Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

5705087 .. 5711884

Gene Structure 6798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGCGAATTTTGCGAAGCCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCGTAAGGGTAGATTTGCCAAGGATGGTCTGATTCAGTACCGCATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGCTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGAAGTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAGTGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCGATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCATTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCCAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTGAGCCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCAGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCGGAACTGGTCTCCAAAGGTGTCTTGAGCTGTGCAACCCAGGAAGTAAAGGATCTTTTCCATCTCCTGGAGCATGAATTTCTACCTCTCGACCTTGCTGTAAAGATACAACCACTGTTGACTAAAATCTCAAAATTTGGGGGTAAGCTGGCTTCAGCTTCTTCTGTTCCTGAAGTGCAACTGTCTCAATATGTTCCTGCCCTTGAAAAGCTTGGTACTTTGAGGTTGCTCCAGCAGGTGTCTCGGGTGTATCAGTCGATGAAGATTGAACATCTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGCTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGGGTGTGGAGTCAGATGGATTTCGTGATCACTTGACTAAATTTGCTGAGTCTTTGAACAAGACCAGGGCTATGGTCTACCCTCCTCCAAAGAAAGCATCTAGACTAGGTGAAATTCTTCCTTCTTTGGCAGAGACTGTAGATAAGGAACATAAAAGGCTTCTTGCTAGGAAATCAATCATTGAGAAAAGGAAGGAAGAACAGGAACGTCAACTTCTGGAAATGGAACGTGAGGAAGAGTCAAGGAGGCTCAAGCAACAGAAAATAACTGAAGAGGCAGAGGCGAAAAGGCTTGCCACCGAGTCTGAAATAAGGAAGAAACAAAGGCTCCTGAAGGAAATAGAGGAAAAAGAACTTGAAGAAGCACAGCAACTCCTTCAAGATGTAAGCAAAAAGAAGAAGGGAAAGAAGACACTTTTGGATGGGGAAAAGGTGACCAAGCAAACTTTATTGGACATGGCCGTGCATGAACAGATCAAGGAGAGAGAAGAAAGGGAGAAGAAATTAACAAAACTTTCCAAAACAATGGATCACTTGGAAAGAGCTAAAAGGGAAGAGTCTGCTCCTCTGATTGAAGCTGCATATCAACAACGTTTAGTGGAAGAAAGGGTGCTTCATGAACGTGAGCAACAGCTGGAAATTGAGCTGAGCCAACAGCGTCATGAAGGAGATGTCAAGGAGAAGAATAGGCTAGTGCGGATGTTGAACAATAAGACTATCTTCCAGGAAAGGGTTGTGCATCGAAGGCAGGCAGAGTTTGAAAGGCGGAGGGCAGATAGAGAAGAACAAATCAGTCGAATGATTCAGGCCAGGAAACTGGAGAGGGAGGCAATGAGGAAGAAGATATTCTATGTGAGATCTGAAGAGGAAAGGCTAAAGAAGCTGCATGAAGAAGAGGAAGCCCGCAAGCGTGAAGAAGCCGAGCGAAGGAGGAGAGAAGAAGCTGAACGCAAAGCAAAATTGGATGAGATTGCTGAAAAGCAGAGGCTAAGGGAGAGGGAATTGGAGGAAAAAGCCGAAAGGCAGAAGAGAGAAATGCTTGCTAGGCCGGCCATTGAGCCTCGTCCAGTTGAGCCTGTAGTTCCTGCTCCTGCTGCTCCTATTGCTGTCACTGCTGCTGCACCCAACGCTCCTGGAAGGTATGTTCCTAGGCATCGGCGACAAGAAGCTGCAGAACCTGATCGTAGGGGAATCAGGCCTGATGAGCGCCCAGCCCTGTCAAATGATAGGTGGCGTAGTGATCGCAGTGAGGAGCAAAGACCACCAGCCTTTGGTGCGGGTTCAAAATCGACTTGGTCCTCATCCAGACCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

