FvH4_4g11660

Extensin-2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
15363402 .. 15367973
4572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11660.t1

Sequence Viewer

Length: 3396 bp
ATGAGGAGTTCGAGTGGCGACCCCCCCTCTTGGGGTCGTTTTTGGCCTCAAATGGCGGTGGCTTTCGCAGCCATAGTTGTTGTCTTCTCCACTAATGTGGCTTCAGTTCAGGCTGATCATCCTTACTTGTACTCCTCACCCCCTCCTCCTTATGTCTACAGCTCCCCACCGCCCCCTGTTCACTCTCCTCCACCTCCTTATGTCTACAAGTCACCTCCCCCACCATCGCCTTCACCACCTCCTCCTTACGTCTACAAGTCACCTCCCCCACCATCGCCTTCTCCTCCACCACCGTACGTCTACAAGTCTCCTCCACCTCCCTCACCTAAATTGCCTCCGTACGAGTACAAGTCACCACCACCTCCATCACCTTCTCCCCCACCACCATATGTCTACAAATCACCACCTCCACCATCACCTTCTCCTCCACCGCCTTACTACTACAAGTCTCCTCCACCTCCGGTACATTCTCCACCACCACCATACTACTACAAATCTCCTCCACCTCCTGTACATTCACCACCACCACCTTACTACTACAAATCTCCTCCACCCCCAGTACATTCTCCCCCACCACCTTACTATTACAAATCTCCTCCACCCCCAGTACATTCTCCACCACCACCTTACTACTATAAGTCTCCTCCTCCTCCTTCTCCCTCACCACCACCACCATACTACTACAAATCCCCTCCTCCACCTTCCCCAACTCCTCATGCACCATACTACTACAAGTCTCCTCCACCGCCGTCACCAAAACCTTACATGTACAAGTCTCCTCCACCACCATCCCCAAAACCTTACATGTATAAGTCTCCTCCACCACCATCACCAAAGCCTTACATGTATAAGTCTCCTCCACCACCATCCCCAAAGCCTTACGTGTACAAGTCTCCCCCGCCACCGTCACCAAAGCCGTACGTCTACAAGTCTCCACCACCACCCTCTCCCAAACCGTACGTGTACAAGTCTCCACCACCACCATCGCCAAAGCCTTACTACTACCAGTCTCCTCCTCCACCGGCTCCTTACTATCCTCACCCATACCCACACCCACACCACCACCCATTGATCGTCAAGGTCGTCGGAAAGGTCTACTGCTACAGATGCTACGACTGGGGATATCCAATCAAGTCCCACGACAAGAAACACCTCAAAGGTGCTGTTGTTGAGATCACATGCTGGGCAGGCAAGAAGGAGGTCAAGGCCTACGGTAAAACAAAGAACAATGGTAAATTCAGCATCGCAGTCGAAGACTTTGACTACGGTAAATATGGTGCCAAGGCATGTACCGCGAAGCTCCACATGGCACCCGAGGGTTCCTTGTGCAGCATTCCAACTCCGCTCAATTGGGGCAACAAGGGTGCCAAGCTGAAGGTCAAGTCCAAGAACAAGTGGGAGGTTGTGCTCAAGGCCAAGCCATTTGCTTTTGCTCCCAAGACTGCTTACAAGGAGTGTGCCAAGCACGCGCCACACCATCCTTCTCCCTACGTCTACAAGTCGCCGCCTCCGCCAACCCCGACTTACGTCTACAAGTCTCCTCCTCCACCAACTCCGACTTACGTCTACAAGTCTCCTCCTCCACCGTCGCCTAAGTACGTTTACAAGTCACCGCCATCACCGGCCTACTACTACAAGTCACCACCACCGCCATCTCCAAAGCCGTACGTGTACAAGTCACCACCACCGCCATCTCCAAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCGAAGCCGTATGTCTACAAGTCTCCTCCTCCACCGTCGCCTAAGTACGTTTACAAATCACCGCCACCACCGACCTACTACTACAAGTCACCACCACCGCCATCTCCAAAGCCGTACGTGTACAAGTCACCACCACCGCCATCTCCAAAGCCGTACGTGTACAAGTCTCCACCACCACCATCCCCAAAGCCGTACGTATACAAGTCTCCACCACCACCATCTCCGAAGCCGTACGTCTACAAGTCTCCTCCTCCACCGTCGCCTAAGTACGTTTACAAGTCACCACCACCACCACCGGCCTACTACTACAAGTCACCACCACCGCCATCTCCAAAGCCGTATGTGTACAAGTCACCACCACCGCCATCTCCAAAGCCGTACGTGTATAAGTCTCCACCACCACCATCCCCGAAGCCGTACGTCTACAAGTCTCCTCCTCCACCATCCCCAAAGCCGTACGTCTACAAGTCACCACCACCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCACCACCCCCATCTCCGAAGCCGTATGTATACAAGTCTCCACCACCACCATCCCCAAAACCGTACGTCTACAAGTCACCACCACCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCACCACCACCATCTCCCAAGCCATACGTGTACAAGTCTCCACCGCCACCATCGCCAAAGCCGTACGTGTACAAGTCTCCACCACCACCGACTTACATCTACAAGTCACCACCACCACCAGCATACATCTACAAGTCTCCACCACCACCACCACCAAAGTACTACTACAAGTCTCCACCACCACCTACTTACATCTACAAGTCACCACCACCACCAGCATACATCTACAAGTCACCACCACCACCACATTCTCACCCTCACCCACCTTACGTTTACAAGTCACCACCACCACCTTCACCATCTCCTCCTCCTCCATACTACTACAAGTCCCCACCACCACCATCCCCATCACCACCACCGCCATACTACTACAAGTCTCCTCCACCTCCAGTGCATCCTCCACCCCCACCATACTACTACAAATCTCCTCCACCTCCAGTACATTCTCCACCACCACCATACTACTACAAATCTCCCCCTCCTCCCTCACCATCTCCTCCACCACCATATGTCTACAAATCTCCACCACCACCCTCTCCGTCTCCTCCTCCACCATATCACTACAACTCCCCACCTCCACCACACAAGCACCCCACACCTCCCTATCATTACACCTCTCCCCCTCCACCATCTCCATCTCCCCCTCCACCATACCACTACACTTCCCCGCCACCACCTTCCCCATCTCCTCCACCACCATACCACTACACCTCCCCACCACCACCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCTCCACACAAGGAACCAAAGCCAACACCGCCCTACCACTACACATCTCCACCACCACCGTCGCCATCTCCTCCTCCACCATACCACTACACCTCCCCACCTCCACCTTCTCCATCTCCTCCCCCACCATACGCTTACAAGTCTCCACCACCTCCTTCACCCTCTCCTCCTCCTCCATACGTCTACAAGTCACCTCCACCTCCGGTGAAATCTCCTCCACCACCGGTGTACATTTACGCCTCTCCCCCACCTCCCACTCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1132

