RLG00000008628

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
33669409 .. 33672958
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008628

Sequence Viewer

Length: 2910 bp
ATGTCACCTCCCCCACCATCGCCTTCACCACCTCCTCCTTATGTCTACAAGTCACCTCCCCCACCATCGCCTTCACCACCACCTCCTTACGTCTACAAGTCACCCCCTCCACCATCGCCTTCTCCACCACCGCCGTATGTGTACAAGTCTCCTCCACCTCCCTCGCCTAAATTGCCTCCGTACGAGTACAAGTCACCACCACCTCCATCACCTTCTCCCCCACCGCCATACGTCTACAAGTCTCCACCACCTCCTTCCCCATCTCCACCACCACCTTACTACTACAAATCTCCTCCACCTCCAGAACATTCTCCACCACCACCTTACTATTACAAATCTCCTCCACCTCCAGAACATTCTCCACCACCACCTTACTACTATAAGTCTCCTCCTCCACCTTCTCCCTCACCACCACCACCATACTACTACAAGTCCCCGCCACCTCCTTCTCCCTCACCTCCTCCGCCATACATCTACAAATCCCCTCCACCACCTTCCCCATCTCCTCCTCCACCATACTACTACAAGTCTCCTCCACCACCATCACCAAAGCCGTACGTGTACAAGTCTCCGCCGCCACCATCGCCGAAGCCTTACTATTACCAATCTCCTCCACCACCGGCTCCGTACTATCCACACCCACACCCCCACCACCAGCCATTGATCGTCAAGGTCGTCGGAAAGGTCTACTGCTACAGATGCTACGACTGGGGATATCCAATCAAGTCTCACGACAAGAAACATCTCGAAGGCGCTGTTGTTGAGATCACATGCTGGGCAGGCAAAAAGGCGATCATGGCTTACGGTAAAACCAAGAACAACGGTAAATTCAGCGTCGCAGTCGAAGATTTTGACTACGGTAAATATGGTGCCAAGGCTTGTACCGCGAAGCTCCACATGGCACCCAAGGGTTCACTTTGCAGCATTCCAACTCCTCTCAACTGGGGCGACAAGGGAGCCACGCTGAAGGTCAAGTCCAAGAACAATTGGGAGGTTGTGCTCAAGGCCAAGCCCTTTGCTTTCGCTCCAAAGACTCCTTACGAGGAGTGTGCTAAGCCCGCTCCACACCATCCTTCTCCTTACGTCTACAAGTCGCCGCCTCCACCAACCCCGACTTACGTCTACAAGTCTCCTCCTCCACCGTCGCCAAAGTACATTTACAAGTCCCCACCACCGCCGGCTTACTACTACAGGTCACCACCACCACCATCACCAAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCGCCACCACCATCTCCCAAGCCGTACGTGTACAAGTCTCCTCCACCACCATCACCGAAGCCGTACGTGTACAAGTCTCCACCACCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCGCCACCACCATCTCCCAAGCCGTACGTCTACAAGTCTCCTCCACCACCATCACCGAAGCCATACGTGTACAAGTCGCCGCCACCGCCATCACCAAAGCCGTATGTGTACAAGTCTCCACCACCACCATCCCCCAAGCCGTACGTGTACAAGTCTCCTCCACCACCATCTCCCAAGCCGTACTTGTACAAGTCTCCTCCACCACCATCACCGAAGCCGTACGTGTACAAGTCTCCACCGCCACCACCACCAAAGTACTACTACAAGTCTCCCCCCCCACCGACTTACTACTACAAGTCACCACCACCACCCACATACATCTACAAGTCACCACCACCACCATCACCGAAGCCATACATGTACAAGTCTCCACCACCACCACCACCAAAGTACTACTACAAGTCTCCACCGCCACCGACTTACGTATACAAGTCACCACCACCACCCACATACATCTACAAGTCACCACCACCACCATCACCTACACCCTACGTGTACAAGTCTCCACCACCACCACCACCAAAGTACTACTACAAGTCACCACCGCCACCGACTTATATCTACAAGTCACCTCCACCACCAGCATATATCTACAAGTCACCACCACCACCACATTCTCACCCTCACCCACCATACATTTACAAGTCTCCACCACCACCTTCACCATCTCCTCCTCCTCCATACTACTACAAGTCCCCACCACCACCATCCCCATCACCACCACCACCATACTACTACAAGTCTCCTCCACCTCCATCACCTTCTCCTCCACCTCCATACTACTACAAATCACCACCACCTCCATCACCCTCTCCCCCACCTCCATACTACTACAAATCTCCCCCTCCACCATCACCTTCTCCTCCTCCACCTTATATCTACAAGTCTCCCCCACCACCGTCACCCTCTCCTCCCCCTCCATACTACTACAAATCTCCCCCTCCACCCTCACCATCTCCTCCTCCACCATACGTGTACAAGTCCCCTCCTCCTCCCTCACCCTCACCTCCACCACCATATTTATACAAATCTCCACCACCACCATACCACTACACCTCCCCGCCGCCACCTTCCCCATCTCCTCCACCACCATACCACTACACCTCACCACCACCACCCTCTCCATCTCCTCCCCCACCATACCAATACAAGTCTCCACCTCCTCCACCCATGGAACCAAAGCCAACTCCTCCCTACCATTACACATCTCCACCACCACCGTCGCCATCTCCTCCTCCACCATACCACTACACCTCCCCACCTCCACCTTCCCCATCTCCTCCCTACCATTACACATCTCCACCACCACCGTCGCCATCTCCTCCTCCACCATACCACTACACCTCCCCACCTCCTCCTTCCCCATCTCCTCCTCCACCATACGCTTACAAGTCTCCACCACCTCCTTCACCTTCTCCTCCTCCTCCCTACGTCTACAAGTCACCTCCACCTCCGGTGAAATCTCCTCCACCACCGGTGTACATTTACGCCTCTCCCCCACCACCCACTCACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

