Rh4AG081700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001240
Physical Location & Seq
Forward (+)
17082741 .. 17083528
788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG081700.1

Sequence Viewer

Length: 450 bp
ATGAGGAAGTCTCGCACGACTGGAACCCTAGCGGCGCCGACTGAAGGTGCTGAGCATGAAGATGGCGGTCTTGGCCATCCCCGTATGACACGCCAGGCTCATTCTGGCGTTGGCTTTCTTCCCATGATCTTTTTATGGATGTTTTGTCAAAACCGGGTTCTGATTTCGATCGGATCTTTCCCCTCCCTTACCGCAGATCCGCTCTTGAGGGTGAGGAGTTATGCTGGTAAGTGCCTGGCCTCTTGGGCTACTGATGGTGGGACGGCGTGTGCCATCTCAGTGTGGCCCGACAATTTGGCTCGATGGTGTACGGCGGGCCTTGGCGGATTCAATTTATTCATTCCTGATTTTGACAGAGGAGGTGCCATGATTGGGGTGCAAGTATCGAACATGGTGGCAGCGAACAACCAGATTGGATGGAGCTCTGCGTCGTGGGACGGAATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.9

Weight (kDa)

7.72

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 362
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 6 cut(s) 32, 66, 192, 200, 314, 324
AclWI GGATC 2 cut(s) 181, 191
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 44, 372
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 2 cut(s) 93, 234
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 181, 191
AoxI GGCC 4 cut(s) 73, 237, 284, 316
ApeKI GCWGC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 285, 316
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 223
BalI TGGCCA 1 cut(s) 75
BanI GGYRCC 2 cut(s) 34, 362
BanII GRGCYC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 410
BccI CCATC 6 cut(s) 56, 84, 248, 281, 297, 411
BceAI ACGGC 2 cut(s) 279, 327
BciT130I CCWGG 2 cut(s) 95, 236
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 33, 399
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 2 cut(s) 34, 400
Bme1390I CCNGG 3 cut(s) 95, 155, 236
BmgT120I GGNCC 2 cut(s) 285, 316
BmiI GGNNCC 3 cut(s) 25, 36, 364
BmrFI CCNGG 3 cut(s) 95, 155, 236
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 372
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 2 cut(s) 95, 236
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 3 cut(s) 76, 144, 422
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 44, 372
BseMII CTCAG 2 cut(s) 42, 291
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 229, 372
BseXI GCAGC 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 4 cut(s) 75, 239, 286, 318
BshNI GGYRCC 2 cut(s) 34, 362
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 425
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 44, 372
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 4 cut(s) 75, 239, 286, 318
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 4 cut(s) 126, 168, 173, 196
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 6 cut(s) 32, 66, 192, 200, 314, 324
BspANI GGCC 4 cut(s) 75, 239, 286, 318
BspCNI CTCAG 2 cut(s) 43, 290
BspLI GGNNCC 3 cut(s) 25, 36, 364
BspPI GGATC 2 cut(s) 181, 191
BspT107I GGYRCC 2 cut(s) 34, 362
BsrBI CCGCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 4 cut(s) 126, 168, 173, 196
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 95, 236
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 51, 277
BstF5I GGATG 3 cut(s) 76, 144, 422
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 129, 171, 176, 199
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 4 cut(s) 126, 168, 173, 196
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 72, 245
BstNI CCWGG 2 cut(s) 95, 236
BstSCI CCNGG 3 cut(s) 93, 153, 234
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 173, 196
BstYI RGATCY 2 cut(s) 173, 196
BsuRI GGCC 4 cut(s) 75, 239, 286, 318
BtsCI GGATG 3 cut(s) 76, 144, 422
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 285, 316
CseI GACGC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 56, 124, 367, 391