Amino Acids

125.3

Weight (kDa)

9.74

Isoelectric Point (pI)

130.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_2 PF04554 38 - 75 4.5e-07 Extensin-like region
Pollen_Ole_e_1 PF01190 361 - 455 1e-15 Pollen protein Ole e 1 like
Extensin_2 PF04554 793 - 837 1e-05 Extensin-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 1277, 1309, 1364
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 2 cut(s) 1295, 1469
AcsI RAATTY 1 cut(s) 1235
AcuI CTGAAG 2 cut(s) 87, 1394
AfiI CCNNNNNNNGG 3 cut(s) 30, 31, 32
AgeI ACCGGT 1 cut(s) 3352
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 3 cut(s) 162, 1300, 1372
AluI AGCT 3 cut(s) 162, 1300, 1372
Alw21I GWGCWC 1 cut(s) 1410
Ama87I CYCGRG 1 cut(s) 1313
AoxI GGCC 5 cut(s) 44, 1206, 1413, 1623, 2031
ApeKI GCWGC 2 cut(s) 68, 1329
ApoI RAATTY 1 cut(s) 1235
AsiGI ACCGGT 1 cut(s) 3352
AspLEI GCGC 1 cut(s) 1471
AvaI CYCGRG 1 cut(s) 1313
BanI GGYRCC 3 cut(s) 1277, 1309, 1364
BbsI GAAGAC 2 cut(s) 76, 1260
Bbv12I GWGCWC 1 cut(s) 1410
BbvI GCAGC 2 cut(s) 80, 1341
BcgI CGANNNNNNTGC 2 cut(s) 1231, 1265
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 3394
BfmI CTRYAG 2 cut(s) 157, 1102
BisI GCNGC 3 cut(s) 69, 1330, 1505
BlsI GCNGC 3 cut(s) 70, 1331, 1506
BmcAI AGTACT 1 cut(s) 2522
BmeT110I CYCGRG 1 cut(s) 1313
BmiI GGNNCC 6 cut(s) 1026, 1279, 1311, 1321, 1366, 3144
BmrI ACTGGG 3 cut(s) 551, 599, 1126
BmsI GCATC 3 cut(s) 1097, 1251, 2764
BmuI ACTGGG 3 cut(s) 551, 599, 1126
BoxI GACNNNNGTC 2 cut(s) 1526, 1562
BpiI GAAGAC 2 cut(s) 76, 1260
BpmI CTGGAG 2 cut(s) 2733, 2781
BpuEI CTTGAG 1 cut(s) 1394
BsaJI CCNNGG 2 cut(s) 1281, 1314
BsaWI WCCGGW 3 cut(s) 460, 3331, 3352
BsaXI ACNNNNNCTCC 9 cut(s) 28, 116, 146, 2912, 2942, 3056, 3086, 3206, 3236
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 31, 32
Bse118I RCCGGY 4 cut(s) 1021, 1621, 2029, 3352
Bse1I ACTGG 6 cut(s) 557, 605, 1006, 1121, 2750, 2798
BseDI CCNNGG 2 cut(s) 1281, 1314
BseLI CCNNNNNNNGG 3 cut(s) 30, 31, 32
BseNI ACTGG 6 cut(s) 557, 605, 1006, 1121, 2750, 2798
BseXI GCAGC 2 cut(s) 80, 1341
BseYI CCCAGC 1 cut(s) 1182
BsgI GTGCAG 1 cut(s) 1348
Bsh1236I CGCG 2 cut(s) 1295, 1469
BshFI GGCC 5 cut(s) 46, 1208, 1415, 1625, 2033
BshNI GGYRCC 3 cut(s) 1277, 1309, 1364
BshTI ACCGGT 1 cut(s) 3352
BsiHKAI GWGCWC 1 cut(s) 1410
BsiHKCI CYCGRG 1 cut(s) 1313
BsiSI CCGG 6 cut(s) 461, 1022, 1622, 2030, 3332, 3353
BslFI GGGAC 2 cut(s) 1120, 2674
BslI CCNNNNNNNGG 3 cut(s) 30, 31, 32
BsmBI CGTCTC 1 cut(s) 2907
BsmFI GGGAC 2 cut(s) 1120, 2674
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 5 cut(s) 46, 1208, 1415, 1625, 2033
BsoBI CYCGRG 1 cut(s) 1313
Bsp1286I GDGCHC 1 cut(s) 1410
