Rmu_sc0005107.1_g000004

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005107.1
Physical Location & Seq
Forward (+)
37683 .. 47483
9801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005107.1_g000004.1.cds

Sequence Viewer

Length: 2418 bp
atgaggagttcgagtggagaccccccctctcggggtcgtctttggccgcaaatggccgtggcttttgcagccatagttgtcgtcctttcgagcaatgtgggttcagttcaagctgatcatccttacctttactcttcacccccaccgccttatgtctacagctcgccaccaccccccgttcactctcctccaccaccgtacttgtacaagtcaccgcctccaccatcgccttcaccacctcctccttatgtctacaagtcacctcccccaccatcgccttcaccacatcctccttatgtctacaagtcgcctcccccaccatcgccttcaccaccacctccttacgtctacaagtcaccccctccaccatcgccttctccaccaccaccgtatgtgtacaagtctcctccacctccctcacctaaattgcctccgtacgagtacaagtcaccaccacctccatcaccttctcccccaccaccatacgtctacaagtctccaccgcctccttccccatctccaccaccaccttactactacaaatctcctccacctccagcacattctccaccaccaccttactattacaaatctcctccacctccagcacattctccaccaccaccttactactataagtctcctcctccaccttctccctcaccgccgccaccatactactacaagtcccccccacctccttctccctcacctcctccaccatacatctacaaatcccctccaccaccttccccatctcctcctccaccatactactacacgtctcctccaccaccatcaccaaagccgtacgtgtacaagtctccgccaccaccatcgccgaagccttactactaccaatctcctccaccaccggctccgtactatccacacccacacccccaccaccagccattgatcgtcaaggtcgtcggaaaggtctactgctacagatgctacgactggggatatccaatcaagtctcacgacaagaaacatctcgaaggcgctgttgttgagatcacatgctgggcaggcaaaaaggcgatcatggcttacggtaaaaccaagaacaacggtaaattcagcgtcgcagtcgaagattttgactacggtaaatatggtgccgaggcttgtaccgcgaagctccacatggcacccaagggttcactatgcagcattccaactcctctcaactggggcgacaagggagccaagctgaaggtcaagtccaagaacaattgggaggttgtgctcaaggccaagccctttgctttcgctccaaagaccccttacaaggagtgtgctaagcccgctccacaccatccttctccttacgtctacaagtcgccgcctccaccaaccccgacttacgtctacaaatctcctcctccaccgtcgccaaagtacatttacaagtcgccgccaccaccggcttactactacaagtcgccaccaccaccatcaccaaagccgtatgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccgtacgtgtacaagtctccaccaccaccatctcccaagccatactcctaccatgattttgtggacattccttctgttgcagcgagggagaagtcatcctccaccttgccggactccggtgaccagtggcaggcagccgactccggtgatcggaatccggcgaccggtgaatggaatccggttaccggtaatgggaatccggcaaccgatgaccaaaatctggctattattgccctccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

805

Amino Acids

88.28

Weight (kDa)

9.69

Isoelectric Point (pI)

