Rmu_sc0023175.1_g000002

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023175.1
OG0001240
Physical Location & Seq
Reverse (-)
9567 .. 10154
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023175.1_g000002.1.cds

Sequence Viewer

Length: 588 bp
atggaggcctttctgtcgaaatatgggccacttcaagttaaaagatacagctatttggatgttaagaagatgaccaattctttcgaagaaaaattaggacaagggggctacggtggtgtatacaaaggaaaactaaacgatggctgtctcgtagcagtgaagatcttgaacagatcaaaaggtaatggagaggattttatgaatgaagttgcagccattagtagaacttcccatgtcaacattgtcagcttgttgggcttttgttttgagggttcaaaaacagctctggtctatgaattaatgcctaatggatccctcgagaagttcatatttgatgcaaataacccccgaaaagatcatcacttgggatgggaagcactggaacaaatttcacttggcattgctcgaggactagagtacttgcatcgtggttgcaacacaagaattttgcattttgacatcaagcctcttagcctcataacattcttcttgatgagaacttcttgcctaagatctctgatttcggccttgccaaaatatgtgacaggaaagagagtatcgtgtctatgtcatatgcaagaggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

195

Amino Acids

21.9

Weight (kDa)

9.11

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AclWI GGATC 2 cut(s) 306, 319
AcsI RAATTY 2 cut(s) 387, 444
AfaI GTAC 1 cut(s) 419
AgsI TTSAA 3 cut(s) 35, 169, 276
AluBI AGCT 3 cut(s) 51, 249, 284
AluI AGCT 3 cut(s) 51, 249, 284
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 306, 319
Ama87I CYCGRG 2 cut(s) 317, 405
AoxI GGCC 3 cut(s) 6, 26, 525
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 387, 444
AseI ATTAAT 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 84
AvaI CYCGRG 2 cut(s) 317, 405
BamHI GGATCC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 134, 363
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 413
BglII AGATCT 2 cut(s) 162, 512
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 419
BmeT110I CYCGRG 2 cut(s) 317, 405
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 325, 433
Bpu14I TTCGAA 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 399
BseGI GGATG 2 cut(s) 64, 374
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 3 cut(s) 8, 28, 527
BsiHKCI CYCGRG 2 cut(s) 317, 405
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 3 cut(s) 8, 28, 527
BsoBI CYCGRG 2 cut(s) 317, 405
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 5 cut(s) 162, 173, 311, 355, 512
BspANI GGCC 3 cut(s) 8, 28, 527
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 2 cut(s) 306, 319
BspT104I TTCGAA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 1 cut(s) 384
BssMI GATC 5 cut(s) 162, 173, 311, 355, 512
BssNAI GTATAC 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 470, 509
BstF5I GGATG 2 cut(s) 64, 374
BstKTI GATC 5 cut(s) 165, 176, 314, 358, 515
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 5 cut(s) 162, 173, 311, 355, 512
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 3 cut(s) 162, 311, 512
BstYI RGATCY 3 cut(s) 162, 311, 512
BstZ17I GTATAC 1 cut(s) 121
BsuRI GGCC 3 cut(s) 8, 28, 527
BtsCI GGATG 2 cut(s) 64, 374
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 377
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 418
CviAII CATG 1 cut(s) 233
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 470, 509
DpnI GATC 5 cut(s) 164, 175, 313, 357, 514
DpnII GATC 5 cut(s) 162, 173, 311, 355, 512
Eco147I AGGCCT 1 cut(s) 8
Eco88I CYCGRG 2 cut(s) 317, 405
FaeI CATG 1 cut(s) 236
FatI CATG 1 cut(s) 232
FauNDI CATATG 1 cut(s) 573
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 2 cut(s) 71, 381
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 3 cut(s) 8, 28, 527
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 121, 238
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 3 cut(s) 166, 319, 490
Hpy8I GTNNAC 2 cut(s) 121, 238
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 6 cut(s) 212, 338, 424, 435, 451, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 470, 509
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 5 cut(s) 162, 173, 311, 355, 512
LpnPI CCDG 3 cut(s) 272, 365, 531
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 325, 433
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 541
MalI GATC 5 cut(s) 164, 175, 313, 357, 514
MboI GATC 5 cut(s) 162, 173, 311, 355, 512
MboII GAAGA 4 cut(s) 79, 98, 172, 478
MflI RGATCY 3 cut(s) 162, 311, 512
MluCI AATT 5 cut(s) 76, 92, 296, 387, 444
MnlI CCTC 7 cut(s) 184, 262, 326, 401, 477, 485, 574
MseI TTAA 3 cut(s) 39, 63, 299
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeI CATATG 1 cut(s) 573
NdeII GATC 5 cut(s) 162, 173, 311, 355, 512
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 541
NspV TTCGAA 1 cut(s) 84
PaeR7I CTCGAG 2 cut(s) 317, 405
PceI AGGCCT 1 cut(s) 8
PkrI GCNGC 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 26
PspXI VCTCGAGB 1 cut(s) 405
PsuI RGATCY 3 cut(s) 162, 311, 512
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 39, 63, 299
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 5 cut(s) 162, 173, 311, 355, 512
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 419
SetI ASST 5 cut(s) 53, 184, 251, 286, 585
SfaNI GCATC 2 cut(s) 325, 433
Sfr274I CTCGAG 2 cut(s) 317, 405
SfuI TTCGAA 1 cut(s) 84
SlaI CTCGAG 2 cut(s) 317, 405
SmlI CTYRAG 2 cut(s) 317, 405
SmoI CTYRAG 2 cut(s) 317, 405
Sse9I AATT 5 cut(s) 76, 92, 296, 387, 444
SseBI AGGCCT 1 cut(s) 8
SspMI CTAG 1 cut(s) 413
StuI AGGCCT 1 cut(s) 8
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 17, 84, 318, 406
TasI AATT 5 cut(s) 76, 92, 296, 387, 444
TatI WGTACW 1 cut(s) 417
Tru1I TTAA 3 cut(s) 39, 63, 299
Tru9I TTAA 3 cut(s) 39, 63, 299
TscAI CASTG 2 cut(s) 162, 384
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 215, 219, 309, 316
TspRI CASTG 2 cut(s) 162, 384
VspI ATTAAT 1 cut(s) 299
XapI RAATTY 2 cut(s) 387, 444
XhoI CTCGAG 2 cut(s) 317, 405
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.