Rh6CG480100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001240
Physical Location & Seq
Forward (+)
64721532 .. 64723281
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG480100.1

Sequence Viewer

Length: 480 bp
ATGCCTGCGACGCCCGAGTCACCCAAAGCAAACGGAGATCCGGAGATCGCCGCCGCCTTGCTACCGAAGCCTCTAGGGTTTGGTATGCTCAGCTCCGAGATCTCCGGAGCGACTTCTTTGTGCGGAGTTAGTTTTCAAGATGGAGAACCCTGGCTGAGGCTAATGGCTGAGATGGATGACGATGCTGGGCTGGGCATCAACGCTGACTCCAGGTTGAGACGCGATTGGGTGCATAGAGCAATTGGGCAGCCCAATACCTGCAGGAGAATCAAGGGTGCAATTTATGGTAGGGCTATTGTGAGCTCTATCATAAGGAATGTTGCTACAATGAGCCAACCTAGAGGAAGTGATACTGATTCCGACGAGAAGACTACAAACAGGAGCCAAAAGAGCGACCTGATGCCGAGGTTGTTGGCTACTGAAGAGGTTGAGAAGGATGCTGGTTCCAACCCTCCGGGGAAGGAACTAACACTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.05

Weight (kDa)

5.23

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 266
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 2 cut(s) 40, 104
AciI CCGC 3 cut(s) 51, 54, 123
AclWI GGATC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 2 cut(s) 149, 209
AluBI AGCT 2 cut(s) 93, 303
AluI AGCT 2 cut(s) 93, 303
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 14
Aor13HI TCCGGA 2 cut(s) 40, 104
ApeKI GCWGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 12
AvaI CYCGRG 1 cut(s) 14
BanII GRGCYC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 259
BccI CCATC 2 cut(s) 134, 166
BciT130I CCWGG 2 cut(s) 151, 211
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 2 cut(s) 74, 339
BfmI CTRYAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 266
BglII AGATCT 1 cut(s) 99
BisI GCNGC 3 cut(s) 51, 54, 248
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 52, 55, 249
Bme1390I CCNGG 3 cut(s) 151, 211, 456
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 383, 445
BmrFI CCNGG 3 cut(s) 151, 211, 456
BmsI GCATC 4 cut(s) 172, 204, 390, 427
BpiI GAAGAC 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 155
Bpu1102I GCTNAGC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 149, 404, 455
BsaWI WCCGGW 2 cut(s) 40, 104
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 156
BseAI TCCGGA 2 cut(s) 40, 104
BseBI CCWGG 2 cut(s) 151, 211
BseDI CCNNGG 3 cut(s) 149, 404, 455
BseGI GGATG 2 cut(s) 181, 442
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 103, 146, 159
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 2 cut(s) 185, 190
Bsh1236I CGCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 3 cut(s) 41, 105, 455
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 305
Bsp13I TCCGGA 2 cut(s) 40, 104
Bsp143I GATC 3 cut(s) 37, 45, 99
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 3 cut(s) 51, 54, 123
BspCNI CTCAG 3 cut(s) 102, 147, 160
BspEI TCCGGA 2 cut(s) 40, 104
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 383, 445
BspMAI CTGCAG 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 149, 404, 455
BssMI GATC 3 cut(s) 37, 45, 99
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 151, 211
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 89, 155, 168
BstENI CCTNNNNNAGG 1 cut(s) 154
BstF5I GGATG 2 cut(s) 181, 442
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 3 cut(s) 40, 48, 102
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 3 cut(s) 37, 45, 99
BstMWI GCNNNNNNNGC 3 cut(s) 10, 67, 390
BstNI CCWGG 2 cut(s) 151, 211
BstSCI CCNGG 3 cut(s) 149, 209, 454
