Rw4G012480

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
29359480 .. 29363384
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012480.1

Sequence Viewer

Length: 3351 bp
ATGAGGAGTTCGAGTGGCGACCCCCCCTCTCGGGGTCGTCTTTGGCCGCAAATGGCCGTGGCTTTTGCAGCCATAGTTGTCGTCCTTTCGAGCAATGTGGGTTCAGTTCAAGCTGATCATCCTTACATTTACTCTTCACCCCCACCGCCTTATGTCTACAGCTCGCCACCACCCCCCGTTCACTCTCCTCCACCACCGTACGTGTACAAGTCACCGCCTCCACCATCGCCTTCACCACCTCCTCCTTATGTCTACAAGTCACCTCCCCCACCATCGCCTTCACCACCACCTCCTTACGTCTACAAGTCACCCCCTCCACCATCGCCTTCTCCACCACCACCGTATGTGTACAAGTCTCCTCCACCTCCCTCACCTAAATTGCCTCCGTACGAGTACAAGTCACCACCACCTCCATCACCTTCTCCCCCACCACCATACGTCTACAAGTCTCCACCGCCTCCTTCCCCATCTCCACCACCACCTTACTACTACAAATCTCCTCCACCTCCAGCATATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGCACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCTGCACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGCACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGCACATTCTCCACCACCACCTTACTACTATAAGTCTCCTCCTCCACCTTCTCCCTCACCACCGCCACCATACTACTACAAGTCCCCCCCACCTCCTTCTCCCTCACCTCCTCCACCATACATCTACAAATCCCCTCCACCACCTTCCCCATCTCCTCCTCCACCATACTACTACAAGTCTCCTCCACCACCATCACCAAAGCCGTACGTGTACAAGTCTCCGCCACCACCATCGCCGAAGCCTTACTACTACCAATCTCCTCCACCACCGGCTCCGTACTATCCACACCCACACCCCCACCACCAGCCATTGATCGTCAAGGTCGTCGGAAAGGTCTACTGCTACAGATGCTACGACTGGGGATATCCAATCAAGTCTCACGACAAGAAACATCTCGAAGGCGCTGTTGTTGAGATCACATGCTGGGCAGGCAAAAAGGCGATCATGGCTTACGGTAAAACCAAGAACAACGGTAAATTCAGCGTCGCAGTCGAAGATTTTGACTACGGTAAATATGGTGCCGAGGCTTGTACCGCGAAGCTCCACATGGCACCCAAGGGTTCACTCTGCAGCATTCCAACTCCTCTCAACTGGGGCGACAAGGGAGCCAAGCTGAAGGTCAAGTCCAAGAACAATTGGGAGGTTGTGCTCAAGGCCAAGCCCTTTGCTTTCGCTCCAAAGACCCCTTACAAGGAGTGTGCTAAGCCCGCTCCACACCATCCTTCTCCTTACATCTACAAGTCGCCGCCTCCACCAACCCCGACTTACGTCTACAAATCTCCTCCTCCACCGTCGCCACAGTACATTTACAAGTCGCCGCCACCGCCAGCTTACTACTACAAGTCGCCACCACCACCATCACCAAAGCCGTATGTGTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGTGTACAAGTCTCCTCCGCCACCATCTCCGAAGCCGTACGTGTACAAGTCTCCACCGCCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCACCGCCGCCATCTCCCAAGCCGTACGTGTACCAGTCTCCTCCACCACCATCACCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGAGTACAAGTCTCCTCCACCACCATCACCCAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGAGTACAAGTCTCCTCCACCACCATCACCCAAGCCGTACGTGTACAAGTCTCCACCGCCACCGCCACCAAAGTACTACTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGAGTACAAGTCTCCTCCACCACCATCACCCAAGCCATACGTGTACAAGTCTCCACCACCACCGCCACCAAAGTACTACTACAAGTCTCCACCACCACCGACTTACTACTACAAGTCACCACCACCACCCACATACATCTACAAGTCACCACCACCACCATCACCGAAGCCATACATCTACAAGTCTCCACCACCACCGCCACCAAAGTACTACTACAAGTCTCCACCCCCACCAACTTACGTATACAAGTCACCACCACCACCCACATACATCTACAAGTCACCACCACCACCATCACCTACACCTTACGTGTACAAGTCTCCACCACCACCACCACCAAAGTACTACTACAAGTCACCACCGCCACCAACTTATATCTACAAGTCACCTCCACCACCAGCATATATCTACAAGTCACCACCACCACCACATTCTCACCCTCACCCACCCTACATTTACAAGTCTCCACCACCACCTTCACCATCTCCTCCTCCTCCATACTACTACAAATCCCCACCACCACCATCCCCATCACCACCACCACCATACATCTACAAGTCTCCTCCACCTCCATCACCTTCTCCTCCACCTCCATACTACTACAAATCACCACCACCACCATCACCCTCTCCCCCACATCCATACTACTACAAATCTCCCCCTCCACCATCACCTTCTCCTCCTCCACCTTATATCTACAAGTCTCCCCCACCACCGTCACCCTTTCCTCCCCCTCCATACTACTACAAATCTCCCCCTCCACCCTCACCATCTCCTCCTCCACCATACCACTACACCTCACCACCACCGCCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCCCCACACAAGGAACCAAAGCCAACTCCTCCCTACCATTACACATCTCCACCACCACCATCGCCATCTCCTCCACCACCATACCACTACACCTCACCACCACCACCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCCCCACACAAGGAACCAAAGCCAACTCCTCCCTACCATTACACATCTCCACCACCACCATCGCCATCTCCTCCTCCACCATACCACTACACCTCCCCACCTCCACCTTCCCCATCTCCTCCCCCACCATACGCTTACAAGTCTCCACCACCTCCTTCACCTTCTCCTCCTCCTCCATACGTCTACAAGTCACCTCCACCTCCGGTGAAATCTCCCCCACCACCGGTGTACATTTACGCCTCTCCCCCACCACCCACTCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1116

