Rw5G017880

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000865
Physical Location & Seq
Forward (+)
22947101 .. 22950240
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017880.1

Sequence Viewer

Length: 2814 bp
ATGGCTGAACTTGCCATTCCTGTAGCACTGGCCTTAATTGACAAGGTGATAATCATCCTCCAGCAAAACTTTCACCGTCAAACTAGAGTCAAGGATGATGTTGAAAAAGCCAAGAATTGGTTGAGGAGGATGGAAGCGTATCTAGCCGACACATCAGAACATAGCGATGAGGGTACTCGAGTGTTTCAGACTCGAGTAAGAGAAATCCAAGATTTGGTTTATGAAATTGAGGATGCTCTCGACAAGTTCATGCTTCAGGTTCCTCATCACATCCATAGCAATATAGCCTCTCAGACGGTACACAAAGCTGTTCATTATTTGCCAACCAGGAATGCAGGCAAGGAGTTGTCGACTGAGATTAATGGTATCGAGAAAAAAGTTCGTTGGATTACAGAACTAGATGCTCTTCATATCCAAGCTCCAGCACAAAGCCGCCCAAGTTCCAGTTCCGGGGAAGGAATGACCCACTACTACCATGTTCTTGAAGAAGAAGAAGAAATAGTGGGCTTCGAGGAGCATGAAGAAAAACTCTTGGCACAGTTGATGGAAGAAAATTCAAGTCTTTTGACGATTTCGATTGTAGGCCCGGGCGGTTCCGGCAAAACCACTCTGGCAAAGAAGGTTTTCGACAACAAGCGGGTGCAAGAGTTTTTTGACTGCCAAGCTTGGGTTGATGTGCCACGCGCATTTGTACCCAAAGAGGTTTTGCCAAACATTCTAAGCAAAATTGAGGCAAAAGGGCAGAAGGAACCAGTAATTCATGGAGAAAATCCAAAGGATAAATTGAGACGACTTCTCAAGGACAAGCGGTTTTTGGTCGTTTTGGATAATGTTTGGAACAGAACAAATTTGGAATGCGTCGTAGATGCATTACAACTTGGTTTTAATGGCAGTAGAATCATCATCACTACTCGTAATGGAGCTTCTATTTCCTCTGAGCCATATGTCCTTGATTTGAGTGATGGTTTACCTAGGGAAAAAGCCGAGTACCTATTCTGCAAGAAGGTTTTTCAAAGCAGTAAAGGAAGTTGTCCATTCGAGCTCGATGACTGGGCCCAACAAATTCTGAAGAGGTGTGAAGGCCTGCCATTTGCAATTTCAGCTGTTGGCACTTATCTTTCCACTAAGCCGAAAACTCCAGTTGAGTGGAAGAATTTCCATAACAGCCTTGGATCAGAAATTAGAGAAGACTCAAATCTTTCGGTTATTAGCCTTATTTTACAGCCAAGTTACAAGGATCTTCCAAACCATCTGAAATATTGTTTCCTGTACTTCAGCATATTTCCTGAAGACTACTCCATCATGCGTCAAAGACTAATTCGTTTGTGGATAGCTGAAGGAATTGTGAAGAGCAAAAGAGGAATGACAATGGAACAGGTGGCAGAAGGTTATCTGAATGAGCTTGTTAGAAGAAATTTGGTGCATACCAGCGCCAGGGAAATCGATGGACGAGTAAGGAGTTGTCGTGTTTTGAAACTTGTTCGTGACTTCATCATTTCAAAAGCCGAGAATTTCATTAGTGTTTTGGATCAAACTGGTACTAGCGGTATTTCAGGTGAGAAAATACGCCGCCTTTCTATTCATAATGCCGATATCAAATTGCTAGAGTCTAGATATGACTTGAGTCATATTCGTAACCTATTACTATTCCAGCAGCAAATTTCTCATTCTGTGCTTGAAAGGGTAGTTGAAAGATCTCGAAATTTTAGGGTTTTAGATTTGCAAGGTGTGCCCTTAGAGGATTTTCCCGACAGTGTTCTTGCTCTCACTCTCTTAAAATACTTGAGTCTCAGAGAAACTAACGTTAAAACAGTTCCAAAGTCCATAAAGAATCTAGCACGCTTGGAAACCTTGGATCTTAAGCACACTCAAGTCACCACTTTGCCAAAAGAGATTTATGAGCTCCACAGTATGCGCCATCTTTTAGTGTATCGCTATGATGTCCAGAATTATGTGATGTTTGGAGATGCCCAAGGAGTGGAGGTTTCTCAAAGCATGCTTTCTGCAGCGAATATTGGAGCTTTATCATCTCTACAAAAGTTGTCACTAATGAAGGTGAAAAACAACAAAAAACTCATTAAAGCCTTGGGAAGGCTAACTGATCTTAGAAAGCTGGGGCTGACAGATCTAGAAAGACAAGACGGAAGAGATCTGTGTTTAGCCATTCAAAAGATGAAGCATCTTTCAACATTTGATGTAAGATCAACAAGTGTGGACGAGCCTCTTGAGTTGGATCATATGCAATCTGGATCCCCTCCACCACTCTATCTAGAGAGATTATATTTGAAAGGGAGTCTAGAAAGGTTACCACGGTGGATTCCTGAGCTTAATAGTCTAGCAAAGATTGGTTTGAAGTGGTCAAAGCTGGATGCTAAGCTTATTCACCCACTTGACGCCCTTCAAGGTTTGCCTAATCTAATGCAGCTCGAGTTGGTTGACTATTACCGAGGGGAAGTGCTAGAATTCAGTACCGATACGTTCAAGAAACTAAAGATATTACATATTGAACAATTTGAAGGGCTAAATAGGATGGTAGTCCAGAGTGGAGCAATGCCTATGCTTGAGAAGCTAACCATGTGTAAATGTCGGAATTTGAAGTTACTTCCAGCATTTGGCCCTGATGATCTGAAATCACTGGAGGAACTGCTTCTGTATGACATGCACAAGGAATTCATTGCCAAGCTTCAGAATGATTCCGAAGACCGTCTGGGGTATAAGCATGTTAGAGTCATACATTCTTTCAGTCTCGGCAGCAACCATTCTTTCACTGATTTCAAGAATCTTTCTCCATCACAGTGGCTTGTGGAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

937

Amino Acids

107.33

Weight (kDa)

8.1

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 92 1.3e-13 Rx N-terminal domain
NB-ARC PF00931 171 - 340 4.8e-31 NB-ARC domain
WHD_DRP PF23559 427 - 498 7.4e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 543 - 882 1e-38 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 117, 214, 1978, 2612
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 684
AciI CCGC 6 cut(s) 433, 591, 637, 808, 1545, 1570
AclI AACGTT 1 cut(s) 1803
AclWI GGATC 7 cut(s) 1180, 1245, 1536, 1863, 2241, 2244, 2257
AcuI CTGAAG 6 cut(s) 239, 1088, 1258, 1308, 1356, 2669
AcyI GRCGYC 1 cut(s) 2394
AfaI GTAC 7 cut(s) 175, 300, 693, 989, 1271, 1540, 2470
AfiI CCNNNNNNNGG 8 cut(s) 117, 214, 450, 667, 1434, 1978, 2091, 2612
AflII CTTAAG 1 cut(s) 1859
AjnI CCWGG 2 cut(s) 326, 1433
AjuI GAANNNNNNNTTGG 2 cut(s) 430, 462
Alw21I GWGCWC 2 cut(s) 1044, 1905
Alw26I GTCTC 3 cut(s) 781, 1793, 2750
AlwI GGATC 7 cut(s) 1180, 1245, 1536, 1863, 2241, 2244, 2257
Ama87I CYCGRG 4 cut(s) 177, 192, 586, 2426
AoxI GGCC 5 cut(s) 30, 583, 1053, 1081, 2614
ApaI GGGCCC 1 cut(s) 1057
ApeKI GCWGC 4 cut(s) 1654, 2006, 2422, 2751
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 3 cut(s) 623, 1154, 2646
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 3 cut(s) 686, 1433, 1917
AspS9I GGNCC 4 cut(s) 584, 1053, 1054, 2615
AsuC2I CCSGG 3 cut(s) 451, 587, 588
AsuHPI GGTGA 6 cut(s) 58, 65, 1568, 1867, 2068, 2375
AvaI CYCGRG 4 cut(s) 177, 192, 586, 2426
AvrII CCTAGG 1 cut(s) 971
BaeGI GKGCMC 2 cut(s) 1057, 1734
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BamHI GGATCC 1 cut(s) 2249
BanII GRGCYC 3 cut(s) 1044, 1057, 1905
BarI GAAGNNNNNNTAC 2 cut(s) 907, 939
