RLG00000004877

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
63277188 .. 63278924
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004877

Sequence Viewer

Length: 744 bp
ATGCAGCCAGTCAAACCTTTCTTCCTCAGAAATCAATCTCATCTCACCTGTGATGATGATATTTCAGTAGTAACATGTTCACGCAGCAAGTTCAACTGGAAATTAAAGGCTGTAATAGTATCAAAATCCCAAATTGGAGTAAATTCAGTCTATGTTAATTGCAACCTCAGTATAATCTTTCTTCTTCTCTTGAGTAAGGAAATCACCAATGAAGATGCCGAGGCCATCATTCAGAACACTGGGCCTCTAGCAGTAAAAAGATACAAATTTTCGGATGTAAGGAAAATGACCGACTCATTTAAAGATAACTGGGCCAAGGCGGTTATGGTGATGTGTACGAAGGTACTTAAAGAATCCAAAGGGAATGGAGAGGACTTTGTCAATGAGGTAATTGCAAGCATTAGTAGAACTTCCCATGTTAATGTGGTCACTCTTTTGGGGTATTGCTTTGAAGGTAAGAAAAAAGCGCTCATATATGAGTTCATGCCCAATGGATCACTTGGGAAGTTCATATACAAAGACAGTAATCCTTTGAAAACCACTCCACACTTGGAATTGGAAAGACTCCTTCAAATTGCTACAGGGATAGCTCGAGGGCTCGAGTGCTTGCACCGTGGGTGCAACACACGAATCTTGCACTTTGACATTAAACCACATAACATCCTTTTGGATGAAAATTTTTGCCCAAAGATTTCTGACTTTGGTCTTTCTAAACTTTGTACGAGGAAGGAGAGTATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

248

Amino Acids

27.91

Weight (kDa)

