Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007477.1

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

25764 .. 26504

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007477.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgaaggcctttctgtcgaactatgggccacttcaagttaaaagatacagctatttggatgttaagaagatgaccaattctttcgaagaaaaattaggacaaggggactacggtggtgtatacaaaggaaaactaaacgatggctgtcttgttgcagtgaagatcttgaacagatcaaaaggtaatggagaggattttatgaatgaagttgcagccattagtagaacttcccatgtcaacattgtcagcttgttgggcttttgtcttgagggttcaaaaagagctctggtctatgaattaatgcctaatggatccctcgagaagttcatatttgatgcaaataacccccgaaaagagcattacttgggatgggaagcactggaacaaattgtttggctccaattttgttgtagctggtcaacagtctcttttctgcgcgggcgtgccagcaccgttcgggtgcgatcgtcgggggtgtcccttgacctgacttctttcgagcgattgtggacgaggagagcaccaacctcgtcgtgggattctttgtgcctcgtggtgaggacttttgctgagcttcttcaaaaatcacaatcgatactcgatgttgtagatcgagcagagcgagaaccactaggaagtgaggagaacttgctaaagcgtgactttagcttggttgggttgctagggcgttacccttgcttggctggtttgggtttggtggcactgaaagtcggcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

246

Amino Acids

27.58

Weight (kDa)

8.99

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	438
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	2 cut(s)	306, 319
AfiI	CCNNNNNNNGG	2 cut(s)	534, 700
AgsI	TTSAA	4 cut(s)	35, 169, 276, 581
AluBI	AGCT	6 cut(s)	51, 249, 284, 414, 574, 669
AluI	AGCT	6 cut(s)	51, 249, 284, 414, 574, 669
Alw21I	GWGCWC	2 cut(s)	286, 523
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	306, 319
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	6, 26
ApeKI	GCWGC	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	568
AsuII	TTCGAA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	551
Bbv12I	GWGCWC	2 cut(s)	286, 523
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	134, 363
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	2 cut(s)	632, 683
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	313, 398
BmsI	GCATC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 700
Bse1I	ACTGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	593
BseGI	GGATG	2 cut(s)	64, 374
BseLI	CCNNNNNNNGG	2 cut(s)	534, 700
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	529, 656
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	8, 28
BshVI	ATCGAT	1 cut(s)	593
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	2 cut(s)	286, 523
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	119, 463
BslI	CCNNNNNNNGG	2 cut(s)	534, 700
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	119, 463
BsnI	GGCC	2 cut(s)	8, 28
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	286, 523
Bsp143I	GATC	5 cut(s)	162, 173, 311, 464, 610
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	2 cut(s)	8, 28
BspCNI	CTCAG	1 cut(s)	562
BspDI	ATCGAT	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	313, 398
BspPI	GGATC	2 cut(s)	306, 319
BspT104I	TTCGAA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	5 cut(s)	162, 173, 311, 464, 610
BssNAI	GTATAC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	551
Bst1107I	GTATAC	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	113, 424, 454
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	440, 444, 448
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	64, 374
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	165, 176, 314, 467, 613
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	5 cut(s)	162, 173, 311, 464, 610
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	162, 311
BstYI	RGATCY	2 cut(s)	162, 311
BstZ17I	GTATAC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	8, 28
BsuTUI	ATCGAT	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	64, 374
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 377, 722
Cac8I	GCNNGC	3 cut(s)	440, 444, 448
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	593
CviAII	CATG	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	5 cut(s)	164, 175, 313, 466, 612
DpnII	GATC	5 cut(s)	162, 173, 311, 464, 610
Ecl136II	GAGCTC	1 cut(s)	284
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	1 cut(s)	236
FaiI	YATR	6 cut(s)	24, 121, 200, 234, 294, 329
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	2 cut(s)	119, 463
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	71, 381
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	632, 683
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	8, 28
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	2 cut(s)	238, 420
HindII	GTYRAC	2 cut(s)	238, 420
HinfI	GANTC	1 cut(s)	539
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	4 cut(s)	121, 238, 420, 510
Hpy188I	TCNGA	1 cut(s)	740
Hpy188III	TCNNGA	3 cut(s)	166, 266, 319
Hpy8I	GTNNAC	4 cut(s)	121, 238, 420, 510
Hpy99I	CGWCG	2 cut(s)	472, 535
HpyCH4III	ACNGT	3 cut(s)	113, 424, 454
HpyCH4V	TGCA	3 cut(s)	155, 212, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	162, 173, 311, 464, 610
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	6 cut(s)	272, 365, 400, 460, 500, 690
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	632, 683
MaeIII	GTNAC	2 cut(s)	659, 689
MalI	GATC	5 cut(s)	164, 175, 313, 466, 612
MboI	GATC	5 cut(s)	162, 173, 311, 464, 610
MboII	GAAGA	4 cut(s)	79, 98, 172, 569
MflI	RGATCY	2 cut(s)	162, 311
MhlI	GDGCHC	2 cut(s)	286, 523
MluCI	AATT	5 cut(s)	76, 92, 296, 387, 401
MnlI	CCTC	8 cut(s)	184, 262, 326, 507, 538, 552, 560, 634
MseI	TTAA	3 cut(s)	39, 63, 299
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	5 cut(s)	162, 173, 311, 464, 610
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	313, 398
NmuCI	GTSAC	1 cut(s)	659
NspV	TTCGAA	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	313, 398
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	162, 311
PvuI	CGATCG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	39, 63, 299
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	162, 173, 311, 464, 610
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	286, 523
SetI	ASST	9 cut(s)	53, 184, 251, 286, 416, 489, 530, 576, 671
SfaNI	GCATC	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	266, 317
SmoI	CTYRAG	2 cut(s)	266, 317
Sse9I	AATT	5 cut(s)	76, 92, 296, 387, 401
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	2 cut(s)	632, 683
SstI	GAGCTC	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	8
TaaI	ACNGT	3 cut(s)	113, 424, 454
TaqI	TCGA	7 cut(s)	17, 84, 318, 498, 593, 600, 613
TasI	AATT	5 cut(s)	76, 92, 296, 387, 401
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	39, 63, 299
Tru9I	TTAA	3 cut(s)	39, 63, 299
TscAI	CASTG	3 cut(s)	162, 384, 729
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	5 cut(s)	17, 215, 219, 309, 316
TspRI	CASTG	3 cut(s)	162, 384, 729
VspI	ATTAAT	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	632, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.