Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005665.1

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

16473 .. 19099

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005665.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcgctattcattaacgccatcctccgtatcgtggcgttatggcgttatctaatagcgcatcgccccgcattgtggcgctacttgctattcaatagcgcaattgctcctcatcgcggcgttatgacgttattcattggcgttattactccggcgttattcatcatcaccatcactccacattatggcgttatggcattatggcgttatggcgacaaaatcgttgattacccccacaagcaggggtttgtgcttaactggaccacggcgaaggagtgcgcttcgtgtgagagtggtggtggtttgtgtgggtacaactccactaaagctgatgagtttctctgcttccgcaaatatagtgatggcctacgcgtgaagaaagctgctagtattgcaggaactggtatcttagtgtttgttattctcttccgtggtatttcactgattagtgaaaatgacaatgaagatgccgatgccttcattcagaacattggacctctagcagtaaaaagatacaaattttcggatataaggaaaatgaccaactcatttaaagataaactaggtcaaggcggttatggtgatgtgtacgaaggtaagctattgaatggttgtcgtgtggctgtgaaggttcttaaagcatccaaagggaatggagaggacttcgttaatgaggttgcaagcattagtagaacttcccatgttaatgttgtcactcttttggggtattgctttgaaggtaagaaaaaagcgctcatatatgagttcatgcccaatggatcacttgagaagttcatatatagagacagtaatcctttgaaaactactccacacttggaattggaaagactctttcaaatttctatcgggatagctcgagggctggagtacttgcaccgtggggtgcaacacgcgaatcctgcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

309

Amino Acids

34.49

Weight (kDa)

9.38

Isoelectric Point (pI)