Amino Acids

123.34

Weight (kDa)

9.67

Isoelectric Point (pI)

134.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_2 PF04554 39 - 75 4.1e-07 Extensin-like region
Pollen_Ole_e_1 PF01190 342 - 436 2.6e-15 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1220, 1252
AccBSI CCGCTC 1 cut(s) 1412
AccI GTMKAC 9 cut(s) 156, 252, 300, 441, 1038, 1473, 1695, 2322, 3267
AccII CGCG 1 cut(s) 1238
AcoI YGGCCR 2 cut(s) 44, 54
AcsI RAATTY 1 cut(s) 1178
AcuI CTGAAG 1 cut(s) 1337
AfiI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1393, 2944, 3094, 3307
AgeI ACCGGT 1 cut(s) 3307
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 5 cut(s) 113, 162, 1243, 1315, 1532
AluI AGCT 5 cut(s) 113, 162, 1243, 1315, 1532
Alw21I GWGCWC 1 cut(s) 1353
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 3 cut(s) 44, 54, 1356
ApeKI GCWGC 2 cut(s) 68, 1272
ApoI RAATTY 1 cut(s) 1178
AsiGI ACCGGT 1 cut(s) 3307
AspLEI GCGC 1 cut(s) 1106
AvaI CYCGRG 1 cut(s) 30
BanI GGYRCC 2 cut(s) 1220, 1252
BarI GAAGNNNNNNTAC 2 cut(s) 932, 964
Bbv12I GWGCWC 1 cut(s) 1353
BbvI GCAGC 2 cut(s) 80, 1284
BclI TGATCA 1 cut(s) 115
BfmI CTRYAG 3 cut(s) 157, 1045, 1270
BfoI RGCGCY 1 cut(s) 1107
BisI GCNGC 6 cut(s) 47, 69, 1273, 1448, 1520, 1712
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 6 cut(s) 48, 70, 1274, 1449, 1521, 1713
BmcAI AGTACT 4 cut(s) 2039, 2153, 2288, 2423
BmeT110I CYCGRG 1 cut(s) 30
BmiI GGNNCC 6 cut(s) 975, 1222, 1254, 1309, 2949, 3099
BmrI ACTGGG 2 cut(s) 1069, 1303
BmsI GCATC 1 cut(s) 1040
BmuI ACTGGG 2 cut(s) 1069, 1303
BoxI GACNNNNGTC 1 cut(s) 1469
BpmI CTGGAG 4 cut(s) 492, 540, 636, 684
Bpu1102I GCTNAGC 1 cut(s) 1404
BpuEI CTTGAG 1 cut(s) 1337
BsaJI CCNNGG 3 cut(s) 57, 1224, 1257
BsaWI WCCGGW 2 cut(s) 3286, 3307
BsaXI ACNNNNNCTCC 3 cut(s) 28, 3161, 3191
Bsc4I CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1393, 2944, 3094, 3307
Bse118I RCCGGY 2 cut(s) 970, 3307
Bse1I ACTGG 3 cut(s) 1064, 1298, 1738
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 57, 1224, 1257
BseGI GGATG 4 cut(s) 118, 1420, 2603, 2716
BseLI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1393, 2944, 3094, 3307
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 1064, 1298, 1738
BseXI GCAGC 2 cut(s) 80, 1284
BseYI CCCAGC 1 cut(s) 1125
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 1238
BshFI GGCC 3 cut(s) 46, 56, 1358
BshNI GGYRCC 2 cut(s) 1220, 1252
BshTI ACCGGT 1 cut(s) 3307
BsiHKAI GWGCWC 1 cut(s) 1353
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 3 cut(s) 971, 3287, 3308
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 7 cut(s) 30, 31, 32, 1393, 2944, 3094, 3307
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 46, 56, 1358
