Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001240

Physical Location & Seq

Genomic Coordinates Forward (+)

13839158 .. 13840147

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATAGAGGCAAGGCACGAGGGTTGCAGAAATGAACTGAATGAAGAAATGAAGTTTTCCCGATCCAGCAAGGAAATCTTGGTCCGACTAGGAAACCTAGTCAAAGCAGGAATCTTGGGTCAACTAGGAAACATGATTAGAAATGAAGAAAAATGCTGGTCAACGGTCTCTTTCTCGCGCGGGCATGCTAGCACCGTTCGGCTGCGGTCATCGGGGGTGCCTCTTGACCTGACTTCTTTTAAGCGATTGTGGACGAGGAGAGCACCAAACTCATCGTGGGATTCTTTGTGCCTCGTGGTGAGGACATTTGCTAAGCTTCTTCAAAATCACGCAATCGATACTCGACGTAGTAGATCGAGCAGAGTGAAAATCACCGGGAAGTGGGGAGAACTTGCTAAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.23

Weight (kDa)

10.87

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36005
fragaria_vesca	FvH4_4g11660
malus_domestica	MD12G1251600.v1.1 MD16G1039400.v1.1
prunus_persica	Prupe.1G182200_v2.0.a1
pyrus_communis	pycom13g03280
rosa_chinensis	RchiOBHm_Chr3g0482711 RchiOBHm_Chr4g0408821 RchiOBHm_Chr5g0023091 RchiOBHm_Chr5g0051751 RchiOBHm_Chr5g0079621 RchiOBHm_Chr7g0185981 RchiOBHm_Chr7g0190761
rosa_laevigata	RLG00000004877 RLG00000008627 RLG00000008628 RLG00000008629 RLG00000008717 RLG00000023311
rosa_multiflora	Rmu_co8377595.1_g000001 Rmu_sc0001200.1_g000016 Rmu_sc0001200.1_g000017 Rmu_sc0005107.1_g000004 Rmu_sc0005665.1_g000005 Rmu_sc0005665.1_g000033 Rmu_sc0007477.1_g000007 Rmu_sc0023175.1_g000002
rosa_roxburghii	Rroxscaffold_2G00092290 Rroxscaffold_5G00353200 Rroxscaffold_6G00415780 Rroxscaffold_7G00172470
rosa_rugosa	Rorug01G0315100 Rorug01G0387900 Rorug02G0472900 Rorug03G0071600 Rorug03G0076900 Rorug03G0344200 Rorug04G0062300 Rorug04G0088100 Rorug05G0262700
rosa_samantha	Rh2CG265300 Rh2DG267200 Rh2DG554600 Rh3DG143300 Rh4AG081700 Rh4AG152000 Rh4BG149400 Rh4CG160400 Rh4DG145200 Rh5AG391800 Rh5CG428100 Rh6BG257400 Rh6CG480100 Rh7AG054700 Rh7CG112900
rosa_wichuraiana	Rw4G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AccII	CGCG	2 cut(s)	178, 180
AciI	CCGC	2 cut(s)	180, 205
AclWI	GGATC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	310, 364
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	2 cut(s)	17, 293
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	4 cut(s)	89, 98, 125, 189
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	178, 180
BshNI	GGYRCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	62, 353
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	180, 205
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	2 cut(s)	178, 180
BspLI	GGNNCC	1 cut(s)	219
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	172
BssMI	GATC	2 cut(s)	62, 353
BssSI	CACGAG	2 cut(s)	17, 293
Bst2BI	CACGAG	2 cut(s)	17, 293
Bst4CI	ACNGT	2 cut(s)	166, 196
BstC8I	GCNNGC	3 cut(s)	182, 186, 190
BstDEI	CTNAG	1 cut(s)	312
BstFNI	CGCG	2 cut(s)	178, 180
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	65, 356
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	62, 353
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	374
BstUI	CGCG	2 cut(s)	178, 180
BstV1I	GCAGC	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	182, 186, 190
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	336
CviAII	CATG	2 cut(s)	133, 185
CviJI	RGCY	2 cut(s)	202, 316
CviKI_1	RGCY	2 cut(s)	202, 316
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	64, 355
DpnII	GATC	2 cut(s)	62, 353
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	82
FaeI	CATG	2 cut(s)	136, 188
FaiI	YATR	2 cut(s)	134, 186
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	2 cut(s)	132, 184
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	4 cut(s)	89, 98, 125, 189
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	203
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	136, 188
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	122, 162
HindII	GTYRAC	2 cut(s)	122, 162
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	111, 281
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	310, 364
Hpy166II	GTNNAC	3 cut(s)	122, 162, 252
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	60, 224
Hpy8I	GTNNAC	3 cut(s)	122, 162, 252
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	166, 196
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	136, 188
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	62, 353
LpnPI	CCDG	5 cut(s)	79, 93, 142, 242, 388
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	4 cut(s)	89, 98, 125, 189
MaeII	ACGT	1 cut(s)	346
MalI	GATC	2 cut(s)	64, 355
MboI	GATC	2 cut(s)	62, 353
MboII	GAAGA	3 cut(s)	56, 158, 311
MhlI	GDGCHC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	13, 231, 249, 294, 302
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	376
MvnI	CGCG	2 cut(s)	178, 180
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	2 cut(s)	62, 353
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	136, 188
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	111, 281
PkrI	GCNGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	62, 353
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	4 cut(s)	99, 231, 318, 349
SinI	GGWCC	1 cut(s)	82
SphI	GCATGC	1 cut(s)	188
SsiI	CCGC	2 cut(s)	180, 205
SspMI	CTAG	4 cut(s)	89, 98, 125, 189
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	166, 196
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	336, 343, 356
TfiI	GAWTC	2 cut(s)	111, 281
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	48, 57, 65, 159
VpaK11BI	GGWCC	1 cut(s)	82
XceI	RCATGY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	4 cut(s)	89, 98, 125, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.