Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Reverse (-)

85351955 .. 85354169

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTCTTTTTATGGCTGTTTTGTTTACACTTGGCTCTGATTTCGATTGAACCTCTCCGATCCCTTACTGCAGCTCCGATCTTGAGCGAAAAGGTTTTTGTTGATGAGTGCCTCGCCTTTTGGGATGACGATGGTGGGACAACATATGCTATTTCGGTATGGCCTCCCTGCGATTTGTCTCGACGGCAGATACTGGTGTTTGTTTGGCTCCAATTTTCCTTGAGCTTGTCAACAGTCTCTTTTCTGCGCAGGCGTGCTAGCACCGTTCAGATGCGGTCGTCGGGGATGTCCCTTGACCTAACTTCTTTCAAGCGATTGTGGACGAGGAGAGCACCAACCTCGTCGTGGGATTCGTTGTGCCTCGTGACGAGGACTTTTGCTGAGCTTCTTCAAAATCACAATCGATACTCGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

16.1

Weight (kDa)

8.88

Isoelectric Point (pI)

77.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	50, 310, 392
AluBI	AGCT	3 cut(s)	74, 225, 385
AluI	AGCT	3 cut(s)	74, 225, 385
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	183, 241
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	249
AsuNHI	GCTAGC	1 cut(s)	257
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BauI	CACGAG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BcoDI	GTCTC	2 cut(s)	183, 241
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	72
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	261
BmtI	GCTAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	103, 241
Bsa29I	ATCGAT	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	403
BseGI	GGATG	2 cut(s)	130, 291
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	163
BshVI	ATCGAT	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	151, 274
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	183, 241
BsmFI	GGGAC	2 cut(s)	151, 274
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	59, 78
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	59, 78
BssSI	CACGAG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	235, 265
BstC8I	GCNNGC	3 cut(s)	251, 255, 259
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	130, 291
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	62, 81
BstMAI	GTCTC	2 cut(s)	183, 241
BstMBI	GATC	2 cut(s)	59, 78
BstMCI	CGRYCG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	130, 291
Cac8I	GCNNGC	3 cut(s)	251, 255, 259
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	403
CviJI	RGCY	7 cut(s)	16, 35, 74, 163, 208, 225, 385
CviKI_1	RGCY	7 cut(s)	16, 35, 74, 163, 208, 225, 385
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	61, 80
DpnII	GATC	2 cut(s)	59, 78
FaiI	YATR	4 cut(s)	13, 145, 147, 160
FaqI	GGGAC	2 cut(s)	151, 274
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	137, 298
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	258
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	249
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	26, 231, 321
Hpy188I	TCNGA	4 cut(s)	39, 59, 78, 270
Hpy188III	TCNNGA	3 cut(s)	82, 180, 364
Hpy8I	GTNNAC	3 cut(s)	26, 231, 321
Hpy99I	CGWCG	3 cut(s)	186, 283, 346
HpyCH4III	ACNGT	2 cut(s)	235, 265
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	381
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	59, 78
LmnI	GCTCC	2 cut(s)	79, 213
LpnPI	CCDG	3 cut(s)	179, 181, 235
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	61, 80
MboI	GATC	2 cut(s)	59, 78
MboII	GAAGA	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	212
MnlI	CCTC	7 cut(s)	63, 122, 174, 318, 349, 363, 371
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	2 cut(s)	59, 78
NheI	GCTAGC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	193
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	59, 78
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	55, 76, 96, 227, 300, 341, 387
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	82, 220
SmoI	CTYRAG	2 cut(s)	82, 220
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	235, 265
TaqI	TCGA	4 cut(s)	44, 181, 403, 410
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.