9.08

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 107 - 243 1e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 110 - 244 5.8e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 3 cut(s) 142, 266, 676
AfaI GTAC 3 cut(s) 337, 345, 721
AfeI AGCGCT 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 4 cut(s) 94, 452, 535, 572
AluBI AGCT 1 cut(s) 590
AluI AGCT 1 cut(s) 590
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 2 cut(s) 591, 599
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 3 cut(s) 222, 242, 312
ApeKI GCWGC 2 cut(s) 4, 84
ApoI RAATTY 3 cut(s) 142, 266, 676
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 242, 312
AsuHPI GGTGA 3 cut(s) 37, 196, 340
AvaI CYCGRG 2 cut(s) 591, 599
BanII GRGCYC 1 cut(s) 600
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbvI GCAGC 2 cut(s) 16, 96
BccI CCATC 1 cut(s) 233
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 579
BfoI RGCGCY 1 cut(s) 470
BisI GCNGC 2 cut(s) 5, 85
BlsI GCNGC 2 cut(s) 6, 86
BmeT110I CYCGRG 2 cut(s) 591, 599
BmgT120I GGNCC 2 cut(s) 242, 312
BmrI ACTGGG 2 cut(s) 249, 319
BmsI GCATC 1 cut(s) 205
BmuI ACTGGG 2 cut(s) 249, 319
BoxI GACNNNNGTC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 219, 315, 613
Bse1I ACTGG 4 cut(s) 8, 101, 244, 314
BseDI CCNNGG 3 cut(s) 219, 315, 613
BseGI GGATG 3 cut(s) 280, 660, 676
BseMII CTCAG 2 cut(s) 40, 181
BseNI ACTGG 4 cut(s) 8, 101, 244, 314
BseXI GCAGC 2 cut(s) 16, 96
BshFI GGCC 3 cut(s) 224, 244, 314
BsiHKCI CYCGRG 2 cut(s) 591, 599
BsnI GGCC 3 cut(s) 224, 244, 314
BsoBI CYCGRG 2 cut(s) 591, 599
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 1 cut(s) 494
BspACI CCGC 1 cut(s) 320
BspANI GGCC 3 cut(s) 224, 244, 314
BspCNI CTCAG 2 cut(s) 39, 180
BspPI GGATC 1 cut(s) 502
BsrI ACTGG 4 cut(s) 8, 101, 244, 314
BssECI CCNNGG 3 cut(s) 219, 315, 613
BssMI GATC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 524, 614
BstC8I GCNNGC 2 cut(s) 397, 608
BstDEI CTNAG 2 cut(s) 26, 167
BstDSI CCRYGG 1 cut(s) 613
BstF5I GGATG 3 cut(s) 280, 660, 676
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 1 cut(s) 497
BstMBI GATC 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 78
BstPAI GACNNNNGTC 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 16, 96
BsuRI GGCC 3 cut(s) 224, 244, 314
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 3 cut(s) 280, 660, 676
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 397, 608
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 242, 312
Csp6I GTAC 3 cut(s) 336, 344, 720
CviAII CATG 3 cut(s) 75, 416, 484
CviJI RGCY 7 cut(s) 7, 110, 224, 244, 314, 590, 598
CviKI_1 RGCY 7 cut(s) 7, 110, 224, 244, 314, 590, 598
CviQI GTAC 3 cut(s) 336, 344, 720
DdeI CTNAG 2 cut(s) 26, 167
DpnI GATC 1 cut(s) 496
DpnII GATC 1 cut(s) 494
DraI TTTAAA 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 600
Eco47III AGCGCT 1 cut(s) 468
Eco88I CYCGRG 2 cut(s) 591, 599
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 78, 419, 487
FatI CATG 3 cut(s) 74, 415, 483
Fnu4HI GCNGC 2 cut(s) 5, 85
FokI GGATG 3 cut(s) 287, 647, 683
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 2 cut(s) 5, 85
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 5, 85
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 224, 244, 314
HhaI GCGC 1 cut(s) 469
Hin1II CATG 3 cut(s) 78, 419, 487
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HinfI GANTC 4 cut(s) 293, 353, 564, 630
HphI GGTGA 3 cut(s) 37, 196, 340
Hpy166II GTNNAC 2 cut(s) 80, 336
Hpy188I TCNGA 4 cut(s) 29, 234, 274, 697
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 80, 336
HpyAV CCTTC 4 cut(s) 334, 446, 578, 721
HpyCH4III ACNGT 2 cut(s) 524, 614
HpyCH4V TGCA 6 cut(s) 4, 162, 395, 610, 621, 637
HpyF3I CTNAG 2 cut(s) 26, 167
Hsp92II CATG 3 cut(s) 78, 419, 487
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 1 cut(s) 494
LpnPI CCDG 6 cut(s) 21, 61, 82, 225, 295, 567
Lsp1109I GCAGC 2 cut(s) 16, 96
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 70, 427
MalI GATC 1 cut(s) 496
MboI GATC 1 cut(s) 494
MboII GAAGA 4 cut(s) 13, 173, 176, 224
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 9 cut(s) 101, 132, 142, 157, 266, 390, 554, 573, 676
MlyI GAGTC 2 cut(s) 287, 558
MnlI CCTC 8 cut(s) 35, 176, 214, 255, 364, 379, 587, 717
MseI TTAA 6 cut(s) 104, 156, 300, 348, 420, 648
MslI CAYNNNNRTG 1 cut(s) 420
NdeII GATC 1 cut(s) 494
NlaIII CATG 3 cut(s) 78, 419, 487
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 78
PaeR7I CTCGAG 2 cut(s) 591, 599
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 2 cut(s) 353, 630
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 6, 86
PleI GAGTC 2 cut(s) 287, 558
PpsI GAGTC 2 cut(s) 287, 558
PscI ACATGT 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 702
PspPI GGNCC 2 cut(s) 242, 312
PspXI VCTCGAGB 2 cut(s) 591, 599
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 3 cut(s) 337, 345, 721
RsaNI GTAC 3 cut(s) 336, 344, 720
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 6 cut(s) 104, 156, 300, 348, 420, 648
SatI GCNGC 2 cut(s) 5, 85
Sau3AI GATC 1 cut(s) 494
Sau96I GGNCC 2 cut(s) 242, 312
SchI GAGTC 2 cut(s) 287, 558
SduI GDGCHC 1 cut(s) 600
SetI ASST 7 cut(s) 19, 50, 168, 345, 390, 457, 592
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 2 cut(s) 591, 599
SlaI CTCGAG 2 cut(s) 591, 599
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 3 cut(s) 190, 591, 599
SmoI CTYRAG 3 cut(s) 190, 591, 599
Sse9I AATT 9 cut(s) 101, 132, 142, 157, 266, 390, 554, 573, 676
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 524, 614
TaqI TCGA 2 cut(s) 592, 600
TaqII GACCGA 1 cut(s) 305
TasI AATT 9 cut(s) 101, 132, 142, 157, 266, 390, 554, 573, 676
TfiI GAWTC 2 cut(s) 353, 630
Tru1I TTAA 6 cut(s) 104, 156, 300, 348, 420, 648
Tru9I TTAA 6 cut(s) 104, 156, 300, 348, 420, 648
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 4, 84
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 4 cut(s) 225, 472, 499, 687
TspRI CASTG 1 cut(s) 244
Tth111I GACNNNGTC 1 cut(s) 377
XapI RAATTY 3 cut(s) 142, 266, 676
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 547
XhoI CTCGAG 2 cut(s) 591, 599
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.