948

Amino Acids

111.1

Weight (kDa)

9.32

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	8 - 407	1.5e-137	eIF3a, PCI domain, TPR-like region
PCI	PF01399	438 - 508	3.6e-06	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1360
Acc16I	TGCGCA	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	1360
AccB7I	CCANNNNNTGG	2 cut(s)	1201, 2801
AccBSI	CCGCTC	1 cut(s)	756
AccI	GTMKAC	2 cut(s)	1497, 1608
AccII	CGCG	1 cut(s)	2842
AciI	CCGC	7 cut(s)	220, 754, 2227, 2296, 2434, 2807, 2840
AclI	AACGTT	1 cut(s)	2122
AclWI	GGATC	3 cut(s)	1194, 1414, 2067
AcoI	YGGCCR	2 cut(s)	1989, 2580
AcsI	RAATTY	6 cut(s)	7, 846, 1211, 1268, 1571, 1644
AcuI	CTGAAG	9 cut(s)	63, 396, 734, 893, 1272, 1326, 1821, 1883, 2412
AcvI	CACGTG	1 cut(s)	1010
AfaI	GTAC	3 cut(s)	218, 313, 1351
AfiI	CCNNNNNNNGG	5 cut(s)	1201, 1507, 2260, 2457, 2801
AflIII	ACRYGT	1 cut(s)	1007
AjnI	CCWGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
AjuI	GAANNNNNNNTTGG	2 cut(s)	1931, 1963
AloI	GAACNNNNNNTCC	2 cut(s)	2658, 2690
Alw26I	GTCTC	5 cut(s)	642, 1150, 1323, 1380, 1658
AlwI	GGATC	3 cut(s)	1194, 1414, 2067
AlwNI	CAGNNNCTG	2 cut(s)	1667, 2708
Ama87I	CYCGRG	1 cut(s)	1377
AoxI	GGCC	7 cut(s)	371, 516, 1989, 2337, 2576, 2580, 2726
ApeKI	GCWGC	9 cut(s)	709, 977, 1013, 2108, 2413, 2624, 2645, 2648, 2699
ApoI	RAATTY	6 cut(s)	7, 846, 1211, 1268, 1571, 1644
Asp700I	GAANNNNTTC	3 cut(s)	768, 1647, 2375
AspA2I	CCTAGG	1 cut(s)	2678
AspLEI	GCGC	3 cut(s)	498, 1050, 2739
AspS9I	GGNCC	2 cut(s)	517, 2826
AsuHPI	GGTGA	3 cut(s)	274, 1652, 1975
AsuII	TTCGAA	1 cut(s)	586
AsuNHI	GCTAGC	1 cut(s)	863
AvaI	CYCGRG	1 cut(s)	1377
AvaII	GGWCC	1 cut(s)	2826
AvrII	CCTAGG	1 cut(s)	2678
BarI	GAAGNNNNNNTAC	2 cut(s)	1270, 1302
BbrPI	CACGTG	1 cut(s)	1010
BbsI	GAAGAC	1 cut(s)	1946
BbvI	GCAGC	9 cut(s)	721, 964, 1025, 2095, 2400, 2611, 2632, 2635, 2686
BccI	CCATC	7 cut(s)	197, 811, 817, 1054, 1203, 1541, 1946
BceAI	ACGGC	2 cut(s)	549, 1976
BcgI	CGANNNNNNTGC	4 cut(s)	66, 100, 1358, 1392
BciT130I	CCWGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
BclI	TGATCA	4 cut(s)	51, 264, 1000, 1558
BcoDI	GTCTC	5 cut(s)	642, 1150, 1323, 1380, 1658
