Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001200.1

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

124855 .. 127299

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001200.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ctggatgaggagcttggcctgcactgcatcacaaatgagaaggacaaaggaagtgtaaggaagatgataatagcgagcttgtggggcatacaaactgatccctcaaaccgagcagcaatgaaggaagtgatagaaatgctggaaggaaatatggagtccttgaagatacgacctaagccttacttgtcttctccttcaaaatcccctacagtggcagattcttctactacattggtatcaatacaagagaactctgtatttgacttgttactttatagggttattctcacaaatgggacggggacggggaatccccagtatcttattacggggattggggagggtatgaggatgaagaatgaagtcggtgtgccccaaacttgtggtaacgtgcccatcaagtatcccttctatctcgacggacaacaggaatcgtattgcggctaccctggtttcgagctctactgcaatggaaacggcctcacactccctagtggcggtttcaggtccgcaacgattaacacaatcgattatgaaaaccacactgttcacttctcacacgatggtctttttgatcatgccggagattgtcttggatatttagaaaactttaccttgccaaatggttcgtacgagctggctccaaatcaaaaggaattcgttttgctctactattgcaactcttctttggttgatgagtcgttttcagagtacaagcttggctgctttgaccacaccagaacgaggacaacaattctggccctgaccaaggatgatccacagtacggaaatgcccttgacaagtgtggaaaagaacgggagacggttgaaggggtatatgccaatgttactggcaccgctgcaggaataagagaggggctgaaagcagggtttctggtaaactggtcagccagaaactgcagtctctgtgagaacagtggtgggaaatgtggaactagtgttgataagttcacgtgcttctgcccggataaacttcatgatttcttctgtcctgaagaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

341

Amino Acids

37.51

Weight (kDa)

