Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

78418417 .. 78418977

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG554600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCTCTCCCCCGTGGAGCCCTAGCAGCACCGACTGAAGGCGCAATGCATGAAGACGACTGTCCTTGCTGCCCTCGTACAGCTCGCCAGACTCGCTCCGATCCGATCCTGAGGGAGAAGGATTTTGCTGGTGAGTGCCTAGCCTTTTGGGATGACGATGGTGGGACGGCATATGCTATTTCGGTGTGGCGTCCCCGCGATTTGGCTCAACGGCAGAATGTTGATGTTGGTGGAATCAATATGTCTATACCTAGTTTTGATGCCTCGACTGCCGTACGACTGTCAGGTCGTGGTGGCAATGACGACCTAGATTGGATGGAAACCTGGCTGAGGAAGAAAGCAGTGCAGAAGATCGTTGCAGGAGGAACATGGCTGAGGATAGCGGCTGAGATGAGTGGTGGCGCTAGATTAGGTGCCGCCCTGATTTCGGGTTGTTATAAGGTTGGGAGCCCAGAGCATTGGGCAGCCCAATTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.22

Weight (kDa)

5.67

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AasI	GACNNNNNNGTC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	413
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	196, 383, 417
AclWI	GGATC	2 cut(s)	95, 100
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	2 cut(s)	79, 276
AfiI	CCNNNNNNNGG	4 cut(s)	38, 202, 330, 427
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AlwI	GGATC	2 cut(s)	95, 100
ApeKI	GCWGC	3 cut(s)	26, 69, 464
AspLEI	GCGC	2 cut(s)	44, 404
AsuHPI	GGTGA	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	22, 452
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	2 cut(s)	329, 374
BbvI	GCAGC	3 cut(s)	38, 56, 476
BccI	CCATC	2 cut(s)	152, 310
BceAI	ACGGC	3 cut(s)	183, 227, 257
BciT130I	CCWGG	1 cut(s)	325
BfaI	CTAG	5 cut(s)	23, 140, 252, 308, 405
BfmI	CTRYAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	5 cut(s)	27, 70, 384, 417, 465
BlsI	GCNGC	5 cut(s)	28, 71, 385, 418, 466
Bme1390I	CCNGG	1 cut(s)	325
BmiI	GGNNCC	3 cut(s)	19, 415, 449
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	250
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	2 cut(s)	329, 374
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 202, 330, 427
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	51, 304
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	157, 321
BseLI	CCNNNNNNNGG	4 cut(s)	38, 202, 330, 427
BseMI	GCAATG	2 cut(s)	51, 304
BseMII	CTCAG	4 cut(s)	101, 320, 365, 378
BseXI	GCAGC	3 cut(s)	38, 56, 476
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	413
BsiWI	CGTACG	1 cut(s)	274
BslFI	GGGAC	2 cut(s)	177, 178
BslI	CCNNNNNNNGG	4 cut(s)	38, 202, 330, 427
BsmFI	GGGAC	2 cut(s)	177, 178
Bsp1286I	GDGCHC	2 cut(s)	22, 452
Bsp143I	GATC	3 cut(s)	100, 105, 351
BspACI	CCGC	3 cut(s)	196, 383, 417
BspCNI	CTCAG	4 cut(s)	102, 321, 366, 379
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	19, 415, 449
BspPI	GGATC	2 cut(s)	95, 100
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	51, 304
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	100, 105, 351
BssNI	GRCGYC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	62, 282
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	4 cut(s)	110, 329, 374, 387
BstDSI	CCRYGG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	157, 321
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	44, 404
BstKTI	GATC	3 cut(s)	103, 108, 354
BstMBI	GATC	3 cut(s)	100, 105, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 93, 269
BstNI	CCWGG	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	38, 56, 476
BstV2I	GAAGAC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	157, 321