BfaI	CTAG	8 cut(s)	699, 864, 1632, 1637, 1698, 2222, 2574, 2679
BfmI	CTRYAG	4 cut(s)	472, 1668, 2607, 2700
BfoI	RGCGCY	1 cut(s)	2740
BfuAI	ACCTGC	1 cut(s)	1360
BglII	AGATCT	4 cut(s)	379, 489, 1121, 2387
BisI	GCNGC	9 cut(s)	710, 978, 1014, 2109, 2414, 2625, 2646, 2649, 2700
BlnI	CCTAGG	1 cut(s)	2678
BlpI	GCTNAGC	3 cut(s)	300, 389, 2177
BlsI	GCNGC	9 cut(s)	711, 979, 1015, 2110, 2415, 2626, 2647, 2650, 2701
Bme1390I	CCNGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
Bme18I	GGWCC	1 cut(s)	2826
BmeT110I	CYCGRG	1 cut(s)	1377
BmgT120I	GGNCC	2 cut(s)	517, 2826
BmiI	GGNNCC	1 cut(s)	1859
BmrFI	CCNGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
BmsI	GCATC	7 cut(s)	64, 289, 968, 1453, 1637, 2278, 2692
BmtI	GCTAGC	1 cut(s)	867
BpiI	GAAGAC	1 cut(s)	1946
BpmI	CTGGAG	3 cut(s)	1223, 1349, 2369
Bpu10I	CCTNAGC	1 cut(s)	2519
Bpu1102I	GCTNAGC	3 cut(s)	300, 389, 2177
Bpu14I	TTCGAA	1 cut(s)	586
BpuEI	CTTGAG	5 cut(s)	306, 506, 952, 1180, 1766
BsaAI	YACGTR	2 cut(s)	311, 1010
BsaI	GGTCTC	2 cut(s)	642, 1150
BsaJI	CCNNGG	7 cut(s)	198, 252, 315, 446, 1173, 1596, 2678
BsaXI	ACNNNNNCTCC	4 cut(s)	1842, 1872, 1887, 1917
Bsc4I	CCNNNNNNNGG	5 cut(s)	1201, 1507, 2260, 2457, 2801
Bse118I	RCCGGY	1 cut(s)	2578
Bse1I	ACTGG	3 cut(s)	1146, 2352, 2597
Bse3DI	GCAATG	2 cut(s)	77, 2367
BseBI	CCWGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
BseDI	CCNNGG	7 cut(s)	198, 252, 315, 446, 1173, 1596, 2678
BseGI	GGATG	8 cut(s)	208, 1065, 1422, 1468, 1957, 2235, 2500, 2831
BseLI	CCNNNNNNNGG	5 cut(s)	1201, 1507, 2260, 2457, 2801
BseMI	GCAATG	2 cut(s)	77, 2367
BseMII	CTCAG	6 cut(s)	282, 291, 380, 663, 1569, 2168
BseNI	ACTGG	3 cut(s)	1146, 2352, 2597
BseRI	GAGGAG	5 cut(s)	1119, 1605, 2085, 2476, 2795
BseXI	GCAGC	9 cut(s)	721, 964, 1025, 2095, 2400, 2611, 2632, 2635, 2686
BseYI	CCCAGC	1 cut(s)	2740
BsgI	GTGCAG	4 cut(s)	651, 963, 1032, 2634
Bsh1236I	CGCG	1 cut(s)	2842
BshFI	GGCC	7 cut(s)	373, 518, 1991, 2339, 2578, 2582, 2728
BsiHKCI	CYCGRG	1 cut(s)	1377
BsiSI	CCGG	2 cut(s)	20, 2579
BslI	CCNNNNNNNGG	5 cut(s)	1201, 1507, 2260, 2457, 2801
BsmAI	GTCTC	5 cut(s)	642, 1150, 1323, 1380, 1658
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	7 cut(s)	373, 518, 1991, 2339, 2578, 2582, 2728
Bso31I	GGTCTC	2 cut(s)	642, 1150
BsoBI	CYCGRG	1 cut(s)	1377
Bsp119I	TTCGAA	1 cut(s)	586
Bsp1720I	GCTNAGC	3 cut(s)	300, 389, 2177