107.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1124, 1156
AccB7I CCANNNNNTGG 1 cut(s) 2395
AccBSI CCGCTC 1 cut(s) 1316
AccI GTMKAC 8 cut(s) 156, 252, 300, 348, 489, 942, 1341, 1377
AccII CGCG 1 cut(s) 1142
AcoI YGGCCR 2 cut(s) 44, 54
AcsI RAATTY 1 cut(s) 1082
AcuI CTGAAG 1 cut(s) 1241
AgeI ACCGGT 2 cut(s) 2339, 2360
AgsI TTSAA 1 cut(s) 110
AjiI CACGTC 1 cut(s) 783
AluBI AGCT 4 cut(s) 113, 162, 1147, 1219
AluI AGCT 4 cut(s) 113, 162, 1147, 1219
Alw21I GWGCWC 1 cut(s) 1257
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 3 cut(s) 44, 54, 1260
ApeKI GCWGC 4 cut(s) 68, 1176, 2255, 2309
ApoI RAATTY 1 cut(s) 1082
AsiGI ACCGGT 2 cut(s) 2339, 2360
AspLEI GCGC 1 cut(s) 1010
AvaI CYCGRG 1 cut(s) 30
BanI GGYRCC 2 cut(s) 1124, 1156
BarI GAAGNNNNNNTAC 2 cut(s) 836, 868
Bbv12I GWGCWC 1 cut(s) 1257
BbvI GCAGC 4 cut(s) 80, 1188, 2267, 2321
BclI TGATCA 1 cut(s) 115
BfmI CTRYAG 2 cut(s) 157, 949
BfoI RGCGCY 1 cut(s) 1011
BisI GCNGC 8 cut(s) 47, 69, 668, 1177, 1352, 1424, 2256, 2310
BlpI GCTNAGC 1 cut(s) 1308
BlsI GCNGC 8 cut(s) 48, 70, 669, 1178, 1353, 1425, 2257, 2311
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 783
BmiI GGNNCC 4 cut(s) 879, 1126, 1158, 1213
BmrI ACTGGG 2 cut(s) 973, 1207
BmsI GCATC 1 cut(s) 944
BmuI ACTGGG 2 cut(s) 973, 1207
BoxI GACNNNNGTC 1 cut(s) 1373
BpmI CTGGAG 3 cut(s) 540, 588, 2396
Bpu1102I GCTNAGC 1 cut(s) 1308
BpuEI CTTGAG 1 cut(s) 1241
BsaBI GATNNNNATC 1 cut(s) 2328
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 3 cut(s) 57, 1128, 1161
BsaWI WCCGGW 5 cut(s) 2291, 2318, 2339, 2353, 2360
BsaXI ACNNNNNCTCC 3 cut(s) 28, 772, 802
Bse118I RCCGGY 4 cut(s) 874, 1432, 2339, 2360
Bse1I ACTGG 4 cut(s) 968, 1202, 2299, 2413
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 2328
BseDI CCNNGG 3 cut(s) 57, 1128, 1161
BseGI GGATG 4 cut(s) 118, 286, 1324, 2270
BseJI GATNNNNATC 1 cut(s) 2328
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 4 cut(s) 968, 1202, 2299, 2413
BseXI GCAGC 4 cut(s) 80, 1188, 2267, 2321
BseYI CCCAGC 1 cut(s) 1029
Bsh1236I CGCG 1 cut(s) 1142
Bsh1285I CGRYCG 1 cut(s) 2340
BshFI GGCC 3 cut(s) 46, 56, 1262
BshNI GGYRCC 2 cut(s) 1124, 1156
BshTI ACCGGT 2 cut(s) 2339, 2360
BsiEI CGRYCG 1 cut(s) 2340
BsiHKAI GWGCWC 1 cut(s) 1257
BsiHKCI CYCGRG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 673
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 1179
BsnI GGCC 3 cut(s) 46, 56, 1262
Bso31I GGTCTC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 1257
Bsp143I GATC 5 cut(s) 115, 918, 1020, 1047, 2323
Bsp1720I GCTNAGC 1 cut(s) 1308
BspANI GGCC 3 cut(s) 46, 56, 1262
BspFNI CGCG 1 cut(s) 1142
BspLI GGNNCC 4 cut(s) 879, 1126, 1158, 1213
BspT107I GGYRCC 2 cut(s) 1124, 1156
BspTNI GGTCTC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 1316
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 4 cut(s) 874, 1432, 2339, 2360
