Rh7CG112900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001240
Physical Location & Seq
Forward (+)
8732632 .. 8732940
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG112900.1

Sequence Viewer

Length: 309 bp
ATGGTATATAGTGTTGATGTTGGTGGAATCGATATGTCTATCCTTGGTTTTGATGCCTCGACTGTCGTGCGACTGTCGGGTCGTGGTGGCAATGACGACCTAGTTTGGATGGAAACCTGGCTGAAGAAGAAAGCAGTGTGGAAGATCGACTGCGTTGCAGGAGGAACTTGGCTGAGGATGGCGGCTGAGATGAGTGGCAGAGCTAGACTAGGTGCCGACGCTGATTTCGGGTTGTTAAAAGGTTGGGTGCCCAGAGCATTTGGGCAGCCCAATTTCTATAGGACGCCAAAGGGTGTATTTTATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.19

Weight (kDa)

9.25

Isoelectric Point (pI)

21.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 212, 247
AciI CCGC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 284
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 265
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
BaeGI GKGCMC 1 cut(s) 252
BanI GGYRCC 2 cut(s) 212, 247
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 103, 172
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 137, 171
BciT130I CCWGG 1 cut(s) 118
BfaI CTAG 4 cut(s) 101, 204, 209, 307
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 183, 266
BlsI GCNGC 2 cut(s) 184, 267
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 214, 249
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 114, 183
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 164, 177
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 1 cut(s) 277
BshNI GGYRCC 2 cut(s) 212, 247
BshVI ATCGAT 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 165, 178
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 214, 249
BspT107I GGYRCC 2 cut(s) 212, 247
BsrDI GCAATG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 64, 75
BstACI GRCGYC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 173, 186
BstF5I GGATG 2 cut(s) 114, 183
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 2 cut(s) 114, 183
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 2 cut(s) 227, 292
CviJI RGCY 6 cut(s) 121, 172, 185, 203, 268, 306
CviKI_1 RGCY 6 cut(s) 121, 172, 185, 203, 268, 306
DdeI CTNAG 2 cut(s) 173, 186
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 78
DseDI GACNNNNNNGTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaiI YATR 5 cut(s) 7, 9, 35, 279, 303
Fnu4HI GCNGC 2 cut(s) 183, 266
FokI GGATG 2 cut(s) 121, 190
Fsp4HI GCNGC 2 cut(s) 183, 266
FspBI CTAG 4 cut(s) 101, 204, 209, 307
GluI GCNGC 2 cut(s) 183, 266
HgaI GACGC 2 cut(s) 227, 292
Hin1I GRCGYC 1 cut(s) 284
HinfI GANTC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 64, 75
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 173, 186
Hsp92I GRCGYC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 103, 130, 144, 265
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 43
MaeI CTAG 4 cut(s) 101, 204, 209, 307
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 3 cut(s) 136, 139, 154
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 271
MnlI CCTC 3 cut(s) 67, 155, 168
MseI TTAA 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NdeII GATC 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 214, 249
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 184, 267
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 214, 249
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 2 cut(s) 183, 266
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 252
SetI ASST 5 cut(s) 102, 119, 205, 214, 244
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 182
SspMI CTAG 4 cut(s) 101, 204, 209, 307
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 64, 75
TaqI TCGA 3 cut(s) 30, 59, 147
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 265
TspRI CASTG 1 cut(s) 141
XspI CTAG 4 cut(s) 101, 204, 209, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.