4.98

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	854
AciI	CCGC	4 cut(s)	441, 498, 510, 858
AclWI	GGATC	2 cut(s)	92, 770
AcsI	RAATTY	1 cut(s)	656
AcvI	CACGTG	1 cut(s)	975
AfaI	GTAC	3 cut(s)	632, 713, 785
AfiI	CCNNNNNNNGG	6 cut(s)	211, 497, 744, 769, 785, 1019
AgsI	TTSAA	3 cut(s)	163, 198, 830
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	13, 78, 460, 637, 718
AluI	AGCT	5 cut(s)	13, 78, 460, 637, 718
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	815, 929
AlwI	GGATC	2 cut(s)	92, 770
AlwNI	CAGNNNCTG	2 cut(s)	918, 927
AoxI	GGCC	3 cut(s)	16, 478, 759
ApeKI	GCWGC	3 cut(s)	113, 723, 860
ApoI	RAATTY	1 cut(s)	656
AspS9I	GGNCC	2 cut(s)	507, 760
AsuC2I	CCSGG	1 cut(s)	986
AvaII	GGWCC	1 cut(s)	507
BaeGI	GKGCMC	2 cut(s)	375, 396
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	462
BbrPI	CACGTG	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	125, 710, 847
BccI	CCATC	2 cut(s)	404, 557
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	2 cut(s)	815, 929
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	492, 957
BfmI	CTRYAG	3 cut(s)	207, 861, 919
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	114, 442, 724, 861
BlsI	GCNGC	4 cut(s)	115, 443, 725, 862
Bme1390I	CCNGG	2 cut(s)	450, 986
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	507, 760
BmiI	GGNNCC	2 cut(s)	642, 856
BmrFI	CCNGG	2 cut(s)	450, 986
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	975
BsaJI	CCNNGG	2 cut(s)	448, 768
Bsc4I	CCNNNNNNNGG	6 cut(s)	211, 497, 744, 769, 785, 1019
Bse1I	ACTGG	3 cut(s)	316, 856, 908
Bse3DI	GCAATG	2 cut(s)	123, 475
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	448, 768
BseGI	GGATG	3 cut(s)	10, 357, 778
BseLI	CCNNNNNNNGG	6 cut(s)	211, 497, 744, 769, 785, 1019
BseMI	GCAATG	2 cut(s)	123, 475
BseNI	ACTGG	3 cut(s)	316, 856, 908
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	375, 396
BseXI	GCAGC	3 cut(s)	125, 710, 847
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	3 cut(s)	18, 480, 761
BshNI	GGYRCC	1 cut(s)	854
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	582, 986
BsiWI	CGTACG	1 cut(s)	630
BslFI	GGGAC	2 cut(s)	310, 316
BslI	CCNNNNNNNGG	6 cut(s)	211, 497, 744, 769, 785, 1019
BsmAI	GTCTC	2 cut(s)	815, 929
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	2 cut(s)	310, 316
BsnI	GGCC	3 cut(s)	18, 480, 761
Bsp1286I	GDGCHC	3 cut(s)	375, 396, 462
Bsp143I	GATC	3 cut(s)	97, 574, 775
BspACI	CCGC	4 cut(s)	441, 498, 510, 858
BspANI	GGCC	3 cut(s)	18, 480, 761
BspDI	ATCGAT	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	2 cut(s)	642, 856
BspMAI	CTGCAG	2 cut(s)	865, 923
BspPI	GGATC	2 cut(s)	92, 770
BspT107I	GGYRCC	1 cut(s)	854
BsrDI	GCAATG	2 cut(s)	123, 475
BsrI	ACTGG	3 cut(s)	316, 856, 908
BssECI	CCNNGG	2 cut(s)	448, 768
BssMI	GATC	3 cut(s)	97, 574, 775
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	5 cut(s)	211, 547, 783, 826, 938
Bst6I	CTCTTC	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	975
BstC8I	GCNNGC	3 cut(s)	20, 76, 639
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	2 cut(s)	767, 1017
BstF5I	GGATG	3 cut(s)	10, 357, 778
BstKTI	GATC	3 cut(s)	100, 577, 778
BstMAI	GTCTC	2 cut(s)	815, 929
BstMBI	GATC	3 cut(s)	97, 574, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 24, 84
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	448, 984
BstSFI	CTRYAG	3 cut(s)	207, 861, 919
BstSLI	GKGCMC	2 cut(s)	375, 396
BstV1I	GCAGC	3 cut(s)	125, 710, 847
BstV2I	GAAGAC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	18, 480, 761
BsuTUI	ATCGAT	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	10, 357, 778
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	4 cut(s)	22, 216, 543, 943
Cac8I	GCNNGC	3 cut(s)	20, 76, 639
CaiI	CAGNNNCTG	2 cut(s)	918, 927
CciI	TCATGA	1 cut(s)	997
Cfr13I	GGNCC	2 cut(s)	507, 760
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	3 cut(s)	631, 712, 784
CviAII	CATG	2 cut(s)	578, 998
CviQI	GTAC	3 cut(s)	631, 712, 784
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	99, 576, 777
DpnII	GATC	3 cut(s)	97, 574, 775
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	768
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	460
