RchiOBHm_Chr5g0023091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001240
Physical Location & Seq
Forward (+)
17082106 .. 17082984
879 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30298

Sequence Viewer

Length: 318 bp
ATGTGTTTTCTTGTTTTTGCTGAATCACCATTATTGAATGGTGATGATGTACCAGTACAAAAGATTAGCAAACCTGTCTCTCGTAAAATTAAGGTATGTGTTTGGCTCCAGTTTTGTTGCAGCTGGTCAACAGTCTCTTTTCTGCGCGGGCGTGCCAGCACCGTTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCTGACTTCTTTCAAGCGATTGTGGACGAGGAGAGCACCAACCTCGTCATGGGATTCTTTGTGCCTCGTGGCGAGGACTTTTGCTGAGCTTCTTGAAAATCACAATCGATACTCGATGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

9.86

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 147, 172
AfaI GTAC 2 cut(s) 51, 57
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 37, 208, 290
AluBI AGCT 2 cut(s) 123, 283
AluI AGCT 2 cut(s) 123, 283
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 82, 139
ApeKI GCWGC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 18, 53
BauI CACGAG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BcoDI GTCTC 2 cut(s) 82, 139
BisI GCNGC 1 cut(s) 121
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 53, 109
BseCI ATCGAT 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 53, 109
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 176
BshVI ATCGAT 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 82, 139
BsmFI GGGAC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 232
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 2 cut(s) 147, 172
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 301
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 107
BsrI ACTGG 2 cut(s) 53, 109
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 133, 163
BstC8I GCNNGC 3 cut(s) 149, 153, 157
BstDEI CTNAG 1 cut(s) 279
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 82, 139
BstMCI CGRYCG 1 cut(s) 176
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 149, 153, 157
CfoI GCGC 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 301
Csp6I GTAC 2 cut(s) 50, 56
CviAII CATG 1 cut(s) 243
CviJI RGCY 3 cut(s) 106, 123, 283
CviKI_1 RGCY 3 cut(s) 106, 123, 283
CviQI GTAC 2 cut(s) 50, 56
DdeI CTNAG 1 cut(s) 279
FaeI CATG 1 cut(s) 246
FaiI YATR 2 cut(s) 97, 244
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 242
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 92
HhaI GCGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 23, 248
HphI GGTGA 2 cut(s) 18, 53
Hpy166II GTNNAC 2 cut(s) 129, 219
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 129, 219
Hpy99I CGWCG 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 133, 163
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 66, 87, 109, 122, 169, 209
Lsp1109I GCAGC 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 1 cut(s) 87
MnlI CCTC 4 cut(s) 216, 247, 261, 269
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 123
MvnI CGCG 1 cut(s) 147
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 23, 248
PkrI GCNGC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 123
RsaI GTAC 2 cut(s) 51, 57
RsaNI GTAC 2 cut(s) 50, 56
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 232
SetI ASST 6 cut(s) 76, 96, 125, 198, 239, 285
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 147, 172
TaaI ACNGT 2 cut(s) 133, 163
TaqI TCGA 2 cut(s) 301, 308
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 2 cut(s) 23, 248
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.