BbsI GAAGAC 3 cut(s) 1194, 1296, 2706
Bbv12I GWGCWC 2 cut(s) 1044, 1905
BbvI GCAGC 4 cut(s) 1666, 2018, 2434, 2763
BccI CCATC 9 cut(s) 124, 538, 956, 1257, 1307, 1439, 1926, 2524, 2797
BciT130I CCWGG 2 cut(s) 328, 1435
BcnI CCSGG 3 cut(s) 451, 587, 588
BcoDI GTCTC 3 cut(s) 781, 1793, 2750
BfmI CTRYAG 2 cut(s) 21, 2004
BfoI RGCGCY 1 cut(s) 1434
BfrI CTTAAG 1 cut(s) 1859
BglII AGATCT 3 cut(s) 1694, 2125, 2149
BisI GCNGC 6 cut(s) 433, 1570, 1655, 2007, 2423, 2752
BlnI CCTAGG 1 cut(s) 971
BlpI GCTNAGC 1 cut(s) 2373
BlsI GCNGC 6 cut(s) 434, 1571, 1656, 2008, 2424, 2753
Bme1390I CCNGG 5 cut(s) 328, 451, 587, 588, 1435
BmeT110I CYCGRG 4 cut(s) 177, 192, 586, 2426
BmgT120I GGNCC 4 cut(s) 584, 1053, 1054, 2615
BmiI GGNNCC 5 cut(s) 261, 595, 750, 1055, 2251
BmrFI CCNGG 5 cut(s) 328, 451, 587, 588, 1435
BmrI ACTGGG 1 cut(s) 1060
BmsI GCATC 6 cut(s) 223, 391, 856, 1957, 2188, 2359
BmuI ACTGGG 1 cut(s) 1060
BoxI GACNNNNGTC 1 cut(s) 1623
BpiI GAAGAC 3 cut(s) 1194, 1296, 2706
BpmI CTGGAG 4 cut(s) 44, 405, 1122, 2657
Bpu10I CCTNAGC 1 cut(s) 2322
Bpu1102I GCTNAGC 1 cut(s) 2373
BpuEI CTTGAG 6 cut(s) 782, 1642, 1804, 1854, 2246, 2582
BpuMI CCSGG 3 cut(s) 451, 587, 588
Bsa29I ATCGAT 1 cut(s) 1443
BsaBI GATNNNNATC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 2394
BsaXI ACNNNNNCTCC 4 cut(s) 1450, 1480, 1968, 1998
Bsc4I CCNNNNNNNGG 8 cut(s) 117, 214, 450, 667, 1434, 1978, 2091, 2612
Bse1I ACTGG 7 cut(s) 33, 444, 752, 1055, 1139, 1540, 2640
Bse3DI GCAATG 2 cut(s) 2556, 2673
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 2 cut(s) 328, 1435
BseCI ATCGAT 1 cut(s) 1443
BseGI GGATG 7 cut(s) 54, 100, 135, 238, 270, 2374, 2535
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 8 cut(s) 117, 214, 450, 667, 1434, 1978, 2091, 2612
BseMI GCAATG 2 cut(s) 2556, 2673
BseMII CTCAG 5 cut(s) 305, 345, 927, 1804, 2313
BseNI ACTGG 7 cut(s) 33, 444, 752, 1055, 1139, 1540, 2640
BseRI GAGGAG 2 cut(s) 139, 527
BseSI GKGCMC 2 cut(s) 1057, 1734
BseXI GCAGC 4 cut(s) 1666, 2018, 2434, 2763
BseYI CCCAGC 1 cut(s) 2113
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 5 cut(s) 32, 585, 1055, 1083, 2616
BshVI ATCGAT 1 cut(s) 1443
BsiHKAI GWGCWC 2 cut(s) 1044, 1905
BsiHKCI CYCGRG 4 cut(s) 177, 192, 586, 2426
BsiSI CCGG 3 cut(s) 450, 587, 597
BslI CCNNNNNNNGG 8 cut(s) 117, 214, 450, 667, 1434, 1978, 2091, 2612
BsmAI GTCTC 3 cut(s) 781, 1793, 2750
BsmBI CGTCTC 1 cut(s) 781
BsmI GAATGC 2 cut(s) 337, 860