Bsp143I GATC 3 cut(s) 115, 1071, 1173
BspANI GGCC 5 cut(s) 46, 1208, 1415, 1625, 2033
BspFNI CGCG 2 cut(s) 1295, 1469
BspLI GGNNCC 6 cut(s) 1026, 1279, 1311, 1321, 1366, 3144
BspT107I GGYRCC 3 cut(s) 1277, 1309, 1364
BsrBI CCGCTC 1 cut(s) 1345
BsrFI RCCGGY 4 cut(s) 1021, 1621, 2029, 3352
BsrI ACTGG 6 cut(s) 557, 605, 1006, 1121, 2750, 2798
BssAI RCCGGY 4 cut(s) 1021, 1621, 2029, 3352
BssECI CCNNGG 2 cut(s) 1281, 1314
BssMI GATC 3 cut(s) 115, 1071, 1173
BssNAI GTATAC 2 cut(s) 1933, 2275
BssT1I CCWWGG 1 cut(s) 1281
Bst1107I GTATAC 2 cut(s) 1933, 2275
BstC8I GCNNGC 2 cut(s) 1189, 1467
BstDEI CTNAG 3 cut(s) 1593, 1776, 1998
BstFNI CGCG 2 cut(s) 1295, 1469
BstHHI GCGC 1 cut(s) 1471
BstKTI GATC 3 cut(s) 118, 1074, 1176
BstMBI GATC 3 cut(s) 115, 1071, 1173
BstMWI GCNNNNNNNGC 8 cut(s) 68, 1107, 1188, 1292, 1466, 1510, 2413, 3157
BstNSI RCATGY 5 cut(s) 769, 808, 847, 1182, 1290
BstPAI GACNNNNGTC 2 cut(s) 1526, 1562
BstSFI CTRYAG 2 cut(s) 157, 1102
BstSNI TACGTA 1 cut(s) 1930
BstUI CGCG 2 cut(s) 1295, 1469
BstV1I GCAGC 2 cut(s) 80, 1341
BstV2I GAAGAC 2 cut(s) 76, 1260
BstXI CCANNNNNNTGG 1 cut(s) 97
BstZ17I GTATAC 2 cut(s) 1933, 2275
BsuRI GGCC 5 cut(s) 46, 1208, 1415, 1625, 2033
BtgZI GCGATG 5 cut(s) 210, 258, 969, 1228, 2397
BtsIMutI CAGTG 1 cut(s) 2757
Cac8I GCNNGC 2 cut(s) 1189, 1467
CfoI GCGC 1 cut(s) 1471
Cfr10I RCCGGY 4 cut(s) 1021, 1621, 2029, 3352
CspAI ACCGGT 1 cut(s) 3352
CviAII CATG 7 cut(s) 716, 766, 805, 844, 1179, 1287, 1306
DdeI CTNAG 3 cut(s) 1593, 1776, 1998
DpnI GATC 3 cut(s) 117, 1073, 1175
DpnII GATC 3 cut(s) 115, 1071, 1173
EciI GGCGGA 1 cut(s) 1500
Eco105I TACGTA 1 cut(s) 1930
Eco130I CCWWGG 1 cut(s) 1281
Eco147I AGGCCT 1 cut(s) 1208
Eco32I GATATC 1 cut(s) 1124
Eco57I CTGAAG 2 cut(s) 87, 1394
Eco88I CYCGRG 1 cut(s) 1313
EcoRV GATATC 1 cut(s) 1124
EcoT14I CCWWGG 1 cut(s) 1281
ErhI CCWWGG 1 cut(s) 1281
Esp3I CGTCTC 1 cut(s) 2907
FaeI CATG 7 cut(s) 719, 769, 808, 847, 1182, 1290, 1309
FaqI GGGAC 2 cut(s) 1120, 2674
FatI CATG 7 cut(s) 715, 765, 804, 843, 1178, 1286, 1305
FauI CCCGC 2 cut(s) 906, 3036
FauNDI CATATG 2 cut(s) 388, 2869
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 69, 1330, 1505
Fsp4HI GCNGC 3 cut(s) 69, 1330, 1505
FspBI CTAG 1 cut(s) 3394
GlaI GCGC 1 cut(s) 1470
GluI GCNGC 3 cut(s) 69, 1330, 1505
GsaI CCCAGC 1 cut(s) 1186
GsuI CTGGAG 2 cut(s) 2733, 2781
HaeIII GGCC 5 cut(s) 46, 1208, 1415, 1625, 2033
HapII CCGG 6 cut(s) 461, 1022, 1622, 2030, 3332, 3353
HhaI GCGC 1 cut(s) 1471
Hin1II CATG 7 cut(s) 719, 769, 808, 847, 1182, 1290, 1309
Hin6I GCGC 1 cut(s) 1469
HinP1I GCGC 1 cut(s) 1469
HpaII CCGG 6 cut(s) 461, 1022, 1622, 2030, 3332, 3353