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	44, 404
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	78, 275
CviAII	CATG	2 cut(s)	50, 369
CviJI	RGCY	9 cut(s)	20, 83, 143, 206, 328, 373, 386, 450, 467
CviKI_1	RGCY	9 cut(s)	20, 83, 143, 206, 328, 373, 386, 450, 467
CviQI	GTAC	2 cut(s)	78, 275
DdeI	CTNAG	4 cut(s)	110, 329, 374, 387
DpnI	GATC	3 cut(s)	102, 107, 353
DpnII	GATC	3 cut(s)	100, 105, 351
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	22, 452
Eco57I	CTGAAG	1 cut(s)	57
Eco81I	CCTNAGG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	22, 452
FaeI	CATG	2 cut(s)	53, 372
FaiI	YATR	8 cut(s)	51, 172, 174, 242, 248, 370, 438, 478
FaqI	GGGAC	2 cut(s)	177, 178
FatI	CATG	2 cut(s)	49, 368
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	5 cut(s)	27, 70, 384, 417, 465
FokI	GGATG	2 cut(s)	164, 328
FriOI	GRGCYC	2 cut(s)	22, 452
Fsp4HI	GCNGC	5 cut(s)	27, 70, 384, 417, 465
FspBI	CTAG	5 cut(s)	23, 140, 252, 308, 405
GlaI	GCGC	2 cut(s)	43, 403
GluI	GCNGC	5 cut(s)	27, 70, 384, 417, 465
HaeII	RGCGCY	1 cut(s)	405
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	2 cut(s)	44, 404
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	53, 372
Hin6I	GCGC	2 cut(s)	42, 402
HinP1I	GCGC	2 cut(s)	42, 402
HinfI	GANTC	2 cut(s)	91, 234
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	100, 105
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	32, 112
HpyCH4III	ACNGT	2 cut(s)	62, 282
HpyCH4V	TGCA	3 cut(s)	49, 346, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 93, 269
HpyF3I	CTNAG	4 cut(s)	110, 329, 374, 387
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	53, 372
HspAI	GCGC	2 cut(s)	42, 402
Kzo9I	GATC	3 cut(s)	100, 105, 351
LmnI	GCTCC	3 cut(s)	17, 101, 447
LpnPI	CCDG	9 cut(s)	101, 114, 122, 270, 310, 337, 345, 434, 465
Lsp1109I	GCAGC	3 cut(s)	38, 56, 476
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	5 cut(s)	23, 140, 252, 308, 405
MalI	GATC	3 cut(s)	102, 107, 353
MboI	GATC	3 cut(s)	100, 105, 351
MboII	GAAGA	3 cut(s)	65, 346, 361
MhlI	GDGCHC	2 cut(s)	22, 452
MluCI	AATT	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	15, 84, 105, 274, 324, 356, 369
Mph1103I	ATGCAT	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	26, 93, 269
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	3 cut(s)	100, 105, 351
NlaIII	CATG	2 cut(s)	53, 372
NlaIV	GGNNCC	3 cut(s)	19, 415, 449
NsiI	ATGCAT	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	28, 71, 385, 418, 466
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspLI	CGTACG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	19, 415, 449
RsaI	GTAC	2 cut(s)	79, 276
RsaNI	GTAC	2 cut(s)	78, 275
SatI	GCNGC	5 cut(s)	27, 70, 384, 417, 465
Sau3AI	GATC	3 cut(s)	100, 105, 351
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	22, 452
SetI	ASST	7 cut(s)	85, 253, 289, 309, 326, 415, 444
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	476
Sse9I	AATT	1 cut(s)	470
SsiI	CCGC	3 cut(s)	196, 383, 417
SspMI	CTAG	5 cut(s)	23, 140, 252, 308, 405
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	62, 282
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	470
TauI	GCSGC	2 cut(s)	386, 419
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	3 cut(s)	26, 69, 464
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	328
XspI	CTAG	5 cut(s)	23, 140, 252, 308, 405
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.