Eco72I	CACGTG	1 cut(s)	975
EcoICRI	GAGCTC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	2 cut(s)	767, 1017
EcoRI	GAATTC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	768
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	815
FaeI	CATG	2 cut(s)	581, 1001
FaiI	YATR	9 cut(s)	89, 152, 276, 347, 534, 579, 838, 840, 999
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 392, 424
FaqI	GGGAC	2 cut(s)	310, 316
FatI	CATG	2 cut(s)	577, 997
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	114, 442, 724, 861
FokI	GGATG	3 cut(s)	17, 364, 785
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	4 cut(s)	114, 442, 724, 861
FspBI	CTAG	2 cut(s)	492, 957
GluI	GCNGC	4 cut(s)	114, 442, 724, 861
HaeIII	GGCC	3 cut(s)	18, 480, 761
HapII	CCGG	2 cut(s)	582, 986
Hin1II	CATG	2 cut(s)	581, 1001
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	5 cut(s)	155, 218, 310, 431, 698
HpaII	CCGG	2 cut(s)	582, 986
Hpy166II	GTNNAC	3 cut(s)	550, 901, 972
Hpy188I	TCNGA	1 cut(s)	709
Hpy188III	TCNNGA	3 cut(s)	416, 998, 1013
Hpy8I	GTNNAC	3 cut(s)	550, 901, 972
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	7 cut(s)	34, 115, 137, 204, 418, 824, 1013
HpyCH4III	ACNGT	5 cut(s)	211, 547, 783, 826, 938
HpyCH4IV	ACGT	2 cut(s)	390, 974
HpyCH4V	TGCA	6 cut(s)	22, 27, 468, 678, 863, 921
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 24, 84
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	390, 974
Hsp92II	CATG	2 cut(s)	581, 1001
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	97, 574, 775
LmnI	GCTCC	2 cut(s)	10, 646
Lsp1109I	GCAGC	3 cut(s)	125, 710, 847
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	492, 957
MaeII	ACGT	2 cut(s)	390, 974
MaeIII	GTNAC	3 cut(s)	267, 386, 847
MalI	GATC	3 cut(s)	99, 576, 777
MboI	GATC	3 cut(s)	97, 574, 775
MboII	GAAGA	7 cut(s)	73, 175, 180, 213, 367, 675, 997
MhlI	GDGCHC	3 cut(s)	375, 396, 462
MluCI	AATT	2 cut(s)	656, 753
MlyI	GAGTC	2 cut(s)	164, 707
MnlI	CCTC	6 cut(s)	112, 334, 342, 491, 738, 868
MseI	TTAA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	582, 986
MspR9I	CCNGG	2 cut(s)	450, 986
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	19, 24, 84
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	3 cut(s)	97, 574, 775
NlaIII	CATG	2 cut(s)	581, 1001
NlaIV	GGNNCC	2 cut(s)	642, 856
PagI	TCATGA	1 cut(s)	997
PfeI	GAWTC	3 cut(s)	218, 310, 431
Pfl23II	CGTACG	1 cut(s)	630
PkrI	GCNGC	4 cut(s)	115, 443, 725, 862
PleI	GAGTC	2 cut(s)	163, 706
PmaCI	CACGTG	1 cut(s)	975
PmlI	CACGTG	1 cut(s)	975
PpsI	GAGTC	2 cut(s)	163, 706
Ppu21I	YACGTR	1 cut(s)	975
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	448
PspCI	CACGTG	1 cut(s)	975
PspGI	CCWGG	1 cut(s)	448
PspLI	CGTACG	1 cut(s)	630
PspN4I	GGNNCC	2 cut(s)	642, 856
PspPI	GGNCC	2 cut(s)	507, 760
PstI	CTGCAG	2 cut(s)	865, 923
PstNI	CAGNNNCTG	2 cut(s)	918, 927
RsaI	GTAC	3 cut(s)	632, 713, 785
RsaNI	GTAC	3 cut(s)	631, 712, 784
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	114, 442, 724, 861
Sau3AI	GATC	3 cut(s)	97, 574, 775
Sau96I	GGNCC	2 cut(s)	507, 760
SchI	GAGTC	2 cut(s)	164, 707
ScrFI	CCNGG	2 cut(s)	450, 986
SduI	GDGCHC	3 cut(s)	375, 396, 462
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	3 cut(s)	207, 861, 919
SinI	GGWCC	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	956
Sse9I	AATT	2 cut(s)	656, 753
SsiI	CCGC	4 cut(s)	441, 498, 510, 858
SspMI	CTAG	2 cut(s)	492, 957
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	448, 984
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	5 cut(s)	211, 547, 783, 826, 938
TaiI	ACGT	2 cut(s)	393, 977
TaqI	TCGA	3 cut(s)	417, 456, 528
TasI	AATT	2 cut(s)	656, 753
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	3 cut(s)	218, 310, 431
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	4 cut(s)	29, 216, 550, 943
TseI	GCWGC	3 cut(s)	113, 723, 860
TspDTI	ATGAA	5 cut(s)	134, 368, 375, 549, 986
TspGWI	ACGGA	2 cut(s)	435, 801
TspRI	CASTG	4 cut(s)	29, 216, 550, 943
VpaK11BI	GGWCC	1 cut(s)	507
XagI	CCTNNNNNAGG	2 cut(s)	767, 1017
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	2 cut(s)	492, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.