RLG00000023311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001240
Physical Location & Seq
Forward (+)
21705469 .. 21705931
463 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023311

Sequence Viewer

Length: 378 bp
ATGCCTCTCCCCCGTGGAACCCTAGCAGCGCCGACTAGAGGTGCAGAGCATGAAGACGGCGGTCCTTGCCACCCTTATACAGAGCGCCAGACTCGCTCCGGCGTCAGCTTTCTCCCTTTGGTCTTTTTATGGCTGGTCTTGGCTTCAATTCTAATTGGACCTATCCGATCTCTTATCCTGAGGGAGAAGGATTTTGCTGATGAATGCCTGGCCTTTTGGGATGACGATGGTGGGACGACATATGCTATTTCAATGTGGCGTCCCGGCGATTTGGCTCGACGGCGGAGTGTTGATTTTGGATGGATTCTGGCTGAGGAAGCAAGCAGTGTGGAAGATCGCCGGCGTTGCTGGAGGAACCTGGCTGAGGATGGCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.03

Weight (kDa)

5.15

Isoelectric Point (pI)

75.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 60, 283, 372
AcyI GRCGYC 2 cut(s) 102, 259
AfiI CCNNNNNNNGG 2 cut(s) 38, 364
AgsI TTSAA 2 cut(s) 147, 252
AjnI CCWGG 2 cut(s) 207, 357
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 2 cut(s) 31, 87
AspS9I GGNCC 2 cut(s) 62, 158
AsuC2I CCSGG 1 cut(s) 264
AvaII GGWCC 2 cut(s) 62, 158
AxyI CCTNAGG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 2 cut(s) 312, 363
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 221, 294, 362
BceAI ACGGC 2 cut(s) 73, 296
BciT130I CCWGG 2 cut(s) 209, 359
BcnI CCSGG 1 cut(s) 264
BfaI CTAG 2 cut(s) 23, 36
BfoI RGCGCY 2 cut(s) 32, 88
BisI GCNGC 2 cut(s) 27, 373
BlsI GCNGC 2 cut(s) 28, 374
Bme1390I CCNGG 3 cut(s) 209, 264, 359
Bme18I GGWCC 2 cut(s) 62, 158
BmgT120I GGNCC 2 cut(s) 62, 158
BmiI GGNNCC 2 cut(s) 19, 356
BmrFI CCNGG 3 cut(s) 209, 264, 359
BoxI GACNNNNGTC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 2 cut(s) 312, 363
BpuMI CCSGG 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 102, 259
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 364
Bse118I RCCGGY 1 cut(s) 339
Bse21I CCTNAGG 1 cut(s) 179
BseBI CCWGG 2 cut(s) 209, 359
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 3 cut(s) 226, 305, 373
BseLI CCNNNNNNNGG 2 cut(s) 38, 364
BseMII CTCAG 3 cut(s) 170, 303, 354
BseXI GCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 212
BsiSI CCGG 3 cut(s) 99, 264, 340
BslFI GGGAC 2 cut(s) 246, 247
BslI CCNNNNNNNGG 2 cut(s) 38, 364
BsmFI GGGAC 2 cut(s) 246, 247
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 167, 334
BspACI CCGC 3 cut(s) 60, 283, 372
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 3 cut(s) 171, 304, 355
BspLI GGNNCC 2 cut(s) 19, 356
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 167, 334
BssNI GRCGYC 2 cut(s) 102, 259
Bst2UI CCWGG 2 cut(s) 209, 359
BstACI GRCGYC 2 cut(s) 102, 259
BstC8I GCNNGC 2 cut(s) 322, 341
BstDEI CTNAG 3 cut(s) 179, 312, 363
BstDSI CCRYGG 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 226, 305, 373
BstH2I RGCGCY 2 cut(s) 32, 88
BstHHI GCGC 2 cut(s) 31, 87
BstKTI GATC 2 cut(s) 170, 337
BstMBI GATC 2 cut(s) 167, 334
BstMWI GCNNNNNNNGC 4 cut(s) 66, 93, 317, 345
BstNI CCWGG 2 cut(s) 209, 359
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 207, 262, 357
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 60
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 226, 305, 373
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 322, 341
