RchiOBHm_Chr7g0190761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001240
Physical Location & Seq
Reverse (-)
9712489 .. 9713182
694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17041

Sequence Viewer

Length: 240 bp
ATGATATCAAAAATATCTACTGTTTGGCTCCAATTTTGTTGCAGCTGGTCAACAGTCTATTTTCTGTGCGGGCGTGCCAGCACCGTTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCTGACTTCTTTCAAGCAATTGTGGACGAGGAGAGCACCAACCTCGTCGTGGGATTCTTTGTGCCTCGTGGCGAGGACTTTTGCTGAGCTTCTTGAAAATCACAATCGATACTCGATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

9.49

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 94
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 130, 212
AluBI AGCT 2 cut(s) 45, 205
AluI AGCT 2 cut(s) 45, 205
Alw21I GWGCWC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BisI GCNGC 1 cut(s) 43
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 69, 94
BspCNI CTCAG 1 cut(s) 193
BspDI ATCGAT 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 29
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 22, 55, 85
BstC8I GCNNGC 3 cut(s) 71, 75, 79
BstDEI CTNAG 1 cut(s) 201
BstMCI CGRYCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 223
BsuTUI ATCGAT 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 71, 75, 79
ClaI ATCGAT 1 cut(s) 223
CviJI RGCY 3 cut(s) 28, 45, 205
CviKI_1 RGCY 3 cut(s) 28, 45, 205
DdeI CTNAG 1 cut(s) 201
Eco32I GATATC 1 cut(s) 6
EcoRV GATATC 1 cut(s) 6
FaqI GGGAC 1 cut(s) 94
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 51, 141
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 51, 141
Hpy99I CGWCG 2 cut(s) 103, 166
HpyCH4III ACNGT 3 cut(s) 22, 55, 85
HpyCH4V TGCA 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 201
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 3 cut(s) 31, 91, 131
Lsp1109I GCAGC 1 cut(s) 54
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 32, 134
MnlI CCTC 4 cut(s) 138, 169, 183, 191
MspA1I CMGCKG 1 cut(s) 45
MunI CAATTG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 45
SatI GCNGC 1 cut(s) 43
SduI GDGCHC 1 cut(s) 154
SetI ASST 4 cut(s) 47, 120, 161, 207
Sse9I AATT 2 cut(s) 32, 134
SsiI CCGC 2 cut(s) 69, 94
TaaI ACNGT 3 cut(s) 22, 55, 85
TaqI TCGA 2 cut(s) 223, 230
TasI AATT 2 cut(s) 32, 134
TfiI GAWTC 1 cut(s) 170
TseI GCWGC 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.