Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

35676066 .. 35676686

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCTCTCCCCCACAGAACCCTAGCAGCGCTGACTGGAGGCACAAAGCATGAAGATGGCGGTTCTTGCCGCCCTCGTACAGCGCCCCAGACTCGCTCCAGTGTCAGCTTTCTCCCTAGGGTCTTTTTATGGCAGCGTCCAGGCGATTTGGCTCGACAGCGGAGTGTTGATGTTGGTGGAATCGATATGTATATCCCTGGTTTTGATGCCTCGACTGCCGTGCAATTGTTGGGTCATGGTGATGACCTCATTTGGATGGAAACCTGGCTGAGGAAGAAAGCAATGTGGAAGATCGTCGACGTTGCAAGAGGAACCTGGCTGAGGATGGCGGCTGAGATGAGTGGCGGCGCTAGACTAGGTGCCAACGCTGATTTCGAGTTGTTAAAAGGTTGGGTGCCCAGAGCATTTGGGCAGCCCAATTTCTATAGGAGGCAAAGGGTGTATTTTATGCCTAGGATATATTATCATATTTGGGCTCTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.33

Weight (kDa)

10.31

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	359, 394
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	5 cut(s)	60, 70, 160, 329, 345
AfaI	GTAC	1 cut(s)	79
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	270, 321
AjnI	CCWGG	4 cut(s)	139, 196, 263, 314
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Aor51HI	AGCGCT	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	26, 133, 412
AspA2I	CCTAGG	2 cut(s)	116, 452
AspLEI	GCGC	3 cut(s)	31, 85, 350
AsuHPI	GGTGA	1 cut(s)	251
AvrII	CCTAGG	2 cut(s)	116, 452
BaeGI	GKGCMC	1 cut(s)	399
BanI	GGYRCC	2 cut(s)	359, 394
BanII	GRGCYC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	269, 320
BbvI	GCAGC	3 cut(s)	38, 145, 424
BccI	CCATC	3 cut(s)	50, 250, 319
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	4 cut(s)	141, 198, 265, 316
BfaI	CTAG	5 cut(s)	23, 117, 351, 356, 453
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	3 cut(s)	32, 86, 351
BisI	GCNGC	6 cut(s)	27, 70, 134, 330, 346, 413
BlnI	CCTAGG	2 cut(s)	116, 452
BlsI	GCNGC	6 cut(s)	28, 71, 135, 331, 347, 414
Bme1390I	CCNGG	4 cut(s)	141, 198, 265, 316
BmiI	GGNNCC	3 cut(s)	313, 361, 396
BmrFI	CCNGG	4 cut(s)	141, 198, 265, 316
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	57, 82
Bpu10I	CCTNAGC	2 cut(s)	269, 320
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	116, 196, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 321
Bse1I	ACTGG	2 cut(s)	40, 99
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	4 cut(s)	141, 198, 265, 316
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	116, 196, 452
BseGI	GGATG	2 cut(s)	261, 330
BseLI	CCNNNNNNNGG	2 cut(s)	270, 321
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	260, 311, 324
BseNI	ACTGG	2 cut(s)	40, 99
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	38, 145, 424
BshNI	GGYRCC	2 cut(s)	359, 394
BshVI	ATCGAT	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	270, 321
Bsp1286I	GDGCHC	2 cut(s)	399, 478
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	5 cut(s)	60, 70, 160, 329, 345
BspCNI	CTCAG	3 cut(s)	261, 312, 325
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	313, 361, 396
BspT107I	GGYRCC	2 cut(s)	359, 394
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	40, 99
BssECI	CCNNGG	3 cut(s)	116, 196, 452
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	116, 452
Bst2UI	CCWGG	4 cut(s)	141, 198, 265, 316
BstDEI	CTNAG	3 cut(s)	269, 320, 333
BstENI	CCTNNNNNAGG	2 cut(s)	268, 319
BstF5I	GGATG	2 cut(s)	261, 330
BstH2I	RGCGCY	3 cut(s)	32, 86, 351
BstHHI	GCGC	3 cut(s)	31, 85, 350
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 215
BstNI	CCWGG	4 cut(s)	141, 198, 265, 316
BstSCI	CCNGG	4 cut(s)	139, 196, 263, 314
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	38, 145, 424
Bsu15I	ATCGAT	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	261, 330
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	3 cut(s)	31, 85, 350
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	50, 236
CviJI	RGCY	7 cut(s)	108, 152, 268, 319, 332, 415, 476