Hpy188I TCNGA 5 cut(s) 1088, 1557, 1737, 1959, 2262
Hpy99I CGWCG 5 cut(s) 1088, 1591, 1774, 1996, 3193
HpyCH4V TGCA 3 cut(s) 719, 1329, 2755
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 1107, 1188, 1292, 1466, 1510, 2413, 3157
HpyF3I CTNAG 3 cut(s) 1593, 1776, 1998
Hsp92II CATG 7 cut(s) 719, 769, 808, 847, 1182, 1290, 1309
HspAI GCGC 1 cut(s) 1469
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 1071, 1173
LmnI GCTCC 4 cut(s) 167, 1030, 1305, 1438
Lsp1109I GCAGC 2 cut(s) 80, 1341
LweI GCATC 3 cut(s) 1097, 1251, 2764
MaeI CTAG 1 cut(s) 3394
MalI GATC 3 cut(s) 117, 1073, 1175
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 3 cut(s) 115, 1071, 1173
MboII GAAGA 2 cut(s) 76, 1265
MfeI CAATTG 1 cut(s) 1348
MhlI GDGCHC 1 cut(s) 1410
MluCI AATT 3 cut(s) 329, 1235, 1348
MmeI TCCRAC 3 cut(s) 1066, 1361, 1580
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 6 cut(s) 461, 1022, 1622, 2030, 3332, 3353
MunI CAATTG 1 cut(s) 1348
Mva1269I GAATGC 1 cut(s) 1332
MvnI CGCG 2 cut(s) 1295, 1469
MwoI GCNNNNNNNGC 8 cut(s) 68, 1107, 1188, 1292, 1466, 1510, 2413, 3157
NdeI CATATG 2 cut(s) 388, 2869
NdeII GATC 3 cut(s) 115, 1071, 1173
NlaIII CATG 7 cut(s) 719, 769, 808, 847, 1182, 1290, 1309
NlaIV GGNNCC 6 cut(s) 1026, 1279, 1311, 1321, 1366, 3144
NspI RCATGY 5 cut(s) 769, 808, 847, 1182, 1290
OliI CACNNNNGTG 1 cut(s) 95
PceI AGGCCT 1 cut(s) 1208
PciI ACATGT 3 cut(s) 765, 804, 843
PcsI WCGNNNNNNNCGW 2 cut(s) 1080, 2420
PctI GAATGC 1 cut(s) 1332
PinAI ACCGGT 1 cut(s) 3352
PkrI GCNGC 3 cut(s) 70, 1331, 1506
PscI ACATGT 3 cut(s) 765, 804, 843
PshAI GACNNNNGTC 2 cut(s) 1526, 1562
PspFI CCCAGC 1 cut(s) 1182
PspN4I GGNNCC 6 cut(s) 1026, 1279, 1311, 1321, 1366, 3144
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 3 cut(s) 69, 1330, 1505
Sau3AI GATC 3 cut(s) 115, 1071, 1173
ScaI AGTACT 1 cut(s) 2522
SduI GDGCHC 1 cut(s) 1410
SfaNI GCATC 3 cut(s) 1097, 1251, 2764
SfcI CTRYAG 2 cut(s) 157, 1102
SgrAI CRCCGGYG 1 cut(s) 3352
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 1409
SmoI CTYRAG 1 cut(s) 1409
SnaBI TACGTA 1 cut(s) 1930
Sse9I AATT 3 cut(s) 329, 1235, 1348
SseBI AGGCCT 1 cut(s) 1208
SspMI CTAG 1 cut(s) 3394
StuI AGGCCT 1 cut(s) 1208
StyI CCWWGG 1 cut(s) 1281
TaqI TCGA 2 cut(s) 11, 1251
TasI AATT 3 cut(s) 329, 1235, 1348
TauI GCSGC 1 cut(s) 1507
TscAI CASTG 1 cut(s) 2757
TseI GCWGC 2 cut(s) 68, 1329
TspGWI ACGGA 2 cut(s) 327, 2889
TspRI CASTG 1 cut(s) 2757
XapI RAATTY 1 cut(s) 1235
XceI RCATGY 5 cut(s) 769, 808, 847, 1182, 1290
XspI CTAG 1 cut(s) 3394
ZrmI AGTACT 1 cut(s) 2522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.