CfoI GCGC 2 cut(s) 31, 87
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 62, 158
CseI GACGC 2 cut(s) 91, 248
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 1 cut(s) 50
CviJI RGCY 8 cut(s) 108, 133, 143, 212, 275, 311, 362, 375
CviKI_1 RGCY 8 cut(s) 108, 133, 143, 212, 275, 311, 362, 375
DdeI CTNAG 3 cut(s) 179, 312, 363
DpnI GATC 2 cut(s) 169, 336
DpnII GATC 2 cut(s) 167, 334
EciI GGCGGA 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 62, 158
Eco81I CCTNAGG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 207, 357
FaeI CATG 1 cut(s) 53
FaiI YATR 5 cut(s) 51, 78, 130, 241, 243
FaqI GGGAC 2 cut(s) 246, 247
FatI CATG 1 cut(s) 49
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 27, 373
FokI GGATG 2 cut(s) 233, 312
Fsp4HI GCNGC 2 cut(s) 27, 373
FspBI CTAG 2 cut(s) 23, 36
GlaI GCGC 2 cut(s) 30, 86
GluI GCNGC 2 cut(s) 27, 373
GsuI CTGGAG 1 cut(s) 370
HaeII RGCGCY 2 cut(s) 32, 88
HaeIII GGCC 1 cut(s) 212
HapII CCGG 3 cut(s) 99, 264, 340
HgaI GACGC 2 cut(s) 91, 248
HhaI GCGC 2 cut(s) 31, 87
Hin1I GRCGYC 2 cut(s) 102, 259
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 2 cut(s) 29, 85
HinP1I GCGC 2 cut(s) 29, 85
HinfI GANTC 2 cut(s) 91, 304
HpaII CCGG 3 cut(s) 99, 264, 340
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 93, 317, 345
HpyF3I CTNAG 3 cut(s) 179, 312, 363
Hsp92I GRCGYC 2 cut(s) 102, 259
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 2 cut(s) 29, 85
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 167, 334
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 2 cut(s) 23, 36
MalI GATC 2 cut(s) 169, 336
MboI GATC 2 cut(s) 167, 334
MboII GAAGA 2 cut(s) 65, 344
MluCI AATT 2 cut(s) 147, 153
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 6 cut(s) 15, 32, 174, 307, 345, 358
MreI CGCCGGCG 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 339
MspI CCGG 3 cut(s) 99, 264, 340
MspR9I CCNGG 3 cut(s) 209, 264, 359
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 2 cut(s) 209, 359
MwoI GCNNNNNNNGC 4 cut(s) 66, 93, 317, 345
NaeI GCCGGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 167, 334
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 19, 356
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 28, 374
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PshAI GACNNNNGTC 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 207, 357
PspGI CCWGG 2 cut(s) 207, 357
PspN4I GGNNCC 2 cut(s) 19, 356
PspPI GGNCC 2 cut(s) 62, 158
SatI GCNGC 2 cut(s) 27, 373
Sau3AI GATC 2 cut(s) 167, 334
Sau96I GGNCC 2 cut(s) 62, 158
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 209, 264, 359
SetI ASST 4 cut(s) 43, 110, 163, 360
SgrAI CRCCGGYG 1 cut(s) 339
SinI GGWCC 2 cut(s) 62, 158
Sse9I AATT 2 cut(s) 147, 153
SsiI CCGC 3 cut(s) 60, 283, 372
SspMI CTAG 2 cut(s) 23, 36
StyD4I CCNGG 3 cut(s) 207, 262, 357
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 147, 153
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 304
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 66, 216
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 62, 158
XagI CCTNNNNNAGG 1 cut(s) 362
XspI CTAG 2 cut(s) 23, 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.