Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

37942311 .. 37942634

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAATTATCACAAGATACTCCTATGCTGATATAAAGAAGATGACAAATGGATTCAAGAAGAAGTTGGGTGAAGGAGGTTTTGGAAGTGTTTTCAGTGGAAAGCTTCCGAGTAATGGAGTTCCGGTAGCCATAAAAGTCCTCAAGGATTCAGAAGGAAATGGAGATGATTTTGTCAATGAAGTAGGAACGATTGGTAGGATTCACCATGTAAACGTGGTTCGCCTGCTTGGGTGTTCAGCTGAAGCAGGCAAGCGTGTTCTTATTTATGAATACATGCCAAACAGTTCTCTGGAGAAGTTTATTGTCACGCCCCGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

9.59

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	19 - 103	4.8e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	20 - 103	1.5e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	106, 242
AluI	AGCT	2 cut(s)	106, 242
ApoI	RAATTY	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	83, 197
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	227, 250, 254
BstNSI	RCATGY	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	227, 250, 254
CviAII	CATG	2 cut(s)	209, 277
CviJI	RGCY	3 cut(s)	106, 131, 242
CviKI_1	RGCY	3 cut(s)	106, 131, 242
Eco57I	CTGAAG	1 cut(s)	264
FaeI	CATG	2 cut(s)	212, 280
FaiI	YATR	6 cut(s)	27, 35, 134, 210, 270, 278
FatI	CATG	2 cut(s)	208, 276
GsuI	CTGGAG	1 cut(s)	314
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	2 cut(s)	212, 280
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	54, 149, 202
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	83, 197
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	111, 154
Hpy188III	TCNNGA	2 cut(s)	58, 293
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	68, 149
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	212, 280
LpnPI	CCDG	4 cut(s)	138, 234, 239, 278
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	52, 73
MluCI	AATT	2 cut(s)	6, 318
MnlI	CCTC	2 cut(s)	71, 152
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	125
NlaIII	CATG	2 cut(s)	212, 280
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	54, 149, 202
PsrI	GAACNNNNNNTAC	2 cut(s)	204, 236
PvuII	CAGCTG	1 cut(s)	242
SetI	ASST	4 cut(s)	82, 108, 219, 244
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	6, 318
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	219
TasI	AATT	2 cut(s)	6, 318
TfiI	GAWTC	3 cut(s)	54, 149, 202
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	17, 195, 285
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	318
XceI	RCATGY	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.