BspACI	CCGC	7 cut(s)	220, 754, 2227, 2296, 2434, 2807, 2840
BspANI	GGCC	7 cut(s)	373, 518, 1991, 2339, 2578, 2582, 2728
BspCNI	CTCAG	6 cut(s)	283, 292, 381, 664, 1570, 2169
BspFNI	CGCG	1 cut(s)	2842
BspHI	TCATGA	3 cut(s)	91, 2146, 2191
BspLI	GGNNCC	1 cut(s)	1859
BspMAI	CTGCAG	1 cut(s)	2704
BspMI	ACCTGC	1 cut(s)	1360
BspOI	GCTAGC	1 cut(s)	867
BspPI	GGATC	3 cut(s)	1194, 1414, 2067
BspQI	GCTCTTC	1 cut(s)	1134
BspT104I	TTCGAA	1 cut(s)	586
BspTNI	GGTCTC	2 cut(s)	642, 1150
BsrBI	CCGCTC	1 cut(s)	756
BsrDI	GCAATG	2 cut(s)	77, 2367
BsrFI	RCCGGY	1 cut(s)	2578
BsrI	ACTGG	3 cut(s)	1146, 2352, 2597
BssAI	RCCGGY	1 cut(s)	2578
BssECI	CCNNGG	7 cut(s)	198, 252, 315, 446, 1173, 1596, 2678
BssT1I	CCWWGG	4 cut(s)	198, 252, 446, 2678
Bst2UI	CCWGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
Bst4CI	ACNGT	6 cut(s)	481, 687, 738, 1251, 1317, 1669
Bst6I	CTCTTC	9 cut(s)	39, 252, 1134, 1761, 1797, 2079, 2388, 2418, 2552
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstBAI	YACGTR	2 cut(s)	311, 1010
BstBI	TTCGAA	1 cut(s)	586
BstDEI	CTNAG	7 cut(s)	291, 300, 389, 672, 1578, 2177, 2519
BstEII	GGTNACC	1 cut(s)	1963
BstF5I	GGATG	8 cut(s)	208, 1065, 1422, 1468, 1957, 2235, 2500, 2831
BstFNI	CGCG	1 cut(s)	2842
BstH2I	RGCGCY	1 cut(s)	2740
BstHHI	GCGC	3 cut(s)	498, 1050, 2739
BstMAI	GTCTC	5 cut(s)	642, 1150, 1323, 1380, 1658
BstNI	CCWGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
BstPI	GGTNACC	1 cut(s)	1963
BstSCI	CCNGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
BstSFI	CTRYAG	4 cut(s)	472, 1668, 2607, 2700
BstUI	CGCG	1 cut(s)	2842
BstV1I	GCAGC	9 cut(s)	721, 964, 1025, 2095, 2400, 2611, 2632, 2635, 2686
BstV2I	GAAGAC	1 cut(s)	1946
BstX2I	RGATCY	5 cut(s)	379, 489, 1121, 1186, 2387
BstXI	CCANNNNNNTGG	3 cut(s)	1603, 2056, 2347
BstYI	RGATCY	5 cut(s)	379, 489, 1121, 1186, 2387
BsuRI	GGCC	7 cut(s)	373, 518, 1991, 2339, 2578, 2582, 2728
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	8 cut(s)	208, 1065, 1422, 1468, 1957, 2235, 2500, 2831
BtsI	GCAGTG	2 cut(s)	2640, 2782
BtsIMutI	CAGTG	5 cut(s)	406, 486, 1247, 2640, 2782
BveI	ACCTGC	1 cut(s)	1360
CaiI	CAGNNNCTG	2 cut(s)	1667, 2708
CciI	TCATGA	3 cut(s)	91, 2146, 2191
CfoI	GCGC	3 cut(s)	498, 1050, 2739
Cfr10I	RCCGGY	1 cut(s)	2578
Cfr13I	GGNCC	2 cut(s)	517, 2826
CseI	GACGC	1 cut(s)	2177
Csp6I	GTAC	3 cut(s)	217, 312, 1350
CviQI	GTAC	3 cut(s)	217, 312, 1350