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 1353
Bsp143I GATC 4 cut(s) 115, 1014, 1116, 1143
Bsp1720I GCTNAGC 1 cut(s) 1404
BspANI GGCC 3 cut(s) 46, 56, 1358
BspFNI CGCG 1 cut(s) 1238
BspLI GGNNCC 6 cut(s) 975, 1222, 1254, 1309, 2949, 3099
BspMAI CTGCAG 1 cut(s) 1274
BspT107I GGYRCC 2 cut(s) 1220, 1252
BsrBI CCGCTC 1 cut(s) 1412
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 2 cut(s) 970, 3307
BsrI ACTGG 3 cut(s) 1064, 1298, 1738
BssAI RCCGGY 2 cut(s) 970, 3307
BssECI CCNNGG 3 cut(s) 57, 1224, 1257
BssMI GATC 4 cut(s) 115, 1014, 1116, 1143
BssNAI GTATAC 1 cut(s) 2323
BssT1I CCWWGG 1 cut(s) 1257
Bst1107I GTATAC 1 cut(s) 2323
Bst4CI ACNGT 8 cut(s) 198, 342, 1157, 1175, 1211, 1494, 1503, 2796
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 164, 1132, 1410, 1530
BstDEI CTNAG 1 cut(s) 1404
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 4 cut(s) 118, 1420, 2603, 2716
BstFNI CGCG 1 cut(s) 1238
BstH2I RGCGCY 1 cut(s) 1107
BstHHI GCGC 1 cut(s) 1106
BstKTI GATC 4 cut(s) 118, 1017, 1119, 1146
BstMBI GATC 4 cut(s) 115, 1014, 1116, 1143
BstMWI GCNNNNNNNGC 7 cut(s) 68, 1050, 1131, 1148, 1235, 1409, 1525
BstNSI RCATGY 1 cut(s) 1125
BstPAI GACNNNNGTC 1 cut(s) 1469
BstSFI CTRYAG 3 cut(s) 157, 1045, 1270
BstSNI TACGTA 1 cut(s) 2320
BstUI CGCG 1 cut(s) 1238
BstV1I GCAGC 2 cut(s) 80, 1284
BstZ17I GTATAC 1 cut(s) 2323
BsuRI GGCC 3 cut(s) 46, 56, 1358
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 6 cut(s) 210, 258, 306, 918, 2979, 3129
BtsCI GGATG 4 cut(s) 118, 1420, 2603, 2716
Cac8I GCNNGC 4 cut(s) 164, 1132, 1410, 1530
CfoI GCGC 1 cut(s) 1106
Cfr10I RCCGGY 2 cut(s) 970, 3307
CseI GACGC 1 cut(s) 1174
CspAI ACCGGT 1 cut(s) 3307
CviAII CATG 3 cut(s) 1122, 1147, 1249
DdeI CTNAG 1 cut(s) 1404
DpnI GATC 4 cut(s) 117, 1016, 1118, 1145
DpnII GATC 4 cut(s) 115, 1014, 1116, 1143
EaeI YGGCCR 2 cut(s) 44, 54
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 2 cut(s) 912, 1620
Eco105I TACGTA 1 cut(s) 2320
Eco130I CCWWGG 1 cut(s) 1257
Eco32I GATATC 1 cut(s) 1067
Eco57I CTGAAG 1 cut(s) 1337
Eco88I CYCGRG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 1067
EcoT14I CCWWGG 1 cut(s) 1257
ErhI CCWWGG 1 cut(s) 1257
FaeI CATG 3 cut(s) 1125, 1150, 1252
FaqI GGGAC 1 cut(s) 769
FatI CATG 3 cut(s) 1121, 1146, 1248
FauI CCCGC 1 cut(s) 1417
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 9 cut(s) 156, 252, 300, 441, 1038, 1473, 1695, 2322, 3267
Fnu4HI GCNGC 6 cut(s) 47, 69, 1273, 1448, 1520, 1712
FokI GGATG 4 cut(s) 105, 1407, 2590, 2703
Fsp4HI GCNGC 6 cut(s) 47, 69, 1273, 1448, 1520, 1712
GlaI GCGC 1 cut(s) 1105
GluI GCNGC 6 cut(s) 47, 69, 1273, 1448, 1520, 1712
GsaI CCCAGC 1 cut(s) 1129