970

Amino Acids

106.99

Weight (kDa)

9.65

Isoelectric Point (pI)

141.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 225 - 319 1.2e-15 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 869, 901
AccBSI CCGCTC 1 cut(s) 1061
AccII CGCG 1 cut(s) 887
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 1 cut(s) 986
AgeI ACCGGT 1 cut(s) 2866
AluBI AGCT 1 cut(s) 892
AluI AGCT 1 cut(s) 892
Alw21I GWGCWC 1 cut(s) 1002
AoxI GGCC 1 cut(s) 1005
ApeKI GCWGC 1 cut(s) 921
ApoI RAATTY 1 cut(s) 827
AsiGI ACCGGT 1 cut(s) 2866
AspLEI GCGC 1 cut(s) 755
BanI GGYRCC 2 cut(s) 869, 901
Bbv12I GWGCWC 1 cut(s) 1002
BbvI GCAGC 1 cut(s) 933
BcgI CGANNNNNNTGC 2 cut(s) 1031, 1065
BfmI CTRYAG 2 cut(s) 694, 1189
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 5 cut(s) 575, 922, 1097, 1472, 2456
BlpI GCTNAGC 1 cut(s) 1053
BlsI GCNGC 5 cut(s) 576, 923, 1098, 1473, 2457
BmcAI AGTACT 3 cut(s) 1649, 1784, 1919
BmiI GGNNCC 5 cut(s) 624, 871, 903, 958, 2568
BmrI ACTGGG 2 cut(s) 718, 952
BmsI GCATC 1 cut(s) 689
BmuI ACTGGG 2 cut(s) 718, 952
BoxI GACNNNNGTC 1 cut(s) 1118
BpmI CTGGAG 2 cut(s) 285, 333
Bpu1102I GCTNAGC 1 cut(s) 1053
BpuEI CTTGAG 1 cut(s) 986
BsaJI CCNNGG 3 cut(s) 873, 906, 2562
BsaWI WCCGGW 2 cut(s) 2845, 2866
BsaXI ACNNNNNCTCC 6 cut(s) 2432, 2462, 2630, 2660, 2720, 2750
Bse118I RCCGGY 3 cut(s) 619, 1177, 2866
Bse1I ACTGG 2 cut(s) 713, 947
BseDI CCNNGG 3 cut(s) 873, 906, 2562
BseGI GGATG 3 cut(s) 1069, 1520, 2099
BseNI ACTGG 2 cut(s) 713, 947
BseXI GCAGC 1 cut(s) 933
BseYI CCCAGC 1 cut(s) 774
Bsh1236I CGCG 1 cut(s) 887
BshFI GGCC 1 cut(s) 1007
BshNI GGYRCC 2 cut(s) 869, 901
BshTI ACCGGT 1 cut(s) 2866
BsiHKAI GWGCWC 1 cut(s) 1002
BsiSI CCGG 4 cut(s) 620, 1178, 2846, 2867
BslFI GGGAC 4 cut(s) 418, 1150, 2071, 2359
BsmFI GGGAC 4 cut(s) 418, 1150, 2071, 2359
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 1007
Bsp1286I GDGCHC 1 cut(s) 1002
Bsp143I GATC 3 cut(s) 663, 765, 792
Bsp1720I GCTNAGC 1 cut(s) 1053
Bsp19I CCATGG 1 cut(s) 2562
BspANI GGCC 1 cut(s) 1007
BspFNI CGCG 1 cut(s) 887
BspLI GGNNCC 5 cut(s) 624, 871, 903, 958, 2568
BspT107I GGYRCC 2 cut(s) 869, 901
BsrBI CCGCTC 1 cut(s) 1061
BsrFI RCCGGY 3 cut(s) 619, 1177, 2866
BsrI ACTGG 2 cut(s) 713, 947
BssAI RCCGGY 3 cut(s) 619, 1177, 2866
BssECI CCNNGG 3 cut(s) 873, 906, 2562
BssMI GATC 3 cut(s) 663, 765, 792
BssNAI GTATAC 1 cut(s) 1819
BssT1I CCWWGG 3 cut(s) 873, 906, 2562