DdeI	CTNAG	7 cut(s)	291, 300, 389, 672, 1578, 2177, 2519
DraI	TTTAAA	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	1989, 2580
Eam1104I	CTCTTC	9 cut(s)	39, 252, 1134, 1761, 1797, 2079, 2388, 2418, 2552
EarI	CTCTTC	9 cut(s)	39, 252, 1134, 1761, 1797, 2079, 2388, 2418, 2552
EciI	GGCGGA	1 cut(s)	2311
Eco130I	CCWWGG	4 cut(s)	198, 252, 446, 2678
Eco147I	AGGCCT	2 cut(s)	373, 2728
Eco31I	GGTCTC	2 cut(s)	642, 1150
Eco47I	GGWCC	1 cut(s)	2826
Eco57I	CTGAAG	9 cut(s)	63, 396, 734, 893, 1272, 1326, 1821, 1883, 2412
Eco72I	CACGTG	1 cut(s)	1010
Eco88I	CYCGRG	1 cut(s)	1377
Eco91I	GGTNACC	1 cut(s)	1963
EcoO109I	RGGNCCY	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	1963
EcoRII	CCWGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
EcoT14I	CCWWGG	4 cut(s)	198, 252, 446, 2678
EcoT22I	ATGCAT	3 cut(s)	79, 282, 889
ErhI	CCWWGG	4 cut(s)	198, 252, 446, 2678
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 2234, 2266
FauI	CCCGC	2 cut(s)	2441, 2800
FauNDI	CATATG	1 cut(s)	1503
FbaI	TGATCA	4 cut(s)	51, 264, 1000, 1558
FblI	GTMKAC	2 cut(s)	1497, 1608
Fnu4HI	GCNGC	9 cut(s)	710, 978, 1014, 2109, 2414, 2625, 2646, 2649, 2700
FokI	GGATG	8 cut(s)	215, 1072, 1429, 1475, 1964, 2242, 2507, 2818
FseI	GGCCGGCC	1 cut(s)	2582
Fsp4HI	GCNGC	9 cut(s)	710, 978, 1014, 2109, 2414, 2625, 2646, 2649, 2700
FspBI	CTAG	8 cut(s)	699, 864, 1632, 1637, 1698, 2222, 2574, 2679
FspI	TGCGCA	1 cut(s)	497
GlaI	GCGC	3 cut(s)	497, 1049, 2738
GluI	GCNGC	9 cut(s)	710, 978, 1014, 2109, 2414, 2625, 2646, 2649, 2700
GsaI	CCCAGC	1 cut(s)	2744
GsuI	CTGGAG	3 cut(s)	1223, 1349, 2369
HaeII	RGCGCY	1 cut(s)	2740
HaeIII	GGCC	7 cut(s)	373, 518, 1991, 2339, 2578, 2582, 2728
HapII	CCGG	2 cut(s)	20, 2579
HgaI	GACGC	1 cut(s)	2177
HhaI	GCGC	3 cut(s)	498, 1050, 2739
Hin6I	GCGC	3 cut(s)	496, 1048, 2737
HinP1I	GCGC	3 cut(s)	496, 1048, 2737
HincII	GTYRAC	6 cut(s)	175, 233, 288, 1254, 1498, 1742
HindII	GTYRAC	6 cut(s)	175, 233, 288, 1254, 1498, 1742
HindIII	AAGCTT	2 cut(s)	916, 1343
HinfI	GANTC	9 cut(s)	211, 610, 1541, 1580, 1769, 1832, 2087, 2332, 2721
HpaII	CCGG	2 cut(s)	20, 2579
HphI	GGTGA	3 cut(s)	274, 1652, 1975
Hpy166II	GTNNAC	8 cut(s)	175, 233, 288, 826, 1254, 1498, 1609, 1742
Hpy8I	GTNNAC	8 cut(s)	175, 233, 288, 826, 1254, 1498, 1609, 1742
HpyCH4III	ACNGT	6 cut(s)	481, 687, 738, 1251, 1317, 1669
HpyCH4IV	ACGT	6 cut(s)	310, 1009, 1738, 1759, 2122, 2152