BsrI ACTGG 4 cut(s) 968, 1202, 2299, 2413
BssAI RCCGGY 4 cut(s) 874, 1432, 2339, 2360
BssECI CCNNGG 3 cut(s) 57, 1128, 1161
BssMI GATC 5 cut(s) 115, 918, 1020, 1047, 2323
BssT1I CCWWGG 1 cut(s) 1161
Bst4CI ACNGT 6 cut(s) 198, 390, 1061, 1079, 1115, 1398
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 164, 1036, 1314, 2307
BstDEI CTNAG 1 cut(s) 1308
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 2 cut(s) 2294, 2356
BstF5I GGATG 4 cut(s) 118, 286, 1324, 2270
BstFNI CGCG 1 cut(s) 1142
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 5 cut(s) 118, 921, 1023, 1050, 2326
BstMBI GATC 5 cut(s) 115, 918, 1020, 1047, 2323
BstMCI CGRYCG 1 cut(s) 2340
BstMWI GCNNNNNNNGC 7 cut(s) 68, 954, 1035, 1052, 1139, 1313, 2405
BstNSI RCATGY 1 cut(s) 1029
BstPAI GACNNNNGTC 1 cut(s) 1373
BstPI GGTNACC 2 cut(s) 2294, 2356
BstSFI CTRYAG 2 cut(s) 157, 949
BstUI CGCG 1 cut(s) 1142
BstV1I GCAGC 4 cut(s) 80, 1188, 2267, 2321
BsuRI GGCC 3 cut(s) 46, 56, 1262
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 5 cut(s) 210, 258, 306, 354, 822
BtrI CACGTC 1 cut(s) 783
BtsCI GGATG 4 cut(s) 118, 286, 1324, 2270
BtsIMutI CAGTG 1 cut(s) 2306
Cac8I GCNNGC 4 cut(s) 164, 1036, 1314, 2307
CfoI GCGC 1 cut(s) 1010
Cfr10I RCCGGY 4 cut(s) 874, 1432, 2339, 2360
CseI GACGC 1 cut(s) 1078
CspAI ACCGGT 2 cut(s) 2339, 2360
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 4 cut(s) 1026, 1051, 1153, 2228
DdeI CTNAG 1 cut(s) 1308
DpnI GATC 5 cut(s) 117, 920, 1022, 1049, 2325
DpnII GATC 5 cut(s) 115, 918, 1020, 1047, 2323
EaeI YGGCCR 2 cut(s) 44, 54
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 816
Eco130I CCWWGG 1 cut(s) 1161
Eco31I GGTCTC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 971
Eco57I CTGAAG 1 cut(s) 1241
Eco88I CYCGRG 1 cut(s) 30
Eco91I GGTNACC 2 cut(s) 2294, 2356
EcoO65I GGTNACC 2 cut(s) 2294, 2356
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 1 cut(s) 1161
ErhI CCWWGG 1 cut(s) 1161
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 4 cut(s) 1029, 1054, 1156, 2231
FaqI GGGAC 1 cut(s) 673
FatI CATG 4 cut(s) 1025, 1050, 1152, 2227
FauI CCCGC 1 cut(s) 1321
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 8 cut(s) 156, 252, 300, 348, 489, 942, 1341, 1377
Fnu4HI GCNGC 8 cut(s) 47, 69, 668, 1177, 1352, 1424, 2256, 2310
FokI GGATG 4 cut(s) 105, 273, 1311, 2257
Fsp4HI GCNGC 8 cut(s) 47, 69, 668, 1177, 1352, 1424, 2256, 2310
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 8 cut(s) 47, 69, 668, 1177, 1352, 1424, 2256, 2310
GsaI CCCAGC 1 cut(s) 1033
GsuI CTGGAG 3 cut(s) 540, 588, 2396
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 3 cut(s) 46, 56, 1262
HgaI GACGC 1 cut(s) 1078
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 4 cut(s) 1029, 1054, 1156, 2231
