Rh7AG054700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001240
Physical Location & Seq
Reverse (-)
3800883 .. 3801305
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG054700.1

Sequence Viewer

Length: 423 bp
ATGAAGACGGTGGTCCTTGCCGCCCTCGTACAATGTGCCAGACTCACTCCGGTGTCAGCTTTCTCCCTATGGTATTTTTATGGTTGGTCTTGGCTCCGATCTGTTATTGTAGATCCGATCCTGAGGGAGAAGGATTTTGCTAATGAGTGCCTGACCTTTTGGGATGATGATGGTGGGACGGCATATGCTATTTCGGTGTGGCGTCCCGGTGATTTGGCTAGACGGTGGAGTGTTGATGTTGGTGGAATCGATATTTCTATCCCTGATTTTGACGCCTTGCGACGGTTGGGTCGTGGTGGCAATGACGACCTAGTTTGGATGGAAACCTGGCTGAGGAAGAAAGCAGTGTGGAAGATTGCCAGCATTACAGGAGGAACCTGGTTGAGGATGGCGGCTGAGATGAGTGGCGGAGCTATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.76

Weight (kDa)

5.43

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 288
AciI CCGC 3 cut(s) 21, 392, 408
AclWI GGATC 2 cut(s) 107, 112
AcyI GRCGYC 2 cut(s) 202, 273
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 282, 333, 384
AjnI CCWGG 2 cut(s) 326, 377
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 2 cut(s) 59, 413
AluI AGCT 2 cut(s) 59, 413
AlwI GGATC 2 cut(s) 107, 112
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 332
BccI CCATC 3 cut(s) 164, 313, 382
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 2 cut(s) 328, 379
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 3 cut(s) 219, 311, 421
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 2 cut(s) 21, 393
BlsI GCNGC 2 cut(s) 22, 394
Bme1390I CCNGG 3 cut(s) 207, 328, 379
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 95, 376
BmrFI CCNGG 3 cut(s) 207, 328, 379
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 249
BsaHI GRCGYC 2 cut(s) 202, 273
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 333, 384
Bse21I CCTNAGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 328, 379
BseCI ATCGAT 1 cut(s) 249
BseGI GGATG 3 cut(s) 169, 324, 393
BseLI CCNNNNNNNGG 3 cut(s) 282, 333, 384
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 113, 323, 387
BshVI ATCGAT 1 cut(s) 249
BsiSI CCGG 2 cut(s) 50, 207
BslFI GGGAC 2 cut(s) 189, 190
BslI CCNNNNNNNGG 3 cut(s) 282, 333, 384
BsmFI GGGAC 2 cut(s) 189, 190
Bsp143I GATC 3 cut(s) 98, 112, 117
BspACI CCGC 3 cut(s) 21, 392, 408
BspCNI CTCAG 3 cut(s) 114, 324, 388
BspDI ATCGAT 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 95, 376
BspPI GGATC 2 cut(s) 107, 112
BsrDI GCAATG 1 cut(s) 307
BssMI GATC 3 cut(s) 98, 112, 117
BssNI GRCGYC 2 cut(s) 202, 273
Bst2UI CCWGG 2 cut(s) 328, 379
Bst4CI ACNGT 3 cut(s) 10, 225, 285
BstACI GRCGYC 2 cut(s) 202, 273
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 122, 332, 396
BstENI CCTNNNNNAGG 2 cut(s) 331, 382
BstF5I GGATG 3 cut(s) 169, 324, 393
BstKTI GATC 3 cut(s) 101, 115, 120
BstMBI GATC 3 cut(s) 98, 112, 117
BstNI CCWGG 2 cut(s) 328, 379
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 205, 326, 377
BstSFI CTRYAG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 3 cut(s) 169, 324, 393
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 249
CseI GACGC 2 cut(s) 191, 281
CsiI ACCWGGT 1 cut(s) 377
Csp6I GTAC 1 cut(s) 29
CviJI RGCY 6 cut(s) 59, 94, 218, 331, 395, 413
CviKI_1 RGCY 6 cut(s) 59, 94, 218, 331, 395, 413
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 3 cut(s) 122, 332, 396
DpnI GATC 3 cut(s) 100, 114, 119
DpnII GATC 3 cut(s) 98, 112, 117
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 122
EcoNI CCTNNNNNAGG 2 cut(s) 331, 382
EcoRII CCWGG 2 cut(s) 326, 377
FaiI YATR 5 cut(s) 70, 81, 184, 186, 416
FaqI GGGAC 2 cut(s) 189, 190
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 21, 393
FokI GGATG 3 cut(s) 176, 331, 400
Fsp4HI GCNGC 2 cut(s) 21, 393
FspBI CTAG 3 cut(s) 219, 311, 421
GluI GCNGC 2 cut(s) 21, 393
HapII CCGG 2 cut(s) 50, 207
HgaI GACGC 2 cut(s) 191, 281
Hin1I GRCGYC 2 cut(s) 202, 273
HinfI GANTC 2 cut(s) 42, 246
HpaII CCGG 2 cut(s) 50, 207
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 98, 117
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 10, 225, 285
HpyF3I CTNAG 3 cut(s) 122, 332, 396
Hsp92I GRCGYC 2 cut(s) 202, 273
Kzo9I GATC 3 cut(s) 98, 112, 117
LmnI GCTCC 2 cut(s) 99, 410
MabI ACCWGGT 1 cut(s) 377
MaeI CTAG 3 cut(s) 219, 311, 421
MalI GATC 3 cut(s) 100, 114, 119
MboI GATC 3 cut(s) 98, 112, 117
MboII GAAGA 3 cut(s) 16, 349, 364
MflI RGATCY 1 cut(s) 112
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 5 cut(s) 35, 117, 327, 365, 378
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 2 cut(s) 50, 207
MspR9I CCNGG 3 cut(s) 207, 328, 379
MvaI CCWGG 2 cut(s) 328, 379
NciI CCSGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 98, 112, 117
NlaIV GGNNCC 2 cut(s) 95, 376
OliI CACNNNNGTG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 2 cut(s) 22, 394
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 326, 377
PspGI CCWGG 2 cut(s) 326, 377
PspN4I GGNNCC 2 cut(s) 95, 376
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 2 cut(s) 21, 393
Sau3AI GATC 3 cut(s) 98, 112, 117
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 207, 328, 379
SetI ASST 6 cut(s) 61, 158, 312, 329, 380, 415
SexAI ACCWGGT 1 cut(s) 377
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 50
SsiI CCGC 3 cut(s) 21, 392, 408
SspMI CTAG 3 cut(s) 219, 311, 421
StyD4I CCNGG 3 cut(s) 205, 326, 377
TaaI ACNGT 3 cut(s) 10, 225, 285
TaqI TCGA 1 cut(s) 249
TauI GCSGC 2 cut(s) 23, 395
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 13
XagI CCTNNNNNAGG 2 cut(s) 331, 382
XspI CTAG 3 cut(s) 219, 311, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.