GsuI CTGGAG 4 cut(s) 492, 540, 636, 684
HaeII RGCGCY 1 cut(s) 1107
HaeIII GGCC 3 cut(s) 46, 56, 1358
HapII CCGG 3 cut(s) 971, 3287, 3308
HgaI GACGC 1 cut(s) 1174
HhaI GCGC 1 cut(s) 1106
Hin1II CATG 3 cut(s) 1125, 1150, 1252
Hin6I GCGC 1 cut(s) 1104
HinP1I GCGC 1 cut(s) 1104
HpaII CCGG 3 cut(s) 971, 3287, 3308
Hpy188I TCNGA 4 cut(s) 1031, 1644, 1800, 1917
Hpy188III TCNNGA 2 cut(s) 1082, 1097
Hpy99I CGWCG 3 cut(s) 1031, 1190, 1498
HpyCH4III ACNGT 8 cut(s) 198, 342, 1157, 1175, 1211, 1494, 1503, 2796
HpyCH4V TGCA 3 cut(s) 68, 608, 1272
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 1050, 1131, 1148, 1235, 1409, 1525
HpyF3I CTNAG 1 cut(s) 1404
Hsp92II CATG 3 cut(s) 1125, 1150, 1252
HspAI GCGC 1 cut(s) 1104
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 115, 1014, 1116, 1143
LmnI GCTCC 5 cut(s) 979, 1248, 1307, 1381, 1417
Lsp1109I GCAGC 2 cut(s) 80, 1284
LweI GCATC 1 cut(s) 1040
MalI GATC 4 cut(s) 117, 1016, 1118, 1145
MbiI CCGCTC 1 cut(s) 1412
MboI GATC 4 cut(s) 115, 1014, 1116, 1143
MboII GAAGA 2 cut(s) 126, 1208
MfeI CAATTG 1 cut(s) 1336
MhlI GDGCHC 1 cut(s) 1353
MluCI AATT 3 cut(s) 377, 1178, 1336
MmeI TCCRAC 2 cut(s) 1009, 1304
MspI CCGG 3 cut(s) 971, 3287, 3308
MunI CAATTG 1 cut(s) 1336
Mva1269I GAATGC 1 cut(s) 1275
MvnI CGCG 1 cut(s) 1238
MwoI GCNNNNNNNGC 7 cut(s) 68, 1050, 1131, 1148, 1235, 1409, 1525
NdeII GATC 4 cut(s) 115, 1014, 1116, 1143
NlaIII CATG 3 cut(s) 1125, 1150, 1252
NlaIV GGNNCC 6 cut(s) 975, 1222, 1254, 1309, 2949, 3099
NmeAIII GCCGAG 1 cut(s) 1249
NspI RCATGY 1 cut(s) 1125
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PctI GAATGC 1 cut(s) 1275
PinAI ACCGGT 1 cut(s) 3307
PkrI GCNGC 6 cut(s) 48, 70, 1274, 1449, 1521, 1713
PshAI GACNNNNGTC 1 cut(s) 1469
PspFI CCCAGC 1 cut(s) 1125
PspN4I GGNNCC 6 cut(s) 975, 1222, 1254, 1309, 2949, 3099
PstI CTGCAG 1 cut(s) 1274
SatI GCNGC 6 cut(s) 47, 69, 1273, 1448, 1520, 1712
Sau3AI GATC 4 cut(s) 115, 1014, 1116, 1143
ScaI AGTACT 4 cut(s) 2039, 2153, 2288, 2423
SduI GDGCHC 1 cut(s) 1353
SfaNI GCATC 1 cut(s) 1040
SfcI CTRYAG 3 cut(s) 157, 1045, 1270
SgrAI CRCCGGYG 1 cut(s) 3307
SmlI CTYRAG 1 cut(s) 1352
SmoI CTYRAG 1 cut(s) 1352
SnaBI TACGTA 1 cut(s) 2320
Sse9I AATT 3 cut(s) 377, 1178, 1336
StyI CCWWGG 1 cut(s) 1257
TaaI ACNGT 8 cut(s) 198, 342, 1157, 1175, 1211, 1494, 1503, 2796
TaqI TCGA 4 cut(s) 11, 89, 1098, 1194
TasI AATT 3 cut(s) 377, 1178, 1336
TauI GCSGC 4 cut(s) 49, 1450, 1522, 1714
TseI GCWGC 2 cut(s) 68, 1272
TspGWI ACGGA 2 cut(s) 375, 966
XapI RAATTY 1 cut(s) 1178
XceI RCATGY 1 cut(s) 1125
XmiI GTMKAC 9 cut(s) 156, 252, 300, 441, 1038, 1473, 1695, 2322, 3267
ZrmI AGTACT 4 cut(s) 2039, 2153, 2288, 2423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.