BsnI GGCC 5 cut(s) 32, 585, 1055, 1083, 2616
BsoBI CYCGRG 4 cut(s) 177, 192, 586, 2426
Bsp120I GGGCCC 1 cut(s) 1053
Bsp1286I GDGCHC 4 cut(s) 1044, 1057, 1734, 1905
Bsp1720I GCTNAGC 1 cut(s) 2373
BspACI CCGC 6 cut(s) 433, 591, 637, 808, 1545, 1570
BspANI GGCC 5 cut(s) 32, 585, 1055, 1083, 2616
BspCNI CTCAG 5 cut(s) 304, 346, 928, 1803, 2314
BspDI ATCGAT 1 cut(s) 1443
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 5 cut(s) 261, 595, 750, 1055, 2251
BspMAI CTGCAG 1 cut(s) 2008
BspPI GGATC 7 cut(s) 1180, 1245, 1536, 1863, 2241, 2244, 2257
BspQI GCTCTTC 2 cut(s) 411, 1343
BspTI CTTAAG 1 cut(s) 1859
BsrDI GCAATG 2 cut(s) 2556, 2673
BsrI ACTGG 7 cut(s) 33, 444, 752, 1055, 1139, 1540, 2640
BssNI GRCGYC 1 cut(s) 2394
BssT1I CCWWGG 5 cut(s) 971, 1168, 1851, 1972, 2085
Bst2UI CCWGG 2 cut(s) 328, 1435
Bst4CI ACNGT 9 cut(s) 77, 298, 540, 1754, 1813, 1910, 2313, 2705, 2796
Bst6I CTCTTC 4 cut(s) 411, 1064, 1343, 2140
BstACI GRCGYC 1 cut(s) 2394
BstAFI CTTAAG 1 cut(s) 1859
BstAPI GCANNNNNTGC 1 cut(s) 1729
BstC8I GCNNGC 4 cut(s) 337, 1085, 1840, 1997
BstDSI CCRYGG 1 cut(s) 2309
BstEII GGTNACC 1 cut(s) 2304
BstENI CCTNNNNNAGG 1 cut(s) 2089
BstF5I GGATG 7 cut(s) 54, 100, 135, 238, 270, 2374, 2535
BstFNI CGCG 1 cut(s) 684
BstH2I RGCGCY 1 cut(s) 1434
BstHHI GCGC 3 cut(s) 686, 1433, 1917
BstMAI GTCTC 3 cut(s) 781, 1793, 2750
BstMWI GCNNNNNNNGC 6 cut(s) 11, 143, 597, 1100, 1729, 2566
BstNI CCWGG 2 cut(s) 328, 1435
BstNSI RCATGY 3 cut(s) 1999, 2662, 2723
BstPAI GACNNNNGTC 1 cut(s) 1623
BstPI GGTNACC 1 cut(s) 2304
BstSCI CCNGG 5 cut(s) 326, 449, 585, 586, 1433
BstSFI CTRYAG 2 cut(s) 21, 2004
BstSLI GKGCMC 2 cut(s) 1057, 1734
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 4 cut(s) 1666, 2018, 2434, 2763
BstV2I GAAGAC 3 cut(s) 1194, 1296, 2706
BstX2I RGATCY 6 cut(s) 1237, 1694, 1855, 2125, 2149, 2249
BstXI CCANNNNNNTGG 2 cut(s) 1146, 2796
BstYI RGATCY 6 cut(s) 1237, 1694, 1855, 2125, 2149, 2249
Bsu15I ATCGAT 1 cut(s) 1443
BsuRI GGCC 5 cut(s) 32, 585, 1055, 1083, 2616
BsuTUI ATCGAT 1 cut(s) 1443
BtgI CCRYGG 1 cut(s) 2309
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 7 cut(s) 54, 100, 135, 238, 270, 2374, 2535
BtsIMutI CAGTG 5 cut(s) 26, 1759, 2633, 2766, 2801
Cac8I GCNNGC 4 cut(s) 337, 1085, 1840, 1997
CfoI GCGC 3 cut(s) 686, 1433, 1917
Cfr13I GGNCC 4 cut(s) 584, 1053, 1054, 2615
Cfr9I CCCGGG 1 cut(s) 586
ClaI ATCGAT 1 cut(s) 1443
