Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

28940969 .. 28942532

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTCACTCTCTCTCAACCCTAGCGGCGCCATCTAGAGGAGCTGAGCATGAAGACGGCAATCTTTGCCGCCCTCGTACAGCGCGCCGGACTCGATCCGATGTCTGTTTCCTCCTCCTGTCTTTTGTATGGCTGGTTTGTCAAAGCTTGGCTCCGAGTTCAATCGGCTCTCTCCGATCTCTTACAGCCAATCCTATCCTAAGGGAGACGATCGTTGCTGGCAAGTGCTTGGCCTATTGGGCTGATGATGGTGGGACGAAATTTGCTGTTTTGATGTGGCATCCAGGCGGTTTGGCTCGACGGTGGCAAGCCGATGTTGGTGGAATCAATATTTTTGATGGAGGAATTGTCGTGCTTTGGCTGCGAGCGTTGAGTCATGGTGGCCGCAAAGACCCAGATTGGGTGGCAACTTGGTTGAGAAAGAAAGTGGTGCAGAAGAGTGACGACCGGTGTAGGAGGACCCTGGCTGAGGATGACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

9.4

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	85
AciI	CCGC	4 cut(s)	26, 70, 288, 385
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	38, 400, 469
AgeI	ACCGGT	1 cut(s)	447
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	2 cut(s)	283, 462
AluBI	AGCT	2 cut(s)	44, 147
AluI	AGCT	2 cut(s)	44, 147
Alw26I	GTCTC	2 cut(s)	9, 200
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	2 cut(s)	231, 382
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	260
AsiGI	ACCGGT	1 cut(s)	447
AspLEI	GCGC	3 cut(s)	31, 85, 87
AspS9I	GGNCC	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	40, 242, 332
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	285, 464
BcoDI	GTCTC	2 cut(s)	9, 200
BfaI	CTAG	2 cut(s)	23, 36
BfoI	RGCGCY	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	4 cut(s)	27, 70, 362, 385
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	4 cut(s)	28, 71, 363, 386
Bme1390I	CCNGG	2 cut(s)	285, 464
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	3 cut(s)	30, 153, 461
BmrFI	CCNGG	2 cut(s)	285, 464
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 400, 469
Bse118I	RCCGGY	1 cut(s)	447
Bse21I	CCTNAGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	285, 464
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	280, 478
BseLI	CCNNNNNNNGG	3 cut(s)	38, 400, 469
BseMII	CTCAG	2 cut(s)	36, 459
BsePI	GCGCGC	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	54, 104
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	2 cut(s)	213, 448
BshFI	GGCC	2 cut(s)	233, 384
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	447
BsiEI	CGRYCG	2 cut(s)	213, 448
BsiSI	CCGG	2 cut(s)	88, 448
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	38, 400, 469
BsmAI	GTCTC	2 cut(s)	9, 200
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	233, 384
Bsp143I	GATC	3 cut(s)	95, 176, 210
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	4 cut(s)	26, 70, 288, 385
BspANI	GGCC	2 cut(s)	233, 384
BspCNI	CTCAG	2 cut(s)	37, 460
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	30, 153, 461
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	462
BssHII	GCGCGC	1 cut(s)	83
BssMI	GATC	3 cut(s)	95, 176, 210
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	285, 464
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstC8I	GCNNGC	4 cut(s)	85, 220, 309, 366
BstDEI	CTNAG	3 cut(s)	45, 200, 468
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	280, 478
BstFNI	CGCG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	3 cut(s)	31, 85, 87
BstKTI	GATC	3 cut(s)	98, 179, 213
BstMAI	GTCTC	2 cut(s)	9, 200
BstMBI	GATC	3 cut(s)	95, 176, 210
BstMCI	CGRYCG	2 cut(s)	213, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 239, 361
BstNI	CCWGG	2 cut(s)	285, 464
BstSCI	CCNGG	2 cut(s)	283, 462
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	233, 384
BtsCI	GGATG	2 cut(s)	280, 478
Cac8I	GCNNGC	4 cut(s)	85, 220, 309, 366
CfoI	GCGC	3 cut(s)	31, 85, 87
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	447
CviAII	CATG	2 cut(s)	50, 377
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	45, 200, 468
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	3 cut(s)	97, 178, 212
DpnII	GATC	3 cut(s)	95, 176, 210
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	283, 462
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	2 cut(s)	53, 380
FaiI	YATR	3 cut(s)	51, 130, 378
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	49, 376
Fnu4HI	GCNGC	4 cut(s)	27, 70, 362, 385
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	27, 70, 362, 385
FspBI	CTAG	2 cut(s)	23, 36
GlaI	GCGC	3 cut(s)	30, 84, 86
GluI	GCNGC	4 cut(s)	27, 70, 362, 385
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	233, 384
HapII	CCGG	2 cut(s)	88, 448
HhaI	GCGC	3 cut(s)	31, 85, 87
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	53, 380
Hin6I	GCGC	3 cut(s)	29, 83, 85
HinP1I	GCGC	3 cut(s)	29, 83, 85
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	91, 324, 373
HpaII	CCGG	2 cut(s)	88, 448
Hpy188I	TCNGA	3 cut(s)	100, 156, 176
Hpy188III	TCNNGA	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 239, 361
HpyF3I	CTNAG	3 cut(s)	45, 200, 468
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	53, 380
HspAI	GCGC	3 cut(s)	29, 83, 85
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	95, 176, 210
LmnI	GCTCC	2 cut(s)	41, 157
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	23, 36
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	3 cut(s)	97, 178, 212
MboI	GATC	3 cut(s)	95, 176, 210
MboII	GAAGA	2 cut(s)	65, 448
MluCI	AATT	2 cut(s)	260, 345
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	85, 382
MnlI	CCTC	7 cut(s)	32, 84, 122, 125, 335, 450, 463
MspI	CCGG	2 cut(s)	88, 448
MspR9I	CCNGG	2 cut(s)	285, 464
MvaI	CCWGG	2 cut(s)	285, 464
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	66, 239, 361
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	3 cut(s)	95, 176, 210
NlaIII	CATG	2 cut(s)	53, 380
NlaIV	GGNNCC	3 cut(s)	30, 153, 461
NmuCI	GTSAC	1 cut(s)	440
PauI	GCGCGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	28, 71, 363, 386
Ple19I	CGATCG	1 cut(s)	213
PleI	GAGTC	2 cut(s)	85, 381
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	2 cut(s)	85, 381
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	283, 462
PspGI	CCWGG	2 cut(s)	283, 462
PspN4I	GGNNCC	3 cut(s)	30, 153, 461
PspPI	GGNCC	1 cut(s)	459
PspPPI	RGGWCCY	1 cut(s)	459
PteI	GCGCGC	1 cut(s)	83
PvuI	CGATCG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	4 cut(s)	27, 70, 362, 385
Sau3AI	GATC	3 cut(s)	95, 176, 210
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	85, 382
ScrFI	CCNGG	2 cut(s)	285, 464
SetI	ASST	2 cut(s)	46, 149
SfaNI	GCATC	1 cut(s)	289
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	459
Sse9I	AATT	2 cut(s)	260, 345
SsiI	CCGC	4 cut(s)	26, 70, 288, 385
SspDI	GGCGCC	1 cut(s)	28
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	23, 36
StyD4I	CCNGG	2 cut(s)	283, 462
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	94, 298
TasI	AATT	2 cut(s)	260, 345
TauI	GCSGC	3 cut(s)	29, 72, 387
TfiI	GAWTC	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	35
XspI	CTAG	2 cut(s)	23, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.