HpyF3I	CTNAG	7 cut(s)	291, 300, 389, 672, 1578, 2177, 2519
HpySE526I	ACGT	6 cut(s)	310, 1009, 1738, 1759, 2122, 2152
HspAI	GCGC	3 cut(s)	496, 1048, 2737
KroI	GCCGGC	1 cut(s)	2578
KroNI	GCCGGC	1 cut(s)	2580
Ksp22I	TGATCA	4 cut(s)	51, 264, 1000, 1558
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	9 cut(s)	163, 1204, 1368, 1863, 2098, 2623, 2632, 2665, 2782
Lsp1109I	GCAGC	9 cut(s)	721, 964, 1025, 2095, 2400, 2611, 2632, 2635, 2686
LweI	GCATC	7 cut(s)	64, 289, 968, 1453, 1637, 2278, 2692
MaeI	CTAG	8 cut(s)	699, 864, 1632, 1637, 1698, 2222, 2574, 2679
MaeII	ACGT	6 cut(s)	310, 1009, 1738, 1759, 2122, 2152
MaeIII	GTNAC	4 cut(s)	439, 1526, 1963, 2638
MbiI	CCGCTC	1 cut(s)	756
MflI	RGATCY	5 cut(s)	379, 489, 1121, 1186, 2387
MlyI	GAGTC	5 cut(s)	1550, 1589, 1778, 1841, 2096
MmeI	TCCRAC	1 cut(s)	492
Mph1103I	ATGCAT	3 cut(s)	79, 282, 889
MroNI	GCCGGC	1 cut(s)	2578
MroXI	GAANNNNTTC	3 cut(s)	768, 1647, 2375
MseI	TTAA	8 cut(s)	153, 792, 873, 921, 953, 1080, 1470, 2036
MslI	CAYNNNNRTG	4 cut(s)	882, 1487, 1991, 2151
MspA1I	CMGCKG	2 cut(s)	712, 2164
MspI	CCGG	2 cut(s)	20, 2579
MspR9I	CCNGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
MvnI	CGCG	1 cut(s)	2842
NaeI	GCCGGC	1 cut(s)	2580
NdeI	CATATG	1 cut(s)	1503
NgoMIV	GCCGGC	1 cut(s)	2578
NheI	GCTAGC	1 cut(s)	863
NlaIV	GGNNCC	1 cut(s)	1859
NmeAIII	GCCGAG	1 cut(s)	2476
NmuCI	GTSAC	2 cut(s)	1963, 2638
NsbI	TGCGCA	1 cut(s)	497
NsiI	ATGCAT	3 cut(s)	79, 282, 889
NspV	TTCGAA	1 cut(s)	586
PagI	TCATGA	3 cut(s)	91, 2146, 2191
PaqCI	CACCTGC	1 cut(s)	1360
PceI	AGGCCT	2 cut(s)	373, 2728
PciSI	GCTCTTC	1 cut(s)	1134
PctI	GAATGC	1 cut(s)	749
PdiI	GCCGGC	1 cut(s)	2580
PdmI	GAANNNNTTC	3 cut(s)	768, 1647, 2375
PfeI	GAWTC	4 cut(s)	211, 610, 2332, 2721
PflFI	GACNNNGTC	1 cut(s)	2824
PflMI	CCANNNNNTGG	2 cut(s)	1201, 2801
PfoI	TCCNGGA	3 cut(s)	1200, 2253, 2662
PkrI	GCNGC	9 cut(s)	711, 979, 1015, 2110, 2415, 2626, 2647, 2650, 2701
PleI	GAGTC	5 cut(s)	1549, 1588, 1777, 1840, 2095
PmaCI	CACGTG	1 cut(s)	1010
PmlI	CACGTG	1 cut(s)	1010
PpsI	GAGTC	5 cut(s)	1549, 1588, 1777, 1840, 2095
Ppu21I	YACGTR	2 cut(s)	311, 1010
Psp1406I	AACGTT	1 cut(s)	2122
Psp6I	CCWGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
PspCI	CACGTG	1 cut(s)	1010
PspEI	GGTNACC	1 cut(s)	1963
PspFI	CCCAGC	1 cut(s)	2740
PspGI	CCWGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