CseI GACGC 3 cut(s) 847, 1295, 2402
Csp6I GTAC 7 cut(s) 174, 299, 692, 988, 1270, 1539, 2469
CspCI CAANNNNNGTGG 2 cut(s) 2193, 2228
CviAII CATG 9 cut(s) 250, 476, 518, 761, 1303, 1996, 2575, 2659, 2720
CviQI GTAC 7 cut(s) 174, 299, 692, 988, 1270, 1539, 2469
Eam1104I CTCTTC 4 cut(s) 411, 1064, 1343, 2140
EarI CTCTTC 4 cut(s) 411, 1064, 1343, 2140
Ecl136II GAGCTC 2 cut(s) 1042, 1903
Eco130I CCWWGG 5 cut(s) 971, 1168, 1851, 1972, 2085
Eco147I AGGCCT 1 cut(s) 1083
Eco24I GRGCYC 3 cut(s) 1044, 1057, 1905
Eco32I GATATC 1 cut(s) 1594
Eco53kI GAGCTC 2 cut(s) 1042, 1903
Eco57I CTGAAG 6 cut(s) 239, 1088, 1258, 1308, 1356, 2669
Eco88I CYCGRG 4 cut(s) 177, 192, 586, 2426
Eco91I GGTNACC 1 cut(s) 2304
EcoICRI GAGCTC 2 cut(s) 1042, 1903
EcoNI CCTNNNNNAGG 1 cut(s) 2089
EcoO65I GGTNACC 1 cut(s) 2304
EcoRI GAATTC 2 cut(s) 2462, 2669
EcoRII CCWGG 2 cut(s) 326, 1433
EcoRV GATATC 1 cut(s) 1594
EcoT14I CCWWGG 5 cut(s) 971, 1168, 1851, 1972, 2085
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 3 cut(s) 1044, 1057, 1905
ErhI CCWWGG 5 cut(s) 971, 1168, 1851, 1972, 2085
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 9 cut(s) 253, 479, 521, 764, 1306, 1999, 2578, 2662, 2723
FatI CATG 9 cut(s) 249, 475, 517, 760, 1302, 1995, 2574, 2658, 2719
FauI CCCGC 1 cut(s) 630
FauNDI CATATG 2 cut(s) 943, 2238
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 6 cut(s) 433, 1570, 1655, 2007, 2423, 2752
FokI GGATG 7 cut(s) 41, 107, 142, 245, 257, 2381, 2542
FriOI GRGCYC 3 cut(s) 1044, 1057, 1905
Fsp4HI GCNGC 6 cut(s) 433, 1570, 1655, 2007, 2423, 2752
GlaI GCGC 3 cut(s) 685, 1432, 1916
GluI GCNGC 6 cut(s) 433, 1570, 1655, 2007, 2423, 2752
GsaI CCCAGC 1 cut(s) 2117
GsuI CTGGAG 4 cut(s) 44, 405, 1122, 2657
HaeII RGCGCY 1 cut(s) 1434
HaeIII GGCC 5 cut(s) 32, 585, 1055, 1083, 2616
HapII CCGG 3 cut(s) 450, 587, 597
HgaI GACGC 3 cut(s) 847, 1295, 2402
HhaI GCGC 3 cut(s) 686, 1433, 1917
Hin1I GRCGYC 1 cut(s) 2394
Hin1II CATG 9 cut(s) 253, 479, 521, 764, 1306, 1999, 2578, 2662, 2723
Hin6I GCGC 3 cut(s) 684, 1431, 1915
HinP1I GCGC 3 cut(s) 684, 1431, 1915
HincII GTYRAC 2 cut(s) 351, 2437
HindII GTYRAC 2 cut(s) 351, 2437
HindIII AAGCTT 3 cut(s) 663, 2375, 2681
HpaII CCGG 3 cut(s) 450, 587, 597
HphI GGTGA 6 cut(s) 58, 65, 1568, 1867, 2068, 2375
Hpy166II GTNNAC 5 cut(s) 301, 351, 968, 2215, 2437
Hpy8I GTNNAC 5 cut(s) 301, 351, 968, 2215, 2437
Hpy99I CGWCG 1 cut(s) 863
