Rh3DG143300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001240
Physical Location & Seq
Forward (+)
12231764 .. 12232204
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG143300.1

Sequence Viewer

Length: 441 bp
ATGATAACTCTCCCTCGTGGAACCCTAGCAGCTTCGATTGGAGGCGCAGAGCATGAAGATGGTGGTCCTTGCCGCCCTCGTATAGCACGCCAGACTCGCTCCGGCGTCAGCTTTCTCCCTACAGTCTTTTTATGGCCGGTCTTGGCTCCAATTCTAATCAAACGTATCCAATTTCTTACTGTAGATCCGATTCTAAGGGAGAAAGATTCAGCTGATGAGTGCCTGACCTTTTGGGATGACGGTGGTGGGACGACATATGCTATTTCAGTGTGGTGTCCCGACAATTTGGCTAGACAGCAGAGTGTTGATGTTGGTGGAATCGATATGTATATACCTGGTTTTGATGCCTCGACTGCCAATCTTGGGTTACTACTGTCGGTCGGGTCGTGGTGTCAAAGACGACCTAGTTTGGATGGAAACCTGGCTGAGGATGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.76

Weight (kDa)

4.7

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 363, 427
AjnI CCWGG 2 cut(s) 334, 420
AluBI AGCT 3 cut(s) 32, 111, 212
AluI AGCT 3 cut(s) 32, 111, 212
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 134, 433
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 65
AvaII GGWCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 53, 407, 425
BciT130I CCWGG 2 cut(s) 336, 422
BciVI GTATCC 1 cut(s) 176
BfaI CTAG 3 cut(s) 26, 291, 405
BfmI CTRYAG 2 cut(s) 120, 180
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 2 cut(s) 30, 73
BlsI GCNGC 2 cut(s) 31, 74
Bme1390I CCNGG 2 cut(s) 336, 422
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 22, 147
BmrFI CCNGG 2 cut(s) 336, 422
BmsI GCATC 1 cut(s) 334
Bpu10I CCTNAGC 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 427
Bse118I RCCGGY 1 cut(s) 136
BseBI CCWGG 2 cut(s) 336, 422
BseCI ATCGAT 1 cut(s) 321
BseGI GGATG 3 cut(s) 241, 418, 436
BseLI CCNNNNNNNGG 2 cut(s) 363, 427
BseMII CTCAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 136, 435
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 102, 137
BslFI GGGAC 2 cut(s) 261, 262
BslI CCNNNNNNNGG 2 cut(s) 363, 427
BsmFI GGGAC 2 cut(s) 261, 262
BsnI GGCC 2 cut(s) 136, 435
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 136, 435
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 22, 147
BspPI GGATC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 336, 422
Bst4CI ACNGT 4 cut(s) 124, 181, 242, 375
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 194, 426
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 3 cut(s) 241, 418, 436
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 2 cut(s) 96, 353
BstNI CCWGG 2 cut(s) 336, 422
BstSCI CCNGG 2 cut(s) 334, 420
BstSFI CTRYAG 2 cut(s) 120, 180
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 321
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 136, 435
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 3 cut(s) 241, 418, 436
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 321
CseI GACGC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 334
CviAII CATG 1 cut(s) 53
CviJI RGCY 8 cut(s) 32, 111, 136, 146, 212, 290, 425, 435
CviKI_1 RGCY 8 cut(s) 32, 111, 136, 146, 212, 290, 425, 435
DdeI CTNAG 2 cut(s) 194, 426
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 334, 420
FaeI CATG 1 cut(s) 56
FaiI YATR 8 cut(s) 54, 83, 133, 256, 258, 326, 330, 332
FaqI GGGAC 2 cut(s) 261, 262
FatI CATG 1 cut(s) 52
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 30, 73
FokI GGATG 2 cut(s) 248, 425
Fsp4HI GCNGC 2 cut(s) 30, 73
FspBI CTAG 3 cut(s) 26, 291, 405
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 30, 73
HaeIII GGCC 2 cut(s) 136, 435
HapII CCGG 2 cut(s) 102, 137
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 4 cut(s) 94, 190, 206, 318
HpaII CCGG 2 cut(s) 102, 137
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 278
HpyCH4III ACNGT 4 cut(s) 124, 181, 242, 375
HpyCH4IV ACGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 353
HpyF3I CTNAG 2 cut(s) 194, 426
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 104, 151
LpnPI CCDG 8 cut(s) 104, 115, 150, 236, 321, 348, 407, 434
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 334
MabI ACCWGGT 1 cut(s) 334
MaeI CTAG 3 cut(s) 26, 291, 405
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 366
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 184
MluCI AATT 3 cut(s) 150, 170, 283
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 5 cut(s) 24, 35, 87, 358, 421
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 102, 137
MspR9I CCNGG 2 cut(s) 336, 422
MvaI CCWGG 2 cut(s) 336, 422
MwoI GCNNNNNNNGC 2 cut(s) 96, 353
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 22, 147
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PfeI GAWTC 3 cut(s) 190, 206, 318
PkrI GCNGC 2 cut(s) 31, 74
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 334, 420
PspGI CCWGG 2 cut(s) 334, 420
PspN4I GGNNCC 2 cut(s) 22, 147
PspPI GGNCC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 2 cut(s) 30, 73
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 336, 422
SetI ASST 8 cut(s) 34, 113, 166, 214, 230, 337, 406, 423
SexAI ACCWGGT 1 cut(s) 334
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 2 cut(s) 120, 180
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 150, 170, 283
SsiI CCGC 1 cut(s) 73
SspMI CTAG 3 cut(s) 26, 291, 405
StyD4I CCNGG 2 cut(s) 334, 420
TaaI ACNGT 4 cut(s) 124, 181, 242, 375
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 35, 321, 350
TaqII GACCGA 1 cut(s) 367
TasI AATT 3 cut(s) 150, 170, 283
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 190, 206, 318
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 425
XspI CTAG 3 cut(s) 26, 291, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.