18.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccII	CGCG	3 cut(s)	117, 372, 914
AciI	CCGC	4 cut(s)	69, 117, 349, 573
AclWI	GGATC	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	518, 858
AfaI	GTAC	3 cut(s)	314, 590, 890
AfeI	AGCGCT	1 cut(s)	753
AfiI	CCNNNNNNNGG	5 cut(s)	34, 75, 116, 185, 241
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	94, 607, 737, 820, 857
AluBI	AGCT	4 cut(s)	329, 383, 601, 875
AluI	AGCT	4 cut(s)	329, 383, 601, 875
Alw26I	GTCTC	1 cut(s)	798
AlwI	GGATC	1 cut(s)	787
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	876
Aor51HI	AGCGCT	1 cut(s)	753
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	518, 858
AspLEI	GCGC	6 cut(s)	7, 61, 81, 101, 281, 754
AspS9I	GGNCC	2 cut(s)	261, 494
AsuHPI	GGTGA	2 cut(s)	160, 593
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	2 cut(s)	261, 494
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	29, 179, 356
BceAI	ACGGC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	798
BfaI	CTAG	3 cut(s)	387, 500, 563
BfoI	RGCGCY	3 cut(s)	8, 82, 755
BisI	GCNGC	2 cut(s)	118, 384
BlsI	GCNGC	2 cut(s)	119, 385
BmcAI	AGTACT	1 cut(s)	890
Bme18I	GGWCC	2 cut(s)	261, 494
BmeT110I	CYCGRG	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	261, 494
BmsI	GCATC	4 cut(s)	70, 457, 463, 650
BpmI	CTGGAG	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	264, 430, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 75, 116, 185, 241
Bse1I	ACTGG	2 cut(s)	263, 406
BseDI	CCNNGG	3 cut(s)	264, 430, 898
BseGI	GGATG	2 cut(s)	21, 641
BseLI	CCNNNNNNNGG	5 cut(s)	34, 75, 116, 185, 241
BseNI	ACTGG	2 cut(s)	263, 406
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	906
Bsh1236I	CGCG	3 cut(s)	117, 372, 914
BshFI	GGCC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	5 cut(s)	34, 75, 116, 185, 241
BsmAI	GTCTC	1 cut(s)	798
BsnI	GGCC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	876
Bsp143I	GATC	1 cut(s)	779
BspACI	CCGC	4 cut(s)	69, 117, 349, 573
BspANI	GGCC	1 cut(s)	366
BspFNI	CGCG	3 cut(s)	117, 372, 914
BspPI	GGATC	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	263, 406
BssECI	CCNNGG	3 cut(s)	264, 430, 898
BssMI	GATC	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	809, 899
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	3 cut(s)	264, 430, 898
BstF5I	GGATG	2 cut(s)	21, 641
BstFNI	CGCG	3 cut(s)	117, 372, 914
BstH2I	RGCGCY	3 cut(s)	8, 82, 755
BstHHI	GCGC	6 cut(s)	7, 61, 81, 101, 281, 754
BstKTI	GATC	1 cut(s)	782
BstMAI	GTCTC	1 cut(s)	798
BstMBI	GATC	1 cut(s)	779
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 392, 920
BstUI	CGCG	3 cut(s)	117, 372, 914
BstV1I	GCAGC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	264, 430, 898
BtgZI	GCGATG	2 cut(s)	47, 98
BtsCI	GGATG	2 cut(s)	21, 641
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	682
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	6 cut(s)	7, 61, 81, 101, 281, 754
Cfr13I	GGNCC	2 cut(s)	261, 494
Csp6I	GTAC	3 cut(s)	313, 589, 889
CviAII	CATG	2 cut(s)	701, 769
CviJI	RGCY	7 cut(s)	329, 366, 383, 601, 623, 875, 883
CviKI_1	RGCY	7 cut(s)	329, 366, 383, 601, 623, 875, 883
CviQI	GTAC	3 cut(s)	313, 589, 889
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	1 cut(s)	781
DpnII	GATC	1 cut(s)	779
DraI	TTTAAA	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	261, 494
Eco47III	AGCGCT	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	876
FaeI	CATG	2 cut(s)	704, 772
FatI	CATG	2 cut(s)	700, 768
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	118, 384
FokI	GGATG	2 cut(s)	8, 628
Fsp4HI	GCNGC	2 cut(s)	118, 384
FspBI	CTAG	3 cut(s)	387, 500, 563
GlaI	GCGC	6 cut(s)	6, 60, 80, 100, 280, 753
GluI	GCNGC	2 cut(s)	118, 384
GsuI	CTGGAG	1 cut(s)	905
HaeII	RGCGCY	3 cut(s)	8, 82, 755
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	6 cut(s)	7, 61, 81, 101, 281, 754
Hin1II	CATG	2 cut(s)	704, 772
Hin6I	GCGC	6 cut(s)	5, 59, 79, 99, 279, 752
HinP1I	GCGC	6 cut(s)	5, 59, 79, 99, 279, 752
HinfI	GANTC	2 cut(s)	849, 916
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	160, 593
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	486, 526
Hpy188III	TCNNGA	1 cut(s)	868
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	5 cut(s)	265, 487, 587, 622, 731
HpyCH4III	ACNGT	2 cut(s)	809, 899
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	395, 680, 895, 907, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 392, 920
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	704, 772
HspAI	GCGC	6 cut(s)	5, 59, 79, 99, 279, 752
Kzo9I	GATC	1 cut(s)	779
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	165, 227, 244, 381, 387, 869
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	4 cut(s)	70, 457, 463, 650
MaeI	CTAG	3 cut(s)	387, 500, 563
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	1 cut(s)	781
MboI	GATC	1 cut(s)	779
MboII	GAAGA	3 cut(s)	388, 418, 476
MfeI	CAATTG	1 cut(s)	102
MluCI	AATT	4 cut(s)	102, 518, 839, 858
MluI	ACGCGT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	843
MnlI	CCTC	6 cut(s)	35, 120, 507, 652, 667, 872
MseI	TTAA	6 cut(s)	15, 255, 552, 636, 669, 705
MslI	CAYNNNNRTG	1 cut(s)	705
MspI	CCGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	102
MvnI	CGCG	3 cut(s)	117, 372, 914
MwoI	GCNNNNNNNGC	3 cut(s)	85, 392, 920
NdeII	GATC	1 cut(s)	779
NlaIII	CATG	2 cut(s)	704, 772
NmuCI	GTSAC	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	876
PfeI	GAWTC	1 cut(s)	916
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	119, 385
PleI	GAGTC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	843
PspPI	GGNCC	2 cut(s)	261, 494
PspXI	VCTCGAGB	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	314, 590, 890
RsaNI	GTAC	3 cut(s)	313, 589, 889
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	6 cut(s)	15, 255, 552, 636, 669, 705
SatI	GCNGC	2 cut(s)	118, 384
Sau3AI	GATC	1 cut(s)	779
Sau96I	GGNCC	2 cut(s)	261, 494
ScaI	AGTACT	1 cut(s)	890
SchI	GAGTC	1 cut(s)	843
SfaNI	GCATC	4 cut(s)	70, 457, 463, 650
Sfr274I	CTCGAG	1 cut(s)	876
SinI	GGWCC	2 cut(s)	261, 494
SlaI	CTCGAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	2 cut(s)	785, 876
SmoI	CTYRAG	2 cut(s)	785, 876
Sse9I	AATT	4 cut(s)	102, 518, 839, 858
SsiI	CCGC	4 cut(s)	69, 117, 349, 573
SspMI	CTAG	3 cut(s)	387, 500, 563
TaaI	ACNGT	2 cut(s)	809, 899
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	877
TasI	AATT	4 cut(s)	102, 518, 839, 858
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	916
Tru1I	TTAA	6 cut(s)	15, 255, 552, 636, 669, 705
Tru9I	TTAA	6 cut(s)	15, 255, 552, 636, 669, 705
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	6 cut(s)	124, 151, 469, 477, 757, 784
TspGWI	ACGGA	2 cut(s)	17, 419
TspRI	CASTG	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	261, 494
XapI	RAATTY	2 cut(s)	518, 858
XhoI	CTCGAG	1 cut(s)	876
XspI	CTAG	3 cut(s)	387, 500, 563
ZrmI	AGTACT	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.