HpyCH4III ACNGT 9 cut(s) 77, 298, 540, 1754, 1813, 1910, 2313, 2705, 2796
HpyCH4IV ACGT 2 cut(s) 1803, 2477
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 143, 597, 1100, 1729, 2566
HpySE526I ACGT 2 cut(s) 1803, 2477
Hsp92I GRCGYC 1 cut(s) 2394
Hsp92II CATG 9 cut(s) 253, 479, 521, 764, 1306, 1999, 2578, 2662, 2723
HspAI GCGC 3 cut(s) 684, 1431, 1915
LguI GCTCTTC 2 cut(s) 411, 1343
LmnI GCTCC 6 cut(s) 424, 514, 920, 1908, 2018, 2546
Lsp1109I GCAGC 4 cut(s) 1666, 2018, 2434, 2763
LweI GCATC 6 cut(s) 223, 391, 856, 1957, 2188, 2359
MaeII ACGT 2 cut(s) 1803, 2477
MaeIII GTNAC 7 cut(s) 1229, 1484, 1634, 1873, 2043, 2304, 2598
MflI RGATCY 6 cut(s) 1237, 1694, 1855, 2125, 2149, 2249
MhlI GDGCHC 4 cut(s) 1044, 1057, 1734, 1905
MlyI GAGTC 8 cut(s) 96, 184, 1184, 1616, 1633, 1795, 2302, 2736
MmeI TCCRAC 3 cut(s) 365, 2211, 2567
Mph1103I ATGCAT 1 cut(s) 871
MroXI GAANNNNTTC 3 cut(s) 623, 1154, 2646
MseI TTAA 8 cut(s) 35, 360, 885, 1775, 1806, 1860, 2079, 2328
MslI CAYNNNNRTG 2 cut(s) 165, 2794
MspA1I CMGCKG 1 cut(s) 1103
MspCI CTTAAG 1 cut(s) 1859
MspI CCGG 3 cut(s) 450, 587, 597
MspR9I CCNGG 5 cut(s) 328, 451, 587, 588, 1435
Mva1269I GAATGC 2 cut(s) 337, 860
MvaI CCWGG 2 cut(s) 328, 1435
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 6 cut(s) 11, 143, 597, 1100, 1729, 2566
NciI CCSGG 3 cut(s) 451, 587, 588
NdeI CATATG 2 cut(s) 943, 2238
NlaIII CATG 9 cut(s) 253, 479, 521, 764, 1306, 1999, 2578, 2662, 2723
NlaIV GGNNCC 5 cut(s) 261, 595, 750, 1055, 2251
NmeAIII GCCGAG 3 cut(s) 1009, 1531, 2727
NmuCI GTSAC 3 cut(s) 1484, 1873, 2043
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 3 cut(s) 1999, 2662, 2723
PaeI GCATGC 1 cut(s) 1999
PaeR7I CTCGAG 3 cut(s) 177, 192, 2426
PceI AGGCCT 1 cut(s) 1083
PciSI GCTCTTC 2 cut(s) 411, 1343
PctI GAATGC 2 cut(s) 337, 860
PdmI GAANNNNTTC 3 cut(s) 623, 1154, 2646
PfeI GAWTC 5 cut(s) 897, 1831, 2317, 2693, 2779
PflMI CCANNNNNTGG 4 cut(s) 117, 214, 1978, 2612
PkrI GCNGC 6 cut(s) 434, 1571, 1656, 2008, 2424, 2753
PleI GAGTC 8 cut(s) 95, 184, 1184, 1615, 1632, 1794, 2301, 2735
PpsI GAGTC 8 cut(s) 95, 184, 1184, 1615, 1632, 1794, 2301, 2735
PshAI GACNNNNGTC 1 cut(s) 1623
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 2 cut(s) 1044, 1905
Psp1406I AACGTT 1 cut(s) 1803
Psp6I CCWGG 2 cut(s) 326, 1433
PspEI GGTNACC 1 cut(s) 2304
PspFI CCCAGC 1 cut(s) 2113
PspGI CCWGG 2 cut(s) 326, 1433
PspN4I GGNNCC 5 cut(s) 261, 595, 750, 1055, 2251
