Rroxscaffold_7G00172470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001240
Physical Location & Seq
Forward (+)
12699411 .. 12702212
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172470.1

Sequence Viewer

Length: 303 bp
ATGGCTTCAAGAAGGTGGCTGAAGACTGAAGAAAAGAGTACACGGCATGACGATCATGAACATGATTACTTTTTCCCAGTGATGTTGTTTGGCTCCGCTTTGCTGCACCGGTCAACGATCTTTTCTCGTGCGGGAGTGCCAAGACCGTTCGGGGTGCGGTCGTTGGGGGTGTCCCTTGACCTGACTTCTTTTGAGCGATTGTGGACGAGGAGAGCACCAACCTCGTCGTGGGATTCTTTATGCCTCGTGGTGAGGACTTTTGCTAATCTTCTCGCGTCACCAAATCGATACTCGACGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.53

Weight (kDa)

10.36

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 299
AccII CGCG 1 cut(s) 275
AciI CCGC 3 cut(s) 96, 131, 157
AcuI CTGAAG 2 cut(s) 41, 48
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 228
AgeI ACCGGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 103
AsiGI ACCGGT 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 262, 270
BauI CACGAG 2 cut(s) 126, 245
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 161
BshTI ACCGGT 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 52, 117
BspACI CCGC 3 cut(s) 96, 131, 157
BspDI ATCGAT 1 cut(s) 286
BspFNI CGCG 1 cut(s) 275
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 108
BssMI GATC 2 cut(s) 52, 117
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 2 cut(s) 126, 245
Bst2BI CACGAG 2 cut(s) 126, 245
Bst4CI ACNGT 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 296
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 2 cut(s) 55, 120
BstMBI GATC 2 cut(s) 52, 117
BstMCI CGRYCG 1 cut(s) 161
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 286
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 39
CspAI ACCGGT 1 cut(s) 108
CviAII CATG 3 cut(s) 47, 56, 62
CviJI RGCY 3 cut(s) 5, 19, 93
CviKI_1 RGCY 3 cut(s) 5, 19, 93
CviQI GTAC 1 cut(s) 39
DpnI GATC 2 cut(s) 54, 119
DpnII GATC 2 cut(s) 52, 117
Eco57I CTGAAG 2 cut(s) 41, 48
FaeI CATG 3 cut(s) 50, 59, 65
FaiI YATR 4 cut(s) 48, 57, 63, 241
FaqI GGGAC 1 cut(s) 157
FatI CATG 3 cut(s) 46, 55, 61
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
HapII CCGG 1 cut(s) 109
HgaI GACGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 3 cut(s) 50, 59, 65
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 109
HphI GGTGA 2 cut(s) 262, 270
Hpy166II GTNNAC 3 cut(s) 41, 114, 204
Hpy188III TCNNGA 2 cut(s) 9, 56
Hpy8I GTNNAC 3 cut(s) 41, 114, 204
Hpy99I CGWCG 3 cut(s) 229, 298, 301
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 3 cut(s) 50, 59, 65
Kzo9I GATC 2 cut(s) 52, 117
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 90, 122, 194
Lsp1109I GCAGC 1 cut(s) 90
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 54, 119
MboI GATC 2 cut(s) 52, 117
MboII GAAGA 3 cut(s) 34, 41, 260
MhlI GDGCHC 1 cut(s) 217
MnlI CCTC 4 cut(s) 201, 232, 246, 254
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 275
NdeII GATC 2 cut(s) 52, 117
NlaIII CATG 3 cut(s) 50, 59, 65
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 276
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 108
PkrI GCNGC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 60
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 2 cut(s) 52, 117
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 17, 183, 224, 299
SmiMI CAYNNNNRTG 1 cut(s) 60
SsiI CCGC 3 cut(s) 96, 131, 157
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 286, 293
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
ZraI GACGTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.