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 37, 99
BstYI RGATCY 2 cut(s) 37, 99
BtsCI GGATG 2 cut(s) 181, 442
BveI ACCTGC 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 2 cut(s) 19, 228
DdeI CTNAG 3 cut(s) 89, 155, 168
DpnI GATC 3 cut(s) 39, 47, 101
DpnII GATC 3 cut(s) 37, 45, 99
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 149, 209
EcoT38I GRGCYC 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 211
FaiI YATR 4 cut(s) 86, 234, 285, 311
Fnu4HI GCNGC 3 cut(s) 51, 54, 248
FokI GGATG 2 cut(s) 188, 449
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 51, 54, 248
FspBI CTAG 2 cut(s) 74, 339
GluI GCNGC 3 cut(s) 51, 54, 248
GsaI CCCAGC 2 cut(s) 189, 194
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 3 cut(s) 41, 105, 455
HgaI GACGC 2 cut(s) 19, 228
Hin1I GRCGYC 1 cut(s) 11
HinfI GANTC 4 cut(s) 17, 206, 267, 356
HpaII CCGG 3 cut(s) 41, 105, 455
HphI GGTGA 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 97, 361
Hpy188III TCNNGA 3 cut(s) 41, 105, 137
Hpy99I CGWCG 2 cut(s) 13, 365
HpyAV CCTTC 2 cut(s) 427, 454
HpyCH4V TGCA 3 cut(s) 232, 261, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 67, 390
HpyF3I CTNAG 3 cut(s) 89, 155, 168
Hsp92I GRCGYC 1 cut(s) 11
Kpn2I TCCGGA 2 cut(s) 40, 104
Kzo9I GATC 3 cut(s) 37, 45, 99
LmnI GCTCC 3 cut(s) 98, 107, 381
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 4 cut(s) 172, 204, 390, 427
MaeI CTAG 2 cut(s) 74, 339
MaeIII GTNAC 1 cut(s) 18
MalI GATC 3 cut(s) 39, 47, 101
MboI GATC 3 cut(s) 37, 45, 99
MboII GAAGA 2 cut(s) 379, 434
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 2 cut(s) 37, 99
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 2 cut(s) 240, 279
MlyI GAGTC 2 cut(s) 26, 200
MmeI TCCRAC 2 cut(s) 384, 471
MnlI CCTC 6 cut(s) 81, 150, 335, 399, 418, 462
MroI TCCGGA 2 cut(s) 40, 104
MseI TTAA 1 cut(s) 478
MspI CCGG 3 cut(s) 41, 105, 455
MspR9I CCNGG 3 cut(s) 151, 211, 456
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 2 cut(s) 151, 211
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 10, 67, 390
NciI CCSGG 1 cut(s) 456
NdeII GATC 3 cut(s) 37, 45, 99
NlaIV GGNNCC 2 cut(s) 383, 445
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 267, 356
PkrI GCNGC 3 cut(s) 52, 55, 249
PleI GAGTC 2 cut(s) 25, 200
PpsI GAGTC 2 cut(s) 25, 200
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 149, 209
PspFI CCCAGC 2 cut(s) 185, 190
PspGI CCWGG 2 cut(s) 149, 209
PspN4I GGNNCC 2 cut(s) 383, 445
PstI CTGCAG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 37, 99
SacI GAGCTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 3 cut(s) 51, 54, 248
Sau3AI GATC 3 cut(s) 37, 45, 99
SbfI CCTGCAGG 1 cut(s) 263
SchI GAGTC 2 cut(s) 26, 200
ScrFI CCNGG 3 cut(s) 151, 211, 456
SdaI CCTGCAGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 95, 215, 260, 305, 340, 399, 410, 429
SfaNI GCATC 4 cut(s) 172, 204, 390, 427
SfcI CTRYAG 1 cut(s) 259
Sse8387I CCTGCAGG 1 cut(s) 263
Sse9I AATT 2 cut(s) 240, 279
SsiI CCGC 3 cut(s) 51, 54, 123
SspMI CTAG 2 cut(s) 74, 339
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 149, 209, 454
TasI AATT 2 cut(s) 240, 279
TauI GCSGC 2 cut(s) 53, 56
TfiI GAWTC 2 cut(s) 267, 356
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 48
XagI CCTNNNNNAGG 1 cut(s) 154
XspI CTAG 2 cut(s) 74, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.