22573779 .. 22574126

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGAACTTGCAATTCCTTTAGCATTGTTGGTGGCCGAGAAGGCGATGAGCATGTGCGATCGAAGAAACAAGTCCAACGACCGAAGTACTAATATCCATGATGAGGTTGAAAGAGCCTGCAAATGTCTGAAGAAGATGCAAGCCTATCTAGGGGACTCGGAAAAGATTGATGAAGGCAGCCTAATGCTTCAAAATCGTGTTGAAGAGGTCCAAAACCTGGCTTATGAAATTGAAGATGCTCTTGACAAGTTCATGGCTCAGATTCCACATCGCTTCCACAGCAACATGTTCTCTCAAAAGCTGAACGACGGCCCATTATCGAACAGAAAAGAACGCAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

116

Amino Acids

13.23

Weight (kDa)

6.3

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	28 - 94	3.1e-12	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000865)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g16711 FvH4_3g16712 FvH4_3g16720
malus_domestica	MD05G1207400.v1.1 MD05G1207700.v1.1 MD05G1207800.v1.1
prunus_persica	Prupe.4G149700_v2.0.a1 Prupe.4G149800_v2.0.a1 Prupe.4G149900_v2.0.a1
pyrus_communis	pycom05g19370
rosa_chinensis	RchiOBHm_Chr0c21g0500341 RchiOBHm_Chr0c21g0500371 RchiOBHm_Chr2g0091131 RchiOBHm_Chr2g0127031 RchiOBHm_Chr2g0127041 RchiOBHm_Chr2g0127051 RchiOBHm_Chr2g0127891 RchiOBHm_Chr2g0167971 RchiOBHm_Chr2g0168051 RchiOBHm_Chr2g0168061 RchiOBHm_Chr2g0168221 RchiOBHm_Chr4g0399061 RchiOBHm_Chr5g0027671 RchiOBHm_Chr5g0027831
rosa_laevigata	RLG00000016184 RLG00000033046 RLG00000033047 RLG00000033049
rosa_multiflora	Rmu_co8364439.1_g000001 Rmu_sc0000920.1_g000014 Rmu_sc0001647.1_g000020 Rmu_sc0003033.1_g000048 Rmu_sc0004851.1_g000010 Rmu_sc0006599.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051770 Rroxscaffold_1G00051790 Rroxscaffold_1G00051800
rosa_rugosa	Rorug02G0013500 Rorug02G0013700 Rorug05G0101600 Rorug05G0101800 Rorug05G0101900 Rorug05G0101900 Rorug05G0102100
rosa_samantha	Rh2BG058100 Rh2BG331500 Rh2BG613000 Rh2BG613300 Rh2BG614100 Rh2CG059900 Rh4AG091700 Rh4CG100000 Rh5AG195900 Rh5AG196300 Rh5AG196400 Rh5BG194100 Rh5CG205000 Rh5CG213200 Rh5CG214300 Rh5DG195100 Rh5DG195800 Rh5DG196100 Rh7AG354400
rosa_wichuraiana	Rw5G017760 Rw5G017850 Rw5G017880 Rw7G030110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	106, 153, 220
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	113, 194, 206, 236
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
AoxI	GGCC	2 cut(s)	36, 313
ApeKI	GCWGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	211, 314
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	221
BfaI	CTAG	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 314
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	129, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 153, 220
BseBI	CCWGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	106, 153, 220
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	192
Bsh1285I	CGRYCG	2 cut(s)	64, 85
BshFI	GGCC	2 cut(s)	38, 315
BsiEI	CGRYCG	2 cut(s)	64, 85
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	106, 153, 220
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	38, 315
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	38, 315
BspCNI	CTCAG	1 cut(s)	274
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	121, 144
BstDEI	CTNAG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	2 cut(s)	64, 85
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 44, 282
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	58, 292
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	38, 315
BtgZI	GCGATG	2 cut(s)	62, 257
Cac8I	GCNNGC	2 cut(s)	121, 144
Cfr13I	GGNCC	2 cut(s)	211, 314
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	4 cut(s)	55, 101, 256, 289
CviJI	RGCY	8 cut(s)	38, 119, 146, 183, 224, 260, 304, 315
CviKI_1	RGCY	8 cut(s)	38, 119, 146, 183, 224, 260, 304, 315
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	58, 104, 259, 292
FaiI	YATR	5 cut(s)	56, 102, 228, 257, 290
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	54, 100, 255, 288
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	38, 315
Hin1II	CATG	4 cut(s)	58, 104, 259, 292
HinfI	GANTC	2 cut(s)	158, 265
Hpy188I	TCNGA	3 cut(s)	132, 163, 264
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	37, 170
HpyCH4V	TGCA	3 cut(s)	14, 123, 142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 44, 282
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	58, 104, 259, 292
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	3 cut(s)	133, 206, 233
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	2 cut(s)	129, 229
MaeI	CTAG	1 cut(s)	152
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	5 cut(s)	78, 145, 148, 218, 248
MluCI	AATT	2 cut(s)	15, 231
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	100, 202
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	11, 44, 282
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	58, 104, 259, 292
NmeAIII	GCCGAG	1 cut(s)	64
NspI	RCATGY	2 cut(s)	58, 292
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	182
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	211, 314
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	211, 314
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	4 cut(s)	111, 213, 222, 306
SfaNI	GCATC	2 cut(s)	129, 229
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	15, 231
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	64, 323
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	15, 231
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	3 cut(s)	189, 243, 244
Van91I	CCANNNNNTGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	2 cut(s)	58, 292
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.