Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

13680800 .. 13693925

Gene Structure 13126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGTTCATGGCCAAATCTCAGAGTTTCTACGTTGCATGGGTGAAGCAACAAAGAATTACAATCTTAAAGTAGCTGAATTTGACATTGTGACAAAATCAATCTTCAAAGCTGTGGAAACAGGGCATGTTGAGTTTATTACTCAAATATGTAAAGCAAATCCAAAACTTGCTAAAACCTTGGATGAGAAAACTAGATCCATTTACCATTTTGCCATTGAATGTCGCCAAGAAAAAATTTATAGTCTAATATATGGGATTAAAAAGGAAGCCAGGAAAAGAACCGGACGTTCAGTAGACAATTTTAACAACAATATGCTACACGCTGCAGGAATTTTATCGCCACTTTCACAATTTGATCATCTTCAAGGTGCGACTTTGCAAATGCAGAGAGAACTACAATGGTTTAAGGAAGTGGAGAGCATTGTACCTTTCGACAAGTATGAATGTCTAAATCAAACAGATAAATTGACAGCTCGTGAACTATTCACCAAGAATCATAAAAAATTGATGGACGAGGCAGAAATCTCAATAAAACACATGGCAACTTCTTGTACGGTTGTTGGTGCTCTGATTGCTACCATGATGTTTGCTGCAGCATTCACGATTCCTGGTGGGAATAATGGTAATACAGGCATTCCCATGTTCATAGATGAAAGGCTGTTTCTGGCTTTTATAGTTTCAGATGCTTTATCACTCGTTTCTTCCACAACTTCAGTGATTATATTTTTGGGACTTCTCACATCACGTTATGCAGAAGACGACTTTCTCAAGTCCTTACCCAAAAAGATAATGATTGGTCTTTTCACTCTTTTTATCTCTATTGCCACTATGGTGACTGCATTTTCTTCTGCCCTTGTCATCATGTTACACGGAAATTATTCATGGATTGTCATTCCAAGCATTATTCTTGTGAGTGTTCCCATCACCTCATTTGTGTGGGTACAGTTTCCCCTCCTCCTAGGGACTCTGATTTCTACATATGGGCCAGGAATATTTGACAAGGATGTCCAACCTTGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Extensin_2 Pollen_Ole_e_I

