Rmu_sc0001200.1_g000017

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001200.1
OG0001240
Physical Location & Seq
Forward (+)
128195 .. 128545
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001200.1_g000017.1.cds

Sequence Viewer

Length: 351 bp
atgaccaactccttcaaaagaaaactaggacaagggggatacggcggtgtatacaaaggaaaactaaatgatggccgtcttgtagcagtgaaggtcttgaacagaccaaaaggtgatggagaagactttatgaatgaggttgcagccattagtacaacttcccatgtcaacattgtcagcctgatgggattttgttttgagggttcgaaaagagctcttatctatgaattcatgcctaatggatctcttgaaaagttcatatttgatgcaaagacccccccccccaaaaggatcatcacttgggatgggatatgttggaaacaatttcacttggtattgctcaaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

116

Amino Acids

12.99

Weight (kDa)

9.48

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AciI CCGC 1 cut(s) 45
AclWI GGATC 2 cut(s) 250, 299
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 16, 100, 251
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 250, 299
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 206
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 155
BccI CCATC 4 cut(s) 65, 110, 178, 299
BceAI ACGGC 2 cut(s) 58, 60
BciVI GTATCC 1 cut(s) 32
BfaI CTAG 2 cut(s) 26, 349
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 242, 291
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 250, 299
BspT104I TTCGAA 1 cut(s) 206
BssMI GATC 2 cut(s) 242, 291
BssNAI GTATAC 1 cut(s) 52
Bst1107I GTATAC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 206
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 245, 294
BstMBI GATC 2 cut(s) 242, 291
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 52
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 164, 232
CviJI RGCY 4 cut(s) 75, 146, 180, 215
CviKI_1 RGCY 4 cut(s) 75, 146, 180, 215
CviQI GTAC 1 cut(s) 153
DpnI GATC 2 cut(s) 244, 293
DpnII GATC 2 cut(s) 242, 291
EaeI YGGCCR 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 167, 235
FaiI YATR 7 cut(s) 52, 131, 165, 225, 233, 260, 313
FatI CATG 2 cut(s) 163, 231
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 26, 349
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 2 cut(s) 167, 235
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 52, 169
Hpy188III TCNNGA 2 cut(s) 97, 248
Hpy8I GTNNAC 2 cut(s) 52, 169
HpyAV CCTTC 2 cut(s) 22, 85
HpyCH4V TGCA 2 cut(s) 143, 269
Hsp92II CATG 2 cut(s) 167, 235
Kzo9I GATC 2 cut(s) 242, 291
LpnPI CCDG 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 26, 349
MalI GATC 2 cut(s) 244, 293
MboI GATC 2 cut(s) 242, 291
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 227, 323
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 2 cut(s) 130, 193
NdeII GATC 2 cut(s) 242, 291
NlaIII CATG 2 cut(s) 167, 235
NspV TTCGAA 1 cut(s) 206
PkrI GCNGC 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 242, 291
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 96, 115, 141, 217
SfaNI GCATC 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 227, 323
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 26, 349
SstI GAGCTC 1 cut(s) 217
TaqI TCGA 1 cut(s) 206
TasI AATT 2 cut(s) 227, 323
TatI WGTACW 1 cut(s) 152
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 146, 220, 240, 247
TspRI CASTG 1 cut(s) 93
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 2 cut(s) 26, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.