RchiOBHm_Chr7g0185981

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
6018211 .. 6026035
7825 bp
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UTR
Exon/CDS
Intron
PRQ16602

Sequence Viewer

Length: 399 bp
ATGGAGAGGACTTTGTTAATGAGGTTGCGAGCATACTATGTTAATGTTGTCACTCTTTTGGGGTATTGCTTTGAAGGTAGGAAAAAAGCGCTCGTATATGAGTTTGTGCCCAATGGATCACTAGAGAAGTTCATATATACAGACAGTAATCCTTTGAAAACTACTCCACACTTGGAATCGGAAAGACTCTTTCAAATTTCTATTGGCATAGCTCAAGGGCTGGAGTACTTGCACCGTGAGTGCAACACAAGAATGCTGCACTTTGACATAAAACTACATAATATCCTTTTGGATGAAAACTTTTTCCCAAAGATTTCTGACTTTGGTCTTTCTAAACTTTGTACAATGAAGGAGAGCATTATTTCAATGTTGGATGCTAGAGGGACAAAGGGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

8.44

Isoelectric Point (pI)

19.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 123 6.9e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 12 - 118 8.8e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 2 cut(s) 227, 343
AfeI AGCGCT 1 cut(s) 90
AgsI TTSAA 4 cut(s) 74, 157, 194, 366
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 243
BfaI CTAG 2 cut(s) 122, 378
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 227
BmsI GCATC 1 cut(s) 364
BoxI GACNNNNGTC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 198
BseGI GGATG 2 cut(s) 298, 379
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 242
BsmI GAATGC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 341
Bsp143I GATC 1 cut(s) 116
BspPI GGATC 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 341
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 146, 236
BstAUI TGTACA 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 2 cut(s) 298, 379
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstPAI GACNNNNGTC 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 298, 379
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 226, 342
CviJI RGCY 2 cut(s) 212, 220
CviKI_1 RGCY 2 cut(s) 212, 220
CviQI GTAC 2 cut(s) 226, 342
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 305, 386
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 2 cut(s) 122, 378
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 92
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 2 cut(s) 176, 186
Hpy188I TCNGA 2 cut(s) 181, 319
HpyAV CCTTC 2 cut(s) 68, 343
HpyCH4III ACNGT 2 cut(s) 146, 236
HpyCH4V TGCA 3 cut(s) 232, 243, 259
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 122, 378
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 2 cut(s) 15, 374
MseI TTAA 2 cut(s) 17, 42
MslI CAYNNNNRTG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 258
NdeII GATC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 49
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 324
RsaI GTAC 2 cut(s) 227, 343
RsaNI GTAC 2 cut(s) 226, 342
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 2 cut(s) 17, 42
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 180
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 26, 79, 214
SfaNI GCATC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 1 cut(s) 195
SspMI CTAG 2 cut(s) 122, 378
TaaI ACNGT 2 cut(s) 146, 236
TasI AATT 1 cut(s) 195
TatI WGTACW 2 cut(s) 225, 341
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 17, 42
Tru9I TTAA 2 cut(s) 17, 42
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 121, 309, 362
XapI RAATTY 1 cut(s) 195
XspI CTAG 2 cut(s) 122, 378
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.