Prupe.1G182200_v2.0.a1

Extensin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001240
Physical Location & Seq
Forward (+)
16026957 .. 16027555
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G182200.1

Sequence Viewer

Length: 462 bp
ATGACGACAATGGGTGGCGGCTCCTCTTGGGGCCGTCTTTGGCCTCAAATGGCAGTGGCTTTAGCAGCTATACTAGTTGTGGTTTCAAGCAATGTGGGTTCAGTTGAAGCAAATGCTTATCCCTACTCTTCACCCCCACCACCACCTTATGTTTATAGCTCACCACCACCTCCTGTTCACTCTCCACCACCGCCATATGTCTACATGTCTCCACCACCTCCGTCACCGTCACCACCGCCGCCTTATGTGTACAAGTCACCACCACCACCATCACCATCCCCACCACCGACTTATGAGTACAAGTCTCCCCCACCGCCTTCTCCTTCACCACCACCACCTTATGTGTACAAGTCTCCACCTCCTCCACCAAAAGAACTACCTCCGTACCACTACAAGTCTCCACCACCACCTTCTCCTTCACCGCCGCCACCTTACCACTATACATCTCCTCAACGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Extensin_2 Pollen_Ole_e_I

Protein Analysis

154

Amino Acids

16.36

Weight (kDa)

9.22

Isoelectric Point (pI)

141.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AciI CCGC 7 cut(s) 18, 191, 236, 239, 314, 422, 425
AfaI GTAC 4 cut(s) 251, 299, 347, 386
AflIII ACRYGT 2 cut(s) 204, 454
AgsI TTSAA 2 cut(s) 87, 107
AhlI ACTAGT 1 cut(s) 73
AluBI AGCT 2 cut(s) 68, 159
AluI AGCT 2 cut(s) 68, 159
Alw26I GTCTC 4 cut(s) 213, 309, 357, 402
AoxI GGCC 2 cut(s) 31, 41
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 8 cut(s) 123, 153, 216, 222, 249, 264, 318, 411
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 277, 283
BceAI ACGGC 1 cut(s) 18
BcoDI GTCTC 4 cut(s) 213, 309, 357, 402
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 1 cut(s) 74
BisI GCNGC 4 cut(s) 19, 66, 239, 425
BlsI GCNGC 4 cut(s) 20, 67, 240, 426
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 22, 32
Bse3DI GCAATG 1 cut(s) 97
BseGI GGATG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 97
BseRI GAGGAG 3 cut(s) 13, 351, 438
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 33, 43
BsmAI GTCTC 4 cut(s) 213, 309, 357, 402
BsnI GGCC 2 cut(s) 33, 43
Bsp1407I TGTACA 2 cut(s) 249, 345
BspACI CCGC 7 cut(s) 18, 191, 236, 239, 314, 422, 425
BspANI GGCC 2 cut(s) 33, 43
BspLI GGNNCC 2 cut(s) 22, 32
BsrDI GCAATG 1 cut(s) 97
BsrGI TGTACA 2 cut(s) 249, 345
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 133
BstAUI TGTACA 2 cut(s) 249, 345
BstF5I GGATG 1 cut(s) 275
BstMAI GTCTC 4 cut(s) 213, 309, 357, 402
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 33, 43
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 250, 298, 346, 385
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 21, 33, 43, 59, 68, 159
CviKI_1 RGCY 6 cut(s) 21, 33, 43, 59, 68, 159
CviQI GTAC 4 cut(s) 250, 298, 346, 385
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
FaeI CATG 1 cut(s) 208
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 19, 66, 239, 425
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 19, 66, 239, 425
FspBI CTAG 1 cut(s) 74
GluI GCNGC 4 cut(s) 19, 66, 239, 425
HaeIII GGCC 2 cut(s) 33, 43
Hin1II CATG 1 cut(s) 208
HphI GGTGA 8 cut(s) 123, 153, 216, 222, 249, 264, 318, 411
Hpy166II GTNNAC 4 cut(s) 178, 202, 250, 346
Hpy188I TCNGA 1 cut(s) 461
Hpy8I GTNNAC 4 cut(s) 178, 202, 250, 346
HpyAV CCTTC 4 cut(s) 327, 333, 420, 426
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 1 cut(s) 208
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 1 cut(s) 186
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 222, 228, 255
MboII GAAGA 1 cut(s) 120
MnlI CCTC 8 cut(s) 34, 54, 180, 228, 369, 372, 390, 459
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeI CATATG 1 cut(s) 196
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 22, 32
NmuCI GTSAC 3 cut(s) 222, 228, 255
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PkrI GCNGC 4 cut(s) 20, 67, 240, 426
PscI ACATGT 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 22, 32
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 4 cut(s) 251, 299, 347, 386
RsaNI GTAC 4 cut(s) 250, 298, 346, 385
SatI GCNGC 4 cut(s) 19, 66, 239, 425
Sau96I GGNCC 1 cut(s) 31
SgeI CNNG 9 cut(s) 39, 86, 99, 185, 217, 265, 313, 361, 406
SpeI ACTAGT 1 cut(s) 73
SsiI CCGC 7 cut(s) 18, 191, 236, 239, 314, 422, 425
SspMI CTAG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 457
TatI WGTACW 3 cut(s) 249, 297, 345
TauI GCSGC 3 cut(s) 21, 241, 427
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 3 cut(s) 222, 228, 255
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 3 cut(s) 222, 228, 255
TspGWI ACGGA 2 cut(s) 210, 372
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.