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HinfI GANTC 5 cut(s) 2288, 2315, 2329, 2350, 2371
Hpy188I TCNGA 2 cut(s) 935, 2328
Hpy188III TCNNGA 2 cut(s) 986, 1001
Hpy99I CGWCG 3 cut(s) 935, 1094, 1402
HpyCH4III ACNGT 6 cut(s) 198, 390, 1061, 1079, 1115, 1398
HpyCH4V TGCA 3 cut(s) 68, 1176, 2255
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 954, 1035, 1052, 1139, 1313, 2405
HpyF3I CTNAG 1 cut(s) 1308
Hsp92II CATG 4 cut(s) 1029, 1054, 1156, 2231
HspAI GCGC 1 cut(s) 1008
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 5 cut(s) 115, 918, 1020, 1047, 2323
LmnI GCTCC 5 cut(s) 883, 1152, 1211, 1285, 1321
Lsp1109I GCAGC 4 cut(s) 80, 1188, 2267, 2321
LweI GCATC 1 cut(s) 944
MaeIII GTNAC 6 cut(s) 210, 258, 354, 447, 2294, 2356
MalI GATC 5 cut(s) 117, 920, 1022, 1049, 2325
MbiI CCGCTC 1 cut(s) 1316
MboI GATC 5 cut(s) 115, 918, 1020, 1047, 2323
MboII GAAGA 2 cut(s) 126, 1112
MfeI CAATTG 1 cut(s) 1240
MhlI GDGCHC 1 cut(s) 1257
MluCI AATT 3 cut(s) 425, 1082, 1240
MlyI GAGTC 2 cut(s) 2282, 2309
MmeI TCCRAC 2 cut(s) 913, 1208
MunI CAATTG 1 cut(s) 1240
Mva1269I GAATGC 1 cut(s) 1179
MvnI CGCG 1 cut(s) 1142
MwoI GCNNNNNNNGC 7 cut(s) 68, 954, 1035, 1052, 1139, 1313, 2405
NdeII GATC 5 cut(s) 115, 918, 1020, 1047, 2323
NlaIII CATG 4 cut(s) 1029, 1054, 1156, 2231
NlaIV GGNNCC 4 cut(s) 879, 1126, 1158, 1213
NmeAIII GCCGAG 1 cut(s) 1153
NmuCI GTSAC 5 cut(s) 210, 258, 354, 447, 2294
NspI RCATGY 1 cut(s) 1029
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 1 cut(s) 1179
PfeI GAWTC 3 cut(s) 2329, 2350, 2371
PflMI CCANNNNNTGG 1 cut(s) 2395
PinAI ACCGGT 2 cut(s) 2339, 2360
PkrI GCNGC 8 cut(s) 48, 70, 669, 1178, 1353, 1425, 2257, 2311
PleI GAGTC 2 cut(s) 2282, 2309
PpsI GAGTC 2 cut(s) 2282, 2309
PshAI GACNNNNGTC 1 cut(s) 1373
PspEI GGTNACC 2 cut(s) 2294, 2356
PspFI CCCAGC 1 cut(s) 1029
PspN4I GGNNCC 4 cut(s) 879, 1126, 1158, 1213
SatI GCNGC 8 cut(s) 47, 69, 668, 1177, 1352, 1424, 2256, 2310
Sau3AI GATC 5 cut(s) 115, 918, 1020, 1047, 2323
SchI GAGTC 2 cut(s) 2282, 2309
SduI GDGCHC 1 cut(s) 1257
SfaNI GCATC 1 cut(s) 944
SfcI CTRYAG 2 cut(s) 157, 949
SmlI CTYRAG 1 cut(s) 1256
SmoI CTYRAG 1 cut(s) 1256
Sse9I AATT 3 cut(s) 425, 1082, 1240
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 6 cut(s) 198, 390, 1061, 1079, 1115, 1398
TaqI TCGA 4 cut(s) 11, 89, 1002, 1098
TasI AATT 3 cut(s) 425, 1082, 1240
TauI GCSGC 4 cut(s) 49, 670, 1354, 1426
TfiI GAWTC 3 cut(s) 2329, 2350, 2371
TscAI CASTG 1 cut(s) 2306
TseFI GTSAC 5 cut(s) 210, 258, 354, 447, 2294
TseI GCWGC 4 cut(s) 68, 1176, 2255, 2309
Tsp45I GTSAC 5 cut(s) 210, 258, 354, 447, 2294
TspGWI ACGGA 2 cut(s) 423, 870
TspRI CASTG 1 cut(s) 2306
Van91I CCANNNNNTGG 1 cut(s) 2395
XapI RAATTY 1 cut(s) 1082
XceI RCATGY 1 cut(s) 1029
XmiI GTMKAC 8 cut(s) 156, 252, 300, 348, 489, 942, 1341, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.