Rorug03G0344200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001240
Physical Location & Seq
Reverse (-)
41500496 .. 41501280
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0344200.1

Sequence Viewer

Length: 585 bp
ATGGCACAACATCTCATGATGGGGATGGAAGCTTCCGAAATCCAGTTGTGGAGACTCATAAAAGAAGCTCGACAAGAAGCTGAAGCCAATGCAATAAAATTGGAGGAAACACGTGCAGCCTTTGAGGAAAAATGCCAGGTGGTCGATGCCAATGAGAGAGACGTCAGCGAGCTGAGGACCAAGCTGGGAAATGAGATTGTCAATAGAGTAAGGGAATTCGAGCTGAACCAGAATGAGATTAACAAGAGCTCCTGCAAGTACTACCGCATGGGATGGGTTCAGGGCCAGCAGACCGAGAAGGATAGTTTTTTGATGAACCAGACGCATTTGACTTGGGGATGGGAGTGCATTCGTCAGAGTATGACTGGATCCCAGGAATGGACTCGGCAGACAAGCCTGCTGAAGATGACGCCGACGAGGACATTGCCTGATTTCTCGTCTAGCATAATTATCTTAGTAATATTTAGCACTATCTTTTCCTTTTTTTTTTCCTATTTTGTAATCACGGAGAAACTTGTTTGCTCTTGTACCTCACTTTCTTGCTATGATGGTCTGGGCCTCTTTCATTTCGTGGTCAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.59

Weight (kDa)

5.49

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 363, 376
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 102, 422
AcvI CACGTG 1 cut(s) 113
AcyI GRCGYC 2 cut(s) 162, 410
AfaI GTAC 2 cut(s) 260, 529
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 110
AjnI CCWGG 2 cut(s) 135, 372
AluBI AGCT 7 cut(s) 32, 68, 80, 172, 184, 223, 249
AluI AGCT 7 cut(s) 32, 68, 80, 172, 184, 223, 249
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 46, 153
AlwI GGATC 2 cut(s) 363, 376
AoxI GGCC 2 cut(s) 283, 556
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 177, 283, 556
AvaII GGWCC 1 cut(s) 177
BamHI GGATCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 128
BccI CCATC 5 cut(s) 13, 19, 267, 333, 542
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 2 cut(s) 137, 374
BcoDI GTCTC 2 cut(s) 46, 153
BfaI CTAG 2 cut(s) 441, 583
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 137, 374
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 177, 283, 556
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 2 cut(s) 137, 374
BmsI GCATC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 162, 410
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 43, 370
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 137, 374
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 3 cut(s) 30, 278, 344
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 43, 370
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 2 cut(s) 285, 558
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 46, 153
BsmBI CGTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 2 cut(s) 285, 558
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 368
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 285, 558
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 2 cut(s) 363, 376
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 2 cut(s) 43, 370
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 1 cut(s) 368
BssNI GRCGYC 2 cut(s) 162, 410
Bst2UI CCWGG 2 cut(s) 137, 374
BstACI GRCGYC 2 cut(s) 162, 410
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 170, 287, 398
BstDEI CTNAG 2 cut(s) 173, 454
BstF5I GGATG 3 cut(s) 30, 278, 344
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 2 cut(s) 46, 153
BstMBI GATC 1 cut(s) 368
BstNI CCWGG 2 cut(s) 137, 374
BstSCI CCNGG 2 cut(s) 135, 372
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 2 cut(s) 285, 558
BtsCI GGATG 3 cut(s) 30, 278, 344
Cac8I GCNNGC 3 cut(s) 170, 287, 398
CciI TCATGA 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 177, 283, 556
CseI GACGC 2 cut(s) 331, 418
Csp6I GTAC 2 cut(s) 259, 528
CviAII CATG 2 cut(s) 16, 268
CviQI GTAC 2 cut(s) 259, 528
DdeI CTNAG 2 cut(s) 173, 454
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 102, 422
Eco72I CACGTG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 135, 372
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 2 cut(s) 19, 271
FaiI YATR 6 cut(s) 17, 59, 269, 362, 446, 546
FatI CATG 2 cut(s) 15, 267
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 3 cut(s) 37, 285, 351
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 441, 583
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 2 cut(s) 285, 558
HgaI GACGC 2 cut(s) 331, 418
Hin1I GRCGYC 2 cut(s) 162, 410
Hin1II CATG 2 cut(s) 19, 271
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 2 cut(s) 54, 382
Hpy188I TCNGA 2 cut(s) 37, 357
Hpy188III TCNNGA 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 112, 162
HpyCH4V TGCA 4 cut(s) 92, 116, 255, 348
HpyF3I CTNAG 2 cut(s) 173, 454
HpySE526I ACGT 2 cut(s) 112, 162
Hsp92I GRCGYC 2 cut(s) 162, 410
Hsp92II CATG 2 cut(s) 19, 271
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 441, 583
MaeII ACGT 2 cut(s) 112, 162
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 1 cut(s) 415
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 3 cut(s) 98, 215, 447
MlyI GAGTC 2 cut(s) 48, 376
MnlI CCTC 6 cut(s) 97, 118, 168, 411, 541, 569
MseI TTAA 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 137, 374
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 2 cut(s) 137, 374
NdeII GATC 1 cut(s) 368
NlaIII CATG 2 cut(s) 19, 271
NlaIV GGNNCC 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 364
PagI TCATGA 1 cut(s) 15
PctI GAATGC 1 cut(s) 348
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 48, 376
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
PpsI GAGTC 2 cut(s) 48, 376
Ppu21I YACGTR 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 135, 372
PspCI CACGTG 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 135, 372
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 3 cut(s) 177, 283, 556
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 260, 529
RsaNI GTAC 2 cut(s) 259, 528
SacI GAGCTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 368
Sau96I GGNCC 3 cut(s) 177, 283, 556
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 2 cut(s) 48, 376
ScrFI CCNGG 2 cut(s) 137, 374
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 177
Sse9I AATT 3 cut(s) 98, 215, 447
SsiI CCGC 1 cut(s) 265
SspI AATATT 1 cut(s) 462
SspMI CTAG 2 cut(s) 441, 583
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 135, 372
TaiI ACGT 2 cut(s) 115, 165
TaqI TCGA 3 cut(s) 70, 144, 219
TaqII GACCGA 1 cut(s) 308
TasI AATT 3 cut(s) 98, 215, 447
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 329, 554
TspGWI ACGGA 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 215
XspI CTAG 2 cut(s) 441, 583
ZraI GACGTC 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.