RchiOBHm_Chr3g0482711

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
28750643 .. 28751188
546 bp
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UTR
Exon/CDS
Intron
PRQ44755

Sequence Viewer

Length: 546 bp
ATGTTGGAGGCCTTTCTAAGGAACTACGGGCCACTTCAAGTTAAAAGATTCAGTTATTCGGATGTCAAAAAAATGACCAACTCATTCAAGGAAAAGTTGGGGCAAGGGGGCTATGGTGATGTTTACAAAGGAGAGTTAAAAGATGGTCGTCTTGTAGTAGTGAAGATCTTGAACAGATCAAAAGGTGATGGAGAAGACTTTATGAACGAGGTCGCAGCCATTAGTAGAACTTCACATGTCAACATTGTCAGCTTGTTGGGATTTTGCTTCGAGTGTTCAAAAAGAGCTCTCATCTATGAATTCATGCCTAATGGATCTCTTGAGAAGTTCATATTTGATGCAAATAACCCCCAAAAAGATCATCATTTGGGATGGGAAGCATTATATGTAATTTCACTTGGTATTGCTCGTGGACTGGAGTATTTACATCGTGGATGCAACACAAAAATTTTGCATTTTGACATTAAGCCTCATAATATTCTTCTGGATGAGAACTTTGTTGGAGAGGAAAGATCTCACATTGGAAAAATGACAAATAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

181

Amino Acids

20.63

Weight (kDa)

8.68

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 29 - 166 1.6e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 29 - 165 1.4e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 2 cut(s) 299, 447
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 38, 88, 172, 279
AluBI AGCT 2 cut(s) 252, 287
AluI AGCT 2 cut(s) 252, 287
Alw21I GWGCWC 1 cut(s) 289
AlwI GGATC 1 cut(s) 322
AoxI GGCC 2 cut(s) 9, 29
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 299, 447
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 128, 197
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 137, 182, 366
BglII AGATCT 2 cut(s) 165, 512
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 2 cut(s) 328, 425
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 420
BseGI GGATG 4 cut(s) 67, 377, 440, 493
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 420
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 2 cut(s) 11, 31
BsiHKAI GWGCWC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 2 cut(s) 11, 31
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 5 cut(s) 165, 176, 314, 358, 512
BspANI GGCC 2 cut(s) 11, 31
BspPI GGATC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 420
BssMI GATC 5 cut(s) 165, 176, 314, 358, 512
BssSI CACGAG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 16
BstF5I GGATG 4 cut(s) 67, 377, 440, 493
BstKTI GATC 5 cut(s) 168, 179, 317, 361, 515
BstMBI GATC 5 cut(s) 165, 176, 314, 358, 512
BstNSI RCATGY 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 165, 314, 512
BstYI RGATCY 3 cut(s) 165, 314, 512
BsuRI GGCC 2 cut(s) 11, 31
BtsCI GGATG 4 cut(s) 67, 377, 440, 493
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 2 cut(s) 236, 304
CviJI RGCY 7 cut(s) 11, 31, 111, 218, 252, 287, 469
CviKI_1 RGCY 7 cut(s) 11, 31, 111, 218, 252, 287, 469
DdeI CTNAG 1 cut(s) 17
DpnI GATC 5 cut(s) 167, 178, 316, 360, 514
DpnII GATC 5 cut(s) 165, 176, 314, 358, 512
Ecl136II GAGCTC 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 16
EcoRI GAATTC 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 2 cut(s) 239, 307
FatI CATG 2 cut(s) 235, 303
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 4 cut(s) 74, 384, 447, 500
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 11, 31
Hin1II CATG 2 cut(s) 239, 307
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 48
HphI GGTGA 2 cut(s) 128, 197
Hpy166II GTNNAC 3 cut(s) 124, 241, 413
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 169, 320, 485
Hpy8I GTNNAC 3 cut(s) 124, 241, 413
HpyCH4V TGCA 3 cut(s) 341, 438, 454
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 2 cut(s) 239, 307
Kzo9I GATC 5 cut(s) 165, 176, 314, 358, 512
LpnPI CCDG 2 cut(s) 401, 470
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 328, 425
MalI GATC 5 cut(s) 167, 178, 316, 360, 514
MboI GATC 5 cut(s) 165, 176, 314, 358, 512
MboII GAAGA 3 cut(s) 175, 206, 473
MflI RGATCY 3 cut(s) 165, 314, 512
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 3 cut(s) 299, 390, 447
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 3 cut(s) 202, 480, 499
MseI TTAA 3 cut(s) 42, 137, 465
NdeII GATC 5 cut(s) 165, 176, 314, 358, 512
NlaIII CATG 2 cut(s) 239, 307
NspI RCATGY 1 cut(s) 239
PceI AGGCCT 1 cut(s) 11
PciI ACATGT 1 cut(s) 235
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 217
PscI ACATGT 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 3 cut(s) 165, 314, 512
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 42, 137, 465
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 5 cut(s) 165, 176, 314, 358, 512
Sau96I GGNCC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 289
SetI ASST 4 cut(s) 187, 213, 254, 289
SfaNI GCATC 2 cut(s) 328, 425
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 299, 390, 447
SseBI AGGCCT 1 cut(s) 11
SspI AATATT 1 cut(s) 478
SstI GAGCTC 1 cut(s) 289
StuI AGGCCT 1 cut(s) 11
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 299, 390, 447
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 3 cut(s) 42, 137, 465
Tru9I TTAA 3 cut(s) 42, 137, 465
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 4 cut(s) 218, 292, 312, 319
XagI CCTNNNNNAGG 1 cut(s) 16
XapI RAATTY 2 cut(s) 299, 447
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.