CviJI RGCY 9 cut(s) 75, 98, 114, 239, 248, 286, 299, 318, 423
CviKI_1 RGCY 9 cut(s) 75, 98, 114, 239, 248, 286, 299, 318, 423
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 51, 277
DinI GGCGCC 1 cut(s) 36
DpnI GATC 4 cut(s) 128, 170, 175, 198
DpnII GATC 4 cut(s) 126, 168, 173, 196
EaeI YGGCCR 1 cut(s) 73
EciI GGCGGA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 423
EcoRII CCWGG 2 cut(s) 93, 234
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 425
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 59, 127, 370, 394
FaiI YATR 7 cut(s) 57, 86, 125, 136, 222, 368, 392
FaqI GGGAC 1 cut(s) 274
FatI CATG 4 cut(s) 55, 123, 366, 390
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 33, 399
FokI GGATG 3 cut(s) 63, 151, 429
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 33, 399
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 33, 399
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 4 cut(s) 75, 239, 286, 318
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 417
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 4 cut(s) 59, 127, 370, 394
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 327
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 162, 173
Hpy188III TCNNGA 2 cut(s) 205, 344
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 245
HpyF3I CTNAG 2 cut(s) 51, 277
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 4 cut(s) 59, 127, 370, 394
HspAI GCGC 1 cut(s) 35
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 126, 168, 173, 196
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 1 cut(s) 410
MaeI CTAG 1 cut(s) 29
MalI GATC 4 cut(s) 128, 170, 175, 198
MbiI CCGCTC 1 cut(s) 202
MboI GATC 4 cut(s) 126, 168, 173, 196
MboII GAAGA 2 cut(s) 71, 110
MflI RGATCY 2 cut(s) 173, 196
MhlI GDGCHC 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 3 cut(s) 292, 331, 441
MluNI TGGCCA 1 cut(s) 75
Mly113I GGCGCC 1 cut(s) 35
MnlI CCTC 6 cut(s) 193, 201, 207, 250, 350, 353
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 1 cut(s) 448
MslI CAYNNNNRTG 2 cut(s) 60, 278
Msp20I TGGCCA 1 cut(s) 75
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 3 cut(s) 95, 155, 236
MvaI CCWGG 2 cut(s) 95, 236
MwoI GCNNNNNNNGC 2 cut(s) 72, 245
NarI GGCGCC 1 cut(s) 35
NciI CCSGG 1 cut(s) 155
NdeII GATC 4 cut(s) 126, 168, 173, 196
NlaIII CATG 4 cut(s) 59, 127, 370, 394
NlaIV GGNNCC 3 cut(s) 25, 36, 364
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 34, 400
Ple19I CGATCG 1 cut(s) 171
PluTI GGCGCC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 93, 234
PspGI CCWGG 2 cut(s) 93, 234
PspN4I GGNNCC 3 cut(s) 25, 36, 364
PspPI GGNCC 2 cut(s) 285, 316
PsuI RGATCY 2 cut(s) 173, 196
PvuI CGATCG 1 cut(s) 171
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 2 cut(s) 60, 278
SacI GAGCTC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 448
SatI GCNGC 2 cut(s) 33, 399
Sau3AI GATC 4 cut(s) 126, 168, 173, 196
Sau96I GGNCC 2 cut(s) 285, 316
ScrFI CCNGG 3 cut(s) 95, 155, 236
SduI GDGCHC 1 cut(s) 425
SetI ASST 3 cut(s) 49, 364, 425
SfoI GGCGCC 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 60, 278
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 3 cut(s) 292, 331, 441
SsiI CCGC 6 cut(s) 32, 66, 192, 200, 314, 324
SspDI GGCGCC 1 cut(s) 34
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 93, 153, 234
StyI CCWWGG 1 cut(s) 319
TaqI TCGA 3 cut(s) 167, 301, 386
TasI AATT 3 cut(s) 292, 331, 441
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 448
Tru9I TTAA 1 cut(s) 448
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 72, 328
TspRI CASTG 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.