PspOMI GGGCCC 1 cut(s) 1053
PspPI GGNCC 4 cut(s) 584, 1053, 1054, 2615
PspXI VCTCGAGB 3 cut(s) 177, 192, 2426
PstI CTGCAG 1 cut(s) 2008
PsuI RGATCY 6 cut(s) 1237, 1694, 1855, 2125, 2149, 2249
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 7 cut(s) 175, 300, 693, 989, 1271, 1540, 2470
RsaNI GTAC 7 cut(s) 174, 299, 692, 988, 1270, 1539, 2469
RseI CAYNNNNRTG 2 cut(s) 165, 2794
SacI GAGCTC 2 cut(s) 1044, 1905
SalI GTCGAC 1 cut(s) 349
SapI GCTCTTC 2 cut(s) 411, 1343
SaqAI TTAA 8 cut(s) 35, 360, 885, 1775, 1806, 1860, 2079, 2328
SatI GCNGC 6 cut(s) 433, 1570, 1655, 2007, 2423, 2752
Sau96I GGNCC 4 cut(s) 584, 1053, 1054, 2615
SchI GAGTC 8 cut(s) 96, 184, 1184, 1616, 1633, 1795, 2302, 2736
ScrFI CCNGG 5 cut(s) 328, 451, 587, 588, 1435
SduI GDGCHC 4 cut(s) 1044, 1057, 1734, 1905
SfaNI GCATC 6 cut(s) 223, 391, 856, 1957, 2188, 2359
SfcI CTRYAG 2 cut(s) 21, 2004
Sfr274I CTCGAG 3 cut(s) 177, 192, 2426
SlaI CTCGAG 3 cut(s) 177, 192, 2426
SmaI CCCGGG 1 cut(s) 588
SmiMI CAYNNNNRTG 2 cut(s) 165, 2794
SphI GCATGC 1 cut(s) 1999
SrfI GCCCGGGC 1 cut(s) 588
SseBI AGGCCT 1 cut(s) 1083
SsiI CCGC 6 cut(s) 433, 591, 637, 808, 1545, 1570
SspI AATATT 2 cut(s) 1259, 2014
SstI GAGCTC 2 cut(s) 1044, 1905
StuI AGGCCT 1 cut(s) 1083
StyD4I CCNGG 5 cut(s) 326, 449, 585, 586, 1433
StyI CCWWGG 5 cut(s) 971, 1168, 1851, 1972, 2085
TaaI ACNGT 9 cut(s) 77, 298, 540, 1754, 1813, 1910, 2313, 2705, 2796
TaiI ACGT 2 cut(s) 1806, 2480
TatI WGTACW 1 cut(s) 1269
TauI GCSGC 2 cut(s) 435, 1572
TfiI GAWTC 5 cut(s) 897, 1831, 2317, 2693, 2779
Tru1I TTAA 8 cut(s) 35, 360, 885, 1775, 1806, 1860, 2079, 2328
Tru9I TTAA 8 cut(s) 35, 360, 885, 1775, 1806, 1860, 2079, 2328
TscAI CASTG 5 cut(s) 33, 1759, 2640, 2773, 2801
TseFI GTSAC 3 cut(s) 1484, 1873, 2043
TseI GCWGC 4 cut(s) 1654, 2006, 2422, 2751
Tsp45I GTSAC 3 cut(s) 1484, 1873, 2043
TspGWI ACGGA 1 cut(s) 2157
TspMI CCCGGG 1 cut(s) 586
TspRI CASTG 5 cut(s) 33, 1759, 2640, 2773, 2801
Van91I CCANNNNNTGG 4 cut(s) 117, 214, 1978, 2612
Vha464I CTTAAG 1 cut(s) 1859
VspI ATTAAT 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 2089
XbaI TCTAGA 4 cut(s) 1610, 2128, 2269, 2296
XceI RCATGY 3 cut(s) 1999, 2662, 2723
XcmI CCANNNNNNNNNTGG 1 cut(s) 1166
XhoI CTCGAG 3 cut(s) 177, 192, 2426
XmaI CCCGGG 1 cut(s) 586
XmaJI CCTAGG 1 cut(s) 971
XmiI GTMKAC 1 cut(s) 350
XmnI GAANNNNTTC 3 cut(s) 623, 1154, 2646
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.