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

8.18

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	177 - 287	5.6e-24	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1004
AccI	GTMKAC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	3 cut(s)	77, 234, 330
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	3 cut(s)	426, 553, 942
AgsI	TTSAA	3 cut(s)	106, 218, 365
AjnI	CCWGG	3 cut(s)	269, 607, 985
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	3 cut(s)	74, 110, 473
AluI	AGCT	3 cut(s)	74, 110, 473
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	10, 983
ApeKI	GCWGC	3 cut(s)	323, 590, 593
ApoI	RAATTY	3 cut(s)	77, 234, 330
Asp700I	GAANNNNTTC	1 cut(s)	877
AspA2I	CCTAGG	1 cut(s)	958
AspS9I	GGNCC	1 cut(s)	983
AsuHPI	GGTGA	4 cut(s)	53, 478, 844, 916
AvrII	CCTAGG	1 cut(s)	958
BalI	TGGCCA	1 cut(s)	12
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	310, 577, 605
BccI	CCATC	2 cut(s)	502, 929
BciT130I	CCWGG	3 cut(s)	271, 609, 987
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	2 cut(s)	192, 959
BfmI	CTRYAG	2 cut(s)	324, 591
BisI	GCNGC	3 cut(s)	324, 591, 594
BlnI	CCTAGG	1 cut(s)	958
BlsI	GCNGC	3 cut(s)	325, 592, 595
Bme1390I	CCNGG	3 cut(s)	271, 609, 987
BmgT120I	GGNCC	1 cut(s)	983
BmrFI	CCNGG	3 cut(s)	271, 609, 987
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	177, 958, 1013
BsaWI	WCCGGW	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	271, 609, 987
BseDI	CCNNGG	3 cut(s)	177, 958, 1013
BseGI	GGATG	2 cut(s)	187, 1009
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	3 cut(s)	310, 577, 605
BshFI	GGCC	2 cut(s)	12, 985
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	744, 976
BsmFI	GGGAC	2 cut(s)	744, 976
BsmI	GAATGC	2 cut(s)	596, 633
BsnI	GGCC	2 cut(s)	12, 985
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	194, 355
BspANI	GGCC	2 cut(s)	12, 985
BspCNI	CTCAG	1 cut(s)	32
BspMAI	CTGCAG	2 cut(s)	328, 595
BspPI	GGATC	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	177, 958, 1013
BssMI	GATC	2 cut(s)	194, 355
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	177, 958, 1013
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	271, 609, 987
Bst4CI	ACNGT	2 cut(s)	556, 945
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	187, 1009
BstKTI	GATC	2 cut(s)	197, 358
BstMBI	GATC	2 cut(s)	194, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	3 cut(s)	271, 609, 987
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	269, 607, 985
BstSFI	CTRYAG	2 cut(s)	324, 591
BstV1I	GCAGC	3 cut(s)	310, 577, 605
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	12, 985
BtsCI	GGATG	2 cut(s)	187, 1009
BtsIMutI	CAGTG	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	425, 552, 941
CviAII	CATG	8 cut(s)	8, 37, 125, 538, 580, 640, 862, 882
CviJI	RGCY	8 cut(s)	12, 74, 110, 269, 473, 658, 668, 985
CviKI_1	RGCY	8 cut(s)	12, 74, 110, 269, 473, 658, 668, 985
CviQI	GTAC	3 cut(s)	425, 552, 941
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	2 cut(s)	196, 357
DpnII	GATC	2 cut(s)	194, 355
DrdI	GACNNNNNNGTC	1 cut(s)	1004
DseDI	GACNNNNNNGTC	1 cut(s)	1004
EaeI	YGGCCR	1 cut(s)	10
Eco130I	CCWWGG	3 cut(s)	177, 958, 1013
Eco57I	CTGAAG	1 cut(s)	696
EcoRII	CCWGG	3 cut(s)	269, 607, 985
EcoT14I	CCWWGG	3 cut(s)	177, 958, 1013
ErhI	CCWWGG	3 cut(s)	177, 958, 1013
FaeI	CATG	8 cut(s)	11, 40, 128, 541, 583, 643, 865, 885
FaqI	GGGAC	2 cut(s)	744, 976
FatI	CATG	8 cut(s)	7, 36, 124, 537, 579, 639, 861, 881
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	324, 591, 594
FokI	GGATG	2 cut(s)	194, 1016
Fsp4HI	GCNGC	3 cut(s)	324, 591, 594
FspBI	CTAG	2 cut(s)	192, 959
GluI	GCNGC	3 cut(s)	324, 591, 594
HaeIII	GGCC	2 cut(s)	12, 985
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	8 cut(s)	11, 40, 128, 541, 583, 643, 865, 885
HinfI	GANTC	3 cut(s)	493, 604, 964
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	4 cut(s)	53, 478, 844, 916
Hpy166II	GTNNAC	2 cut(s)	295, 479
Hpy188I	TCNGA	4 cut(s)	22, 570, 682, 969
Hpy188III	TCNNGA	2 cut(s)	476, 601
Hpy8I	GTNNAC	2 cut(s)	295, 479
HpyCH4III	ACNGT	2 cut(s)	556, 945
HpyCH4IV	ACGT	3 cut(s)	31, 286, 745
HpyCH4V	TGCA	7 cut(s)	36, 326, 379, 385, 593, 752, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	3 cut(s)	31, 286, 745
Hsp92II	CATG	8 cut(s)	11, 40, 128, 541, 583, 643, 865, 885
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	194, 355
Lsp1109I	GCAGC	3 cut(s)	310, 577, 605
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	2 cut(s)	192, 959
MaeII	ACGT	3 cut(s)	31, 286, 745
MaeIII	GTNAC	3 cut(s)	88, 832, 864
MalI	GATC	2 cut(s)	196, 357
MboI	GATC	2 cut(s)	194, 355
MboII	GAAGA	5 cut(s)	94, 353, 693, 767, 837
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	9 cut(s)	55, 77, 234, 298, 330, 350, 464, 503, 874
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	958
MnlI	CCTC	4 cut(s)	508, 937, 962, 965
Mox20I	TGGCCA	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	877
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	4 cut(s)	66, 258, 303, 405
MslI	CAYNNNNRTG	3 cut(s)	638, 830, 934
Msp20I	TGGCCA	1 cut(s)	12
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	271, 609, 987
Mva1269I	GAATGC	2 cut(s)	596, 633
MvaI	CCWGG	3 cut(s)	271, 609, 987
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	2 cut(s)	194, 355
NlaIII	CATG	8 cut(s)	11, 40, 128, 541, 583, 643, 865, 885
NmuCI	GTSAC	2 cut(s)	88, 832
NspI	RCATGY	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	830
PctI	GAATGC	2 cut(s)	596, 633
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	2 cut(s)	493, 604
PkrI	GCNGC	3 cut(s)	325, 592, 595
PleI	GAGTC	1 cut(s)	958
PpsI	GAGTC	1 cut(s)	958
Psp6I	CCWGG	3 cut(s)	269, 607, 985
PspGI	CCWGG	3 cut(s)	269, 607, 985
PspPI	GGNCC	1 cut(s)	983
PstI	CTGCAG	2 cut(s)	328, 595
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	3 cut(s)	426, 553, 942
RsaNI	GTAC	3 cut(s)	425, 552, 941
RseI	CAYNNNNRTG	3 cut(s)	638, 830, 934
SaqAI	TTAA	4 cut(s)	66, 258, 303, 405
SatI	GCNGC	3 cut(s)	324, 591, 594
Sau3AI	GATC	2 cut(s)	194, 355
Sau96I	GGNCC	1 cut(s)	983
SchI	GAGTC	1 cut(s)	958
ScrFI	CCNGG	3 cut(s)	271, 609, 987
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	2 cut(s)	324, 591
SmiMI	CAYNNNNRTG	3 cut(s)	638, 830, 934
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	9 cut(s)	55, 77, 234, 298, 330, 350, 464, 503, 874
SspI	AATATT	1 cut(s)	993
SspMI	CTAG	2 cut(s)	192, 959
StyD4I	CCNGG	3 cut(s)	269, 607, 985
StyI	CCWWGG	3 cut(s)	177, 958, 1013
TaaI	ACNGT	2 cut(s)	556, 945
TaiI	ACGT	3 cut(s)	34, 289, 748
TaqI	TCGA	1 cut(s)	432
TasI	AATT	9 cut(s)	55, 77, 234, 298, 330, 350, 464, 503, 874
TfiI	GAWTC	2 cut(s)	493, 604
Tru1I	TTAA	4 cut(s)	66, 258, 303, 405
Tru9I	TTAA	4 cut(s)	66, 258, 303, 405
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	2 cut(s)	88, 832
TseI	GCWGC	3 cut(s)	323, 590, 593
Tsp45I	GTSAC	2 cut(s)	88, 832
TspDTI	ATGAA	4 cut(s)	456, 634, 666, 870
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	1 cut(s)	720
XapI	RAATTY	3 cut(s)	77, 234, 330
XceI	RCATGY	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	877
XspI	CTAG	2 cut(s)	192, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.