pycom13g03280

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001240
Physical Location & Seq
Forward (+)
2171363 .. 2174968
3606 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03280.3

Sequence Viewer

Length: 495 bp
ATGCATTTCAAGCTCTTGTTGTCAAGACCTGGAGCTGGAAACTTAGTCGCTAAAATCTCAATAGGTGCAGTTGCGGGTCTCATATTTCTAATCGTTATCGTTTGCTGCTTAAGGAGAAAGTTGTCATCATATAGATTTCTTTTCTTTTGGAAGAAGCAAAACCAAAATCGTCAAATTGTAGAGACCTTTCTAAGGAGCTACGAGCCGCTTCAAGTACGAAGGTATAGCTATTCGGAGGTCAAGAAAATGACCAACTCCTTCAAAGAAAAATTAGGACAAGGAGGCTATGGTGCTGTTTACAAAGGAAAGTTAAAGGACGGCTGTCTTGTAGCAGTGAAGGTCTTGACAAAACTAACAGGAGATGGAGAAGAATTTATGAATGAAGTGGCAGCCATTAGTAGAACTTCGCATGTCAACGTCGTCACCTTGTTAGGCTTTTGTTTGAGGGTTCCAGAAGAGCTCTCATCTATGAATTCATGCCTAATGGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

9.71

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 74, 206
AcsI RAATTY 2 cut(s) 371, 472
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 35, 192
AflII CTTAAG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 10, 212, 262
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 5 cut(s) 13, 35, 198, 228, 460
AluI AGCT 5 cut(s) 13, 35, 198, 228, 460
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 83, 176
ApeKI GCWGC 2 cut(s) 105, 389
ApoI RAATTY 2 cut(s) 371, 472
AsuHPI GGTGA 1 cut(s) 415
BanII GRGCYC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 92, 401
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 83, 176
BfrI CTTAAG 1 cut(s) 109
BisI GCNGC 3 cut(s) 106, 206, 390
BlsI GCNGC 3 cut(s) 107, 207, 391
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 30
BoxI GACNNNNGTC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 83, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 192
BseBI CCWGG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 35, 192
BseXI GCAGC 2 cut(s) 92, 401
BsgI GTGCAG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 35, 192
BsmAI GTCTC 2 cut(s) 83, 176
Bso31I GGTCTC 2 cut(s) 83, 176
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 2 cut(s) 74, 206
BspLI GGNNCC 1 cut(s) 450
BspQI GCTCTTC 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 83, 176
BssMI GATC 1 cut(s) 487
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 43, 191
BstENI CCTNNNNNAGG 1 cut(s) 190
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 2 cut(s) 83, 176
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 413
BstPAI GACNNNNGTC 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 92, 401
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
Csp6I GTAC 1 cut(s) 215
CviAII CATG 2 cut(s) 410, 477
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 2 cut(s) 43, 191
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 462
Eco31I GGTCTC 2 cut(s) 83, 176
Eco53kI GAGCTC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 462
FaeI CATG 2 cut(s) 413, 480
FaiI YATR 9 cut(s) 83, 130, 132, 225, 288, 377, 411, 470, 478
FatI CATG 2 cut(s) 409, 476
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 106, 206, 390
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 3 cut(s) 106, 206, 390
GluI GCNGC 3 cut(s) 106, 206, 390
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 2 cut(s) 413, 480
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 298, 415
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 4 cut(s) 24, 241, 343, 452
Hpy8I GTNNAC 2 cut(s) 298, 415
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 213, 268, 331
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 4, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 43, 191
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 413, 480
Kzo9I GATC 1 cut(s) 487
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 32, 195
LpnPI CCDG 5 cut(s) 15, 21, 42, 342, 465
Lsp1109I GCAGC 2 cut(s) 92, 401
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 3 cut(s) 163, 380, 467
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 4 cut(s) 174, 269, 371, 472
MnlI CCTC 3 cut(s) 229, 275, 438
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 110, 311
MspCI CTTAAG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 487
NlaIII CATG 2 cut(s) 413, 480
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 450
PkrI GCNGC 3 cut(s) 107, 207, 391
PshAI GACNNNNGTC 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SacI GAGCTC 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 2 cut(s) 110, 311
SatI GCNGC 3 cut(s) 106, 206, 390
Sau3AI GATC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 4 cut(s) 174, 269, 371, 472
SsiI CCGC 2 cut(s) 74, 206
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 420
TasI AATT 4 cut(s) 174, 269, 371, 472
TauI GCSGC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 110, 311
Tru9I TTAA 2 cut(s) 110, 311
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 105, 389
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 4 cut(s) 392, 396, 465, 485
TspRI CASTG 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 2 cut(s) 371, 472
XceI RCATGY 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.