PspN4I	GGNNCC	1 cut(s)	1859
PspPI	GGNCC	2 cut(s)	517, 2826
PstI	CTGCAG	1 cut(s)	2704
PstNI	CAGNNNCTG	2 cut(s)	1667, 2708
PsuI	RGATCY	5 cut(s)	379, 489, 1121, 1186, 2387
PsyI	GACNNNGTC	1 cut(s)	2824
PvuII	CAGCTG	2 cut(s)	712, 2164
RigI	GGCCGGCC	1 cut(s)	2582
RsaI	GTAC	3 cut(s)	218, 313, 1351
RsaNI	GTAC	3 cut(s)	217, 312, 1350
RseI	CAYNNNNRTG	4 cut(s)	882, 1487, 1991, 2151
SalI	GTCGAC	1 cut(s)	1496
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	8 cut(s)	153, 792, 873, 921, 953, 1080, 1470, 2036
SatI	GCNGC	9 cut(s)	710, 978, 1014, 2109, 2414, 2625, 2646, 2649, 2700
Sau96I	GGNCC	2 cut(s)	517, 2826
SchI	GAGTC	5 cut(s)	1550, 1589, 1778, 1841, 2096
ScrFI	CCNGG	7 cut(s)	317, 1175, 1202, 1597, 2255, 2341, 2664
SfaNI	GCATC	7 cut(s)	64, 289, 968, 1453, 1637, 2278, 2692
SfcI	CTRYAG	4 cut(s)	472, 1668, 2607, 2700
SfuI	TTCGAA	1 cut(s)	586
SinI	GGWCC	1 cut(s)	2826
SmiMI	CAYNNNNRTG	4 cut(s)	882, 1487, 1991, 2151
SmlI	CTYRAG	5 cut(s)	321, 485, 931, 1159, 1781
SmoI	CTYRAG	5 cut(s)	321, 485, 931, 1159, 1781
SseBI	AGGCCT	2 cut(s)	373, 2728
SsiI	CCGC	7 cut(s)	220, 754, 2227, 2296, 2434, 2807, 2840
SspMI	CTAG	8 cut(s)	699, 864, 1632, 1637, 1698, 2222, 2574, 2679
StuI	AGGCCT	2 cut(s)	373, 2728
StyD4I	CCNGG	7 cut(s)	315, 1173, 1200, 1595, 2253, 2339, 2662
StyI	CCWWGG	4 cut(s)	198, 252, 446, 2678
TaaI	ACNGT	6 cut(s)	481, 687, 738, 1251, 1317, 1669
TaiI	ACGT	6 cut(s)	313, 1012, 1741, 1762, 2125, 2155
TaqII	GACCGA	1 cut(s)	666
TfiI	GAWTC	4 cut(s)	211, 610, 2332, 2721
Tru1I	TTAA	8 cut(s)	153, 792, 873, 921, 953, 1080, 1470, 2036
Tru9I	TTAA	8 cut(s)	153, 792, 873, 921, 953, 1080, 1470, 2036
TscAI	CASTG	5 cut(s)	406, 486, 1254, 2647, 2782
TseFI	GTSAC	2 cut(s)	1963, 2638
TseI	GCWGC	9 cut(s)	709, 977, 1013, 2108, 2413, 2624, 2645, 2648, 2699
Tsp45I	GTSAC	2 cut(s)	1963, 2638
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	5 cut(s)	406, 486, 1254, 2647, 2782
Tth111I	GACNNNGTC	1 cut(s)	2824
Van91I	CCANNNNNTGG	2 cut(s)	1201, 2801
VpaK11BI	GGWCC	1 cut(s)	2826
XapI	RAATTY	6 cut(s)	7, 846, 1211, 1268, 1571, 1644
XbaI	TCTAGA	1 cut(s)	1631
XmaJI	CCTAGG	1 cut(s)	2678
XmiI	GTMKAC	2 cut(s)	1497, 1608
XmnI	GAANNNNTTC	3 cut(s)	768, 1647, 2375
XspI	CTAG	8 cut(s)	699, 864, 1632, 1637, 1698, 2222, 2574, 2679
Zsp2I	ATGCAT	3 cut(s)	79, 282, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.