Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

28443756 .. 28445016

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGGCATCCGGGCGGTTTGGCTCGACGATGGCAAGCCGATGTTGGTGGAATCAATATTTTTGATGGAGGAATTGTCGTGCTTTGGCTGCGAGCGTTGAGTCATGGTGGCCGCAAAGACCCAGATTGGGTGGCAACTTGGTTGAGAAAGAAAGTGGTGCAGAAGAGTGACAACGGTGTAGGAGGACCCTGGCTGAGGATGACGGCTGAGATAGGTGACGATGCTGCGCTGGGCATCGACCCCGAATCCGAGGTGAGACGAGGCTGGGTGACCAGAGCATTTGAGCAGCCCAATACCTGTAGGGGAATCAAGGGTGCAACTTATGGTTGGGCTATGAATTTGAGTTCTGTCATCAAGAACATTGATACAATGAGTCACCCTAGGGGAAGTTTGTATCAGATGCCTTATGGTACGGCGGGGAATGGTAAGAATACCAAAAATGACATTGACTCATGTGAGAAGACTACAAACAAGAGCCACGAGACCAACCTGATGCCGAGGTTGTTGGCTACTGAAGAGGCTGAGGGCGGTGCTGGTTCCAACCCTAAGGGGAAGGAATTGGTACTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.74

Weight (kDa)

8.91

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	15, 112, 416, 528
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	412, 564
AfiI	CCNNNNNNNGG	2 cut(s)	127, 195
AjnI	CCWGG	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	250, 476
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	88, 224, 286
ApoI	RAATTY	1 cut(s)	337
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	4 cut(s)	227, 265, 280, 368
AvaII	GGWCC	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	546
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	467
BbvCI	CCTCAGC	2 cut(s)	194, 522
BbvI	GCAGC	3 cut(s)	75, 211, 298
BccI	CCATC	2 cut(s)	24, 59
BceAI	ACGGC	2 cut(s)	219, 429
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	250, 476
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	4 cut(s)	89, 112, 225, 287
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	4 cut(s)	90, 113, 226, 288
Bme1390I	CCNGG	2 cut(s)	12, 190
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	187, 538
BmrFI	CCNGG	2 cut(s)	12, 190
BmsI	GCATC	5 cut(s)	16, 211, 243, 390, 483
BpiI	GAAGAC	1 cut(s)	467
Bpu10I	CCTNAGC	2 cut(s)	194, 522
BpuMI	CCSGG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	4 cut(s)	188, 249, 380, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 195
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	4 cut(s)	188, 249, 380, 497
BseGI	GGATG	2 cut(s)	7, 204
BseLI	CCNNNNNNNGG	2 cut(s)	127, 195
BseMII	CTCAG	3 cut(s)	185, 198, 513
BseXI	GCAGC	3 cut(s)	75, 211, 298
BseYI	CCCAGC	2 cut(s)	229, 264
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	127, 195
BsmAI	GTCTC	2 cut(s)	250, 476
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	476
BspACI	CCGC	4 cut(s)	15, 112, 416, 528
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	186, 199, 514
BspLI	GGNNCC	2 cut(s)	187, 538
BspTNI	GGTCTC	1 cut(s)	476
BssECI	CCNNGG	4 cut(s)	188, 249, 380, 497
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	158, 510
BstC8I	GCNNGC	2 cut(s)	36, 93
BstDEI	CTNAG	4 cut(s)	194, 207, 522, 546
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	7, 204
BstHHI	GCGC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	250, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	10, 188
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	75, 211, 298
BstV2I	GAAGAC	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	7, 204
Cac8I	GCNNGC	2 cut(s)	36, 93
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	411, 563
CviAII	CATG	2 cut(s)	104, 453
CviQI	GTAC	2 cut(s)	411, 563
DdeI	CTNAG	4 cut(s)	194, 207, 522, 546
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	158, 510
EarI	CTCTTC	2 cut(s)	158, 510
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	107, 456
FaiI	YATR	5 cut(s)	105, 324, 335, 408, 454
FatI	CATG	2 cut(s)	103, 452
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	89, 112, 225, 287
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	4 cut(s)	89, 112, 225, 287
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	89, 112, 225, 287
GsaI	CCCAGC	2 cut(s)	233, 268
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	107, 456
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	6 cut(s)	51, 100, 245, 306, 373, 449
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	4 cut(s)	227, 265, 280, 368
Hpy188I	TCNGA	2 cut(s)	250, 399
Hpy188III	TCNNGA	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	160, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	4 cut(s)	194, 207, 522, 546
Hsp92II	CATG	2 cut(s)	107, 456
HspAI	GCGC	1 cut(s)	227
Lsp1109I	GCAGC	3 cut(s)	75, 211, 298
LweI	GCATC	5 cut(s)	16, 211, 243, 390, 483
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	167, 215, 268, 374
MboII	GAAGA	3 cut(s)	175, 472, 527
MluCI	AATT	3 cut(s)	72, 337, 557
MlyI	GAGTC	3 cut(s)	109, 382, 443
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	8 cut(s)	62, 176, 189, 244, 254, 492, 511, 517
MseI	TTAA	1 cut(s)	571
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	12, 190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	12
NlaIII	CATG	2 cut(s)	107, 456
NlaIV	GGNNCC	2 cut(s)	187, 538
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	4 cut(s)	167, 215, 268, 374
PfeI	GAWTC	3 cut(s)	51, 245, 306
PkrI	GCNGC	4 cut(s)	90, 113, 226, 288
PleI	GAGTC	3 cut(s)	108, 381, 443
PpsI	GAGTC	3 cut(s)	108, 381, 443
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	229, 264
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	187, 538
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
RsaI	GTAC	2 cut(s)	412, 564
RsaNI	GTAC	2 cut(s)	411, 563
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	4 cut(s)	89, 112, 225, 287
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	3 cut(s)	109, 382, 443
ScrFI	CCNGG	2 cut(s)	12, 190
SetI	ASST	5 cut(s)	217, 255, 299, 492, 503
SfaNI	GCATC	5 cut(s)	16, 211, 243, 390, 483
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	3 cut(s)	72, 337, 557
SsiI	CCGC	4 cut(s)	15, 112, 416, 528
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	10, 188
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	25, 237
TasI	AATT	3 cut(s)	72, 337, 557
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	51, 245, 306
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TseFI	GTSAC	4 cut(s)	167, 215, 268, 374
TseI	GCWGC	3 cut(s)	88, 224, 286
Tsp45I	GTSAC	4 cut(s)	167, 215, 268, 374
TspDTI	ATGAA	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	337
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.