Rorug04G0062300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
9759010 .. 9759186
177 bp
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UTR
Exon/CDS
Intron
Rorug04G0062300.1

Sequence Viewer

Length: 177 bp
ATGCAATTTCGTAGCACTCATATTTTTAGGGAAGGGAATGCAGCAGCAGATAAGATGGCAAACTTAGGTGTTTCAAAACACTCATTTACTTGGTATCCTAGCCCTCCTGTAGAGCTTCACAGGTACTTGCAGGCTGATTTTTTGGGACTCCCAAATTATCGCTTCACAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.68

Weight (kDa)

9.03

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 75
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 41, 44
BbvI GCAGC 2 cut(s) 53, 56
BccI CCATC 1 cut(s) 49
BciVI GTATCC 1 cut(s) 105
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 108
BfuI GTATCC 1 cut(s) 105
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
BseXI GCAGC 2 cut(s) 53, 56
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 53, 56
BsuI GTATCC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 3 cut(s) 102, 115, 134
CviKI_1 RGCY 3 cut(s) 102, 115, 134
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 64
FaiI YATR 1 cut(s) 21
FaqI GGGAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 42, 45
Fsp4HI GCNGC 2 cut(s) 42, 45
FspBI CTAG 1 cut(s) 99
GluI GCNGC 2 cut(s) 42, 45
HinfI GANTC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 4, 41, 130
HpyF3I CTNAG 1 cut(s) 64
LpnPI CCDG 4 cut(s) 106, 116, 120, 153
Lsp1109I GCAGC 2 cut(s) 53, 56
MaeI CTAG 1 cut(s) 99
MluCI AATT 2 cut(s) 5, 154
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 43
PctI GAATGC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 43, 46
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 2 cut(s) 42, 45
SchI GAGTC 1 cut(s) 141
SetI ASST 4 cut(s) 70, 117, 125, 172
SfcI CTRYAG 1 cut(s) 108
SgeI CNNG 6 cut(s) 102, 111, 119, 133, 139, 143
Sse9I AATT 2 cut(s) 5, 154
SspMI CTAG 1 cut(s) 99
TasI AATT 2 cut(s) 5, 154
TseI GCWGC 2 cut(s) 41, 44
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.