Bst1107I GTATAC 1 cut(s) 1819
Bst4CI ACNGT 7 cut(s) 806, 824, 860, 1143, 2292, 2613, 2703
BstC8I GCNNGC 3 cut(s) 781, 1059, 1179
BstDEI CTNAG 1 cut(s) 1053
BstDSI CCRYGG 1 cut(s) 2562
BstEII GGTNACC 1 cut(s) 1194
BstF5I GGATG 3 cut(s) 1069, 1520, 2099
BstFNI CGCG 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 3 cut(s) 666, 768, 795
BstMBI GATC 3 cut(s) 663, 765, 792
BstMWI GCNNNNNNNGC 8 cut(s) 172, 583, 699, 780, 797, 884, 1058, 1477
BstNSI RCATGY 2 cut(s) 774, 1753
BstPAI GACNNNNGTC 1 cut(s) 1118
BstPI GGTNACC 1 cut(s) 1194
BstSFI CTRYAG 2 cut(s) 694, 1189
BstSNI TACGTA 1 cut(s) 1816
BstUI CGCG 1 cut(s) 887
BstV1I GCAGC 1 cut(s) 933
BstZ17I GTATAC 1 cut(s) 1819
BsuRI GGCC 1 cut(s) 1007
BtgI CCRYGG 1 cut(s) 2562
BtgZI GCGATG 4 cut(s) 3, 51, 99, 567
BtsCI GGATG 3 cut(s) 1069, 1520, 2099
Cac8I GCNNGC 3 cut(s) 781, 1059, 1179
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 3 cut(s) 619, 1177, 2866
CseI GACGC 1 cut(s) 823
CspAI ACCGGT 1 cut(s) 2866
CviAII CATG 5 cut(s) 771, 796, 898, 1750, 2563
DdeI CTNAG 1 cut(s) 1053
DpnI GATC 3 cut(s) 665, 767, 794
DpnII GATC 3 cut(s) 663, 765, 792
EciI GGCGGA 4 cut(s) 453, 561, 1266, 1383
Eco105I TACGTA 1 cut(s) 1816
Eco130I CCWWGG 3 cut(s) 873, 906, 2562
Eco32I GATATC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 986
Eco91I GGTNACC 1 cut(s) 1194
EcoO65I GGTNACC 1 cut(s) 1194
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 3 cut(s) 873, 906, 2562
ErhI CCWWGG 3 cut(s) 873, 906, 2562
FaeI CATG 5 cut(s) 774, 799, 901, 1753, 2566
FalI AAGNNNNNCTT 2 cut(s) 1559, 1591
FaqI GGGAC 4 cut(s) 418, 1150, 2071, 2359
FatI CATG 5 cut(s) 770, 795, 897, 1749, 2562
FauI CCCGC 3 cut(s) 444, 1066, 2460
Fnu4HI GCNGC 5 cut(s) 575, 922, 1097, 1472, 2456
FokI GGATG 3 cut(s) 1056, 1507, 2086
Fsp4HI GCNGC 5 cut(s) 575, 922, 1097, 1472, 2456
GlaI GCGC 1 cut(s) 754
GluI GCNGC 5 cut(s) 575, 922, 1097, 1472, 2456
GsaI CCCAGC 1 cut(s) 778
GsuI CTGGAG 2 cut(s) 285, 333
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 1 cut(s) 1007
HapII CCGG 4 cut(s) 620, 1178, 2846, 2867
HgaI GACGC 1 cut(s) 823
HhaI GCGC 1 cut(s) 755
Hin1II CATG 5 cut(s) 774, 799, 901, 1753, 2566
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 1 cut(s) 1033
HpaII CCGG 4 cut(s) 620, 1178, 2846, 2867
Hpy188I TCNGA 1 cut(s) 680
Hpy188III TCNNGA 4 cut(s) 302, 350, 731, 746
Hpy99I CGWCG 5 cut(s) 680, 839, 1147, 2617, 2707