CviKI_1	RGCY	7 cut(s)	108, 152, 268, 319, 332, 415, 476
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	269, 320, 333
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	116, 452
Eco24I	GRGCYC	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	30
EcoNI	CCTNNNNNAGG	2 cut(s)	268, 319
EcoRII	CCWGG	4 cut(s)	139, 196, 263, 314
EcoT14I	CCWWGG	2 cut(s)	116, 452
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	116, 452
FaeI	CATG	2 cut(s)	53, 239
FaiI	YATR	9 cut(s)	51, 130, 188, 192, 237, 426, 449, 460, 468
FatI	CATG	2 cut(s)	49, 235
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	6 cut(s)	27, 70, 134, 330, 346, 413
FokI	GGATG	2 cut(s)	268, 337
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	6 cut(s)	27, 70, 134, 330, 346, 413
FspBI	CTAG	5 cut(s)	23, 117, 351, 356, 453
GlaI	GCGC	3 cut(s)	30, 84, 349
GluI	GCNGC	6 cut(s)	27, 70, 134, 330, 346, 413
GsuI	CTGGAG	2 cut(s)	57, 82
HaeII	RGCGCY	3 cut(s)	32, 86, 351
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	3 cut(s)	31, 85, 350
Hin1II	CATG	2 cut(s)	53, 239
Hin6I	GCGC	3 cut(s)	29, 83, 348
HinP1I	GCGC	3 cut(s)	29, 83, 348
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	91, 180
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	2 cut(s)	299, 302
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	223, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 215
HpyF3I	CTNAG	3 cut(s)	269, 320, 333
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	53, 239
HspAI	GCGC	3 cut(s)	29, 83, 348
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	3 cut(s)	38, 145, 424
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	5 cut(s)	23, 117, 351, 356, 453
MaeII	ACGT	1 cut(s)	300
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	65, 286, 301
MfeI	CAATTG	1 cut(s)	224
MhlI	GDGCHC	2 cut(s)	399, 478
MluCI	AATT	2 cut(s)	224, 418
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	9 cut(s)	15, 32, 84, 220, 257, 264, 302, 315, 423
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	3 cut(s)	54, 240, 254
MspA1I	CMGCKG	1 cut(s)	160
MspR9I	CCNGG	4 cut(s)	141, 198, 265, 316
MunI	CAATTG	1 cut(s)	224
MvaI	CCWGG	4 cut(s)	141, 198, 265, 316
MwoI	GCNNNNNNNGC	2 cut(s)	66, 215
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	53, 239
NlaIV	GGNNCC	3 cut(s)	313, 361, 396
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	28, 71, 135, 331, 347, 414
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	4 cut(s)	139, 196, 263, 314
PspGI	CCWGG	4 cut(s)	139, 196, 263, 314
PspN4I	GGNNCC	3 cut(s)	313, 361, 396
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	3 cut(s)	54, 240, 254
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	6 cut(s)	27, 70, 134, 330, 346, 413
Sau3AI	GATC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	4 cut(s)	141, 198, 265, 316
SduI	GDGCHC	2 cut(s)	399, 478
SetI	ASST	7 cut(s)	110, 249, 266, 303, 317, 361, 391
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	424
SgrDI	CGTCGACG	1 cut(s)	296
SmiMI	CAYNNNNRTG	3 cut(s)	54, 240, 254
Sse9I	AATT	2 cut(s)	224, 418
SsiI	CCGC	5 cut(s)	60, 70, 160, 329, 345
SspMI	CTAG	5 cut(s)	23, 117, 351, 356, 453
StyD4I	CCNGG	4 cut(s)	139, 196, 263, 314
StyI	CCWWGG	2 cut(s)	116, 452
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	154, 183, 212, 297, 375
TasI	AATT	2 cut(s)	224, 418
TauI	GCSGC	3 cut(s)	72, 332, 348
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	3 cut(s)	26, 133, 412
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	106
XagI	CCTNNNNNAGG	2 cut(s)	268, 319
XmaJI	CCTAGG	2 cut(s)	116, 452
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	5 cut(s)	23, 117, 351, 356, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.