HpyCH4III ACNGT 7 cut(s) 806, 824, 860, 1143, 2292, 2613, 2703
HpyCH4V TGCA 1 cut(s) 921
HpyF10VI GCNNNNNNNGC 8 cut(s) 172, 583, 699, 780, 797, 884, 1058, 1477
HpyF3I CTNAG 1 cut(s) 1053
Hsp92II CATG 5 cut(s) 774, 799, 901, 1753, 2566
HspAI GCGC 1 cut(s) 753
KroI GCCGGC 1 cut(s) 1177
KroNI GCCGGC 1 cut(s) 1179
Kzo9I GATC 3 cut(s) 663, 765, 792
LmnI GCTCC 5 cut(s) 628, 897, 956, 1030, 1066
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 1 cut(s) 689
MalI GATC 3 cut(s) 665, 767, 794
MbiI CCGCTC 1 cut(s) 1061
MboI GATC 3 cut(s) 663, 765, 792
MboII GAAGA 1 cut(s) 857
MfeI CAATTG 1 cut(s) 985
MhlI GDGCHC 1 cut(s) 1002
MluCI AATT 3 cut(s) 170, 827, 985
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 2 cut(s) 658, 953
MroNI GCCGGC 1 cut(s) 1177
MspI CCGG 4 cut(s) 620, 1178, 2846, 2867
MunI CAATTG 1 cut(s) 985
Mva1269I GAATGC 1 cut(s) 924
MvnI CGCG 1 cut(s) 887
MwoI GCNNNNNNNGC 8 cut(s) 172, 583, 699, 780, 797, 884, 1058, 1477
NaeI GCCGGC 1 cut(s) 1179
NcoI CCATGG 1 cut(s) 2562
NdeII GATC 3 cut(s) 663, 765, 792
NgoMIV GCCGGC 1 cut(s) 1177
NlaIII CATG 5 cut(s) 774, 799, 901, 1753, 2566
NlaIV GGNNCC 5 cut(s) 624, 871, 903, 958, 2568
NspI RCATGY 2 cut(s) 774, 1753
PciI ACATGT 1 cut(s) 1749
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PctI GAATGC 1 cut(s) 924
PdiI GCCGGC 1 cut(s) 1179
PinAI ACCGGT 1 cut(s) 2866
PkrI GCNGC 5 cut(s) 576, 923, 1098, 1473, 2457
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PscI ACATGT 1 cut(s) 1749
PshAI GACNNNNGTC 1 cut(s) 1118
PspEI GGTNACC 1 cut(s) 1194
PspFI CCCAGC 1 cut(s) 774
PspN4I GGNNCC 5 cut(s) 624, 871, 903, 958, 2568
SatI GCNGC 5 cut(s) 575, 922, 1097, 1472, 2456
Sau3AI GATC 3 cut(s) 663, 765, 792
ScaI AGTACT 3 cut(s) 1649, 1784, 1919
SchI GAGTC 1 cut(s) 1027
SduI GDGCHC 1 cut(s) 1002
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 2 cut(s) 694, 1189
SgrAI CRCCGGYG 1 cut(s) 2866
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
SnaBI TACGTA 1 cut(s) 1816
Sse9I AATT 3 cut(s) 170, 827, 985
StyI CCWWGG 3 cut(s) 873, 906, 2562
TaaI ACNGT 7 cut(s) 806, 824, 860, 1143, 2292, 2613, 2703
TaqI TCGA 2 cut(s) 747, 843
TasI AATT 3 cut(s) 170, 827, 985
TauI GCSGC 4 cut(s) 577, 1099, 1474, 2458
TseI GCWGC 1 cut(s) 921
TspGWI ACGGA 2 cut(s) 168, 615
XapI RAATTY 1 cut(s) 827
XceI RCATGY 2 cut(s) 774, 1753
ZrmI AGTACT 